mRNA_L-elsbetiae_contig9973.18897.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9973.18897.1
Unique NamemRNA_L-elsbetiae_contig9973.18897.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9973.18897.1 vs. uniprot
Match: A0A6H5KHW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHW8_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 9.000e-65
Identity = 117/173 (67.63%), Postives = 130/173 (75.14%), Query Frame = 1 
Query:  298 AATGQKAGSEPAGK-QAEQHLSCKYTKEEVLARHWNMNLQQMKRVKALLRMGVCEEDLEIADRLLKMGRDDPKDTPLTKEEQLLGYTSHQRQRMKALQIXXXXXXSFERCRAVMLSSLGPSAFGYNVDETAKSAARAEAEEGWTPGDKFNRKGPGQHFGGDGHHSNLLRMPTF 813
            A  G+    +P+ K Q E+HLS KYTKEE++ARHW MNL QMKRVKALLRMGVCEEDLEIADRLLKMG +   DTP TKEEQLLGYTS QRQR+KAL I      SF+RCRAVMLSSLGPSAFGY+ DETA SA  AEAEEGWTPGDKF R+            + +LRMPTF
Sbjct:  192 ATDGEAVDPDPSSKDQPEEHLSTKYTKEELMARHWGMNLMQMKRVKALLRMGVCEEDLEIADRLLKMGLNWSNDTPPTKEEQLLGYTSQQRQRVKALHILGLTEESFDRCRAVMLSSLGPSAFGYSADETAASAVSAEAEEGWTPGDKFRRRXXXXXXXXXXXXTGILRMPTF 364
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BLAST of mRNA_L-elsbetiae_contig9973.18897.1 vs. uniprot
Match: D8LT43_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT43_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 4.180e-59
Identity = 102/143 (71.33%), Postives = 109/143 (76.22%), Query Frame = 1 
Query:  385 LARHWNMNLQQMKRVKALLRMGVCEEDLEIADRLLKMGRDDPKDTPLTKEEQLLGYTSHQRQRMKALQIXXXXXXSFERCRAVMLSSLGPSAFGYNVDETAKSAARAEAEEGWTPGDKFNRKGPGQHFGGDGHHSNLLRMPTF 813
            +ARHW MNL QMKRVKALLRMGVCEEDLEIADRLLKMG +   DTP TKEEQLLGY S QRQRMKAL I      SF+RCRAVMLSSLGPSAFGY+ DETA SA  AEAEEGWTPGDKF R+            + +LRMPTF
Sbjct:    1 MARHWGMNLMQMKRVKALLRMGVCEEDLEIADRLLKMGLNWSNDTPPTKEEQLLGYNSQQRQRMKALHILGLTEESFDRCRAVMLSSLGPSAFGYSADETAASAVSAEAEEGWTPGDKFRRRXXXXXXXXXXXXTGILRMPTF 143
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BLAST of mRNA_L-elsbetiae_contig9973.18897.1 vs. uniprot
Match: D7FYM0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYM0_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 2.490e-8
Identity = 45/122 (36.89%), Postives = 65/122 (53.28%), Query Frame = 1 
Query:  352 HLSCKYTKEEVLARHWNMNLQQMKRVKALLRMGVCEEDLEIADRLLKMGRDDPKDTPLTKEEQLLGYTSHQRQRMKALQIXXXXXXSFERCRAVMLSSLGPSAFGYNVDETAKSAARAEAEE 717
            H+S  Y K++V+ +H+ +  +Q  R +ALLR+GV +ED+ IA+RL+    +   +TP +KEE LLG T  Q    KALQ+        E  R+  L  LG    G    E     A  EAE+
Sbjct:   68 HISTLYEKQDVMVKHFGVTQKQALRTQALLRLGVTDEDVRIAERLMGSRSEGADNTP-SKEEWLLGVTYAQMSFHKALQVLGISEAVVEEERSRRLGELGSGGRGGGASECG---AGQEAED 185
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9973.18897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KHW8_9PHAE9.000e-6567.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LT43_ECTSI4.180e-5971.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FYM0_ECTSI2.490e-836.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9973contigL-elsbetiae_contig9973:5828..6981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-08_004080.1
Exons2
Model size828
Cds size828
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817055.448074-CDS-L-elsbetiae_contig9973:5827..63271622817055.448074-CDS-L-elsbetiae_contig9973:5827..6327Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9973 5828..6327 +
1691684013.4467206-CDS-L-elsbetiae_contig9973:5827..63271691684013.4467206-CDS-L-elsbetiae_contig9973:5827..6327Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9973 5828..6327 +
1622817055.460776-CDS-L-elsbetiae_contig9973:6653..69811622817055.460776-CDS-L-elsbetiae_contig9973:6653..6981Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9973 6654..6981 +
1691684013.46415-CDS-L-elsbetiae_contig9973:6653..69811691684013.46415-CDS-L-elsbetiae_contig9973:6653..6981Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9973 6654..6981 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9973.18897.1prot_L-elsbetiae_contig9973.18897.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9973 5828..6981 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9973.18897.1

>prot_L-elsbetiae_contig9973.18897.1 ID=prot_L-elsbetiae_contig9973.18897.1|Name=mRNA_L-elsbetiae_contig9973.18897.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=276bp
KLAEGDGGNGGNGAHETRETAAGATHIPHGGPGGEVEGGGESSGVGGGGG
EGGDDGGSGGTGDAAAAAAAAAAVAAATAAVALAAAALVASPAAVETPNA
ATGQKAGSEPAGKQAEQHLSCKYTKEEVLARHWNMNLQQMKRVKALLRMG
VCEEDLEIADRLLKMGRDDPKDTPLTKEEQLLGYTSHQRQRMKALQILGL
TEESFERCRAVMLSSLGPSAFGYNVDETAKSAARAEAEEGWTPGDKFNRK
GPGQHFGGDGHHSNLLRMPTFGGSNN
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mRNA from alignment at L-elsbetiae_contig9973:5828..6981+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9973.18897.1 ID=mRNA_L-elsbetiae_contig9973.18897.1|Name=mRNA_L-elsbetiae_contig9973.18897.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1154bp|location=Sequence derived from alignment at L-elsbetiae_contig9973:5828..6981+ (Laminarionema elsbetiae ELsaHSoW15)
AAACTGGCCGAGGGTGACGGGGGCAACGGGGGCAACGGGGCCCACGAAAC
CAGAGAAACAGCCGCGGGTGCAACACACATTCCACACGGCGGTCCTGGGG
GTGAGGTGGAGGGTGGCGGTGAGAGCAGCGGTGTTGGCGGGGGAGGCGGC
GAAGGTGGCGACGACGGTGGCAGTGGAGGTACCGGGGATGCTGCTGCTGC
CGCCGCCGCCGCCGCCGCTGTCGCTGCCGCTACCGCTGCCGTGGCTCTTG
CTGCGGCTGCTCTTGTCGCCAGTCCTGCAGCGGTAGAAACCCCGAACGCA
GCAACCGGCCAAAAAGCCGGTTCGGAGCCTGCGGGGAAGCAGGCCGAGCA
GCACCTGTCGTGTAAGTACACCAAAGAAGAAGTGCTGGCGAGGCACTGGA
ATATGAACCTGCAGCAGATGAAACGGGTCAAGGCCCTCCTGAGAATGGGG
GTCTGCGAGGAGGATCTCGAGATTGCGGACAGGCTCCTCAAGATGGGCAG
GTATGTCTATGGGGGGTGGGTGCTGCGGGGGGGATCGCGCGAGAGATAGG
ATTGATTGCTCGGTGGATTGTGACGTACCCGGCTGCAGGCTTGAACCCAT
TTTGCAGGTCGATGACCGAACAACAGCATTCCCTCAAAGTGTATGCACGG
CAACATTAGATTGTAGGTGAACCAACCGAATGGGTTTTGTTTCGTGCTTT
CCCCCTTCATAGACCCCATCCTACCCTATTCCTGCGCCCGAGCTGCTCCA
AAAGAAGAGGAACGTTTGTTCCCTCACCAGCAACCAATCACCCTTTCAAC
TACCTATGTTATTCTCATGCCAGCAGGGATGATCCCAAAGACACCCCACT
GACGAAAGAAGAGCAACTGCTGGGCTACACCTCGCACCAGCGGCAGCGAA
TGAAAGCGCTGCAGATCTTGGGCCTCACAGAGGAGTCGTTCGAGCGCTGT
CGAGCAGTCATGCTGAGCTCCCTGGGGCCATCGGCGTTCGGCTACAACGT
GGACGAGACGGCGAAATCGGCGGCGAGGGCGGAAGCGGAGGAAGGGTGGA
CACCGGGGGACAAATTCAACAGAAAAGGACCTGGGCAACACTTCGGGGGC
GACGGCCATCATTCTAATCTCTTGAGAATGCCAACTTTCGGCGGAAGTAA
CAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9973:5828..6981+

>mRNA_L-elsbetiae_contig9973.18897.1 ID=mRNA_L-elsbetiae_contig9973.18897.1|Name=mRNA_L-elsbetiae_contig9973.18897.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1656bp|location=Sequence derived from alignment at L-elsbetiae_contig9973:5828..6981+ (Laminarionema elsbetiae ELsaHSoW15)
AAACTGGCCGAGGGTGACGGGGGCAACGGGGGCAACGGGGCCCACGAAAC
CAGAGAAACAGCCGCGGGTGCAACACACATTCCACACGGCGGTCCTGGGG
GTGAGGTGGAGGGTGGCGGTGAGAGCAGCGGTGTTGGCGGGGGAGGCGGC
GAAGGTGGCGACGACGGTGGCAGTGGAGGTACCGGGGATGCTGCTGCTGC
CGCCGCCGCCGCCGCCGCTGTCGCTGCCGCTACCGCTGCCGTGGCTCTTG
CTGCGGCTGCTCTTGTCGCCAGTCCTGCAGCGGTAGAAACCCCGAACGCA
GCAACCGGCCAAAAAGCCGGTTCGGAGCCTGCGGGGAAGCAGGCCGAGCA
GCACCTGTCGTGTAAGTACACCAAAGAAGAAGTGCTGGCGAGGCACTGGA
ATATGAACCTGCAGCAGATGAAACGGGTCAAGGCCCTCCTGAGAATGGGG
GTCTGCGAGGAGGATCTCGAGATTGCGGACAGGCTCCTCAAGATGGGCAG
AAACTGGCCGAGGGTGACGGGGGCAACGGGGGCAACGGGGCCCACGAAAC
CAGAGAAACAGCCGCGGGTGCAACACACATTCCACACGGCGGTCCTGGGG
GTGAGGTGGAGGGTGGCGGTGAGAGCAGCGGTGTTGGCGGGGGAGGCGGC
GAAGGTGGCGACGACGGTGGCAGTGGAGGTACCGGGGATGCTGCTGCTGC
CGCCGCCGCCGCCGCCGCTGTCGCTGCCGCTACCGCTGCCGTGGCTCTTG
CTGCGGCTGCTCTTGTCGCCAGTCCTGCAGCGGTAGAAACCCCGAACGCA
GCAACCGGCCAAAAAGCCGGTTCGGAGCCTGCGGGGAAGCAGGCCGAGCA
GCACCTGTCGTGTAAGTACACCAAAGAAGAAGTGCTGGCGAGGCACTGGA
ATATGAACCTGCAGCAGATGAAACGGGTCAAGGCCCTCCTGAGAATGGGG
GTCTGCGAGGAGGATCTCGAGATTGCGGACAGGCTCCTCAAGATGGGCAG
GGATGATCCCAAAGACACCCCACTGACGAAAGAAGAGCAACTGCTGGGCT
ACACCTCGCACCAGCGGCAGCGAATGAAAGCGCTGCAGATCTTGGGCCTC
ACAGAGGAGTCGTTCGAGCGCTGTCGAGCAGTCATGCTGAGCTCCCTGGG
GCCATCGGCGTTCGGCTACAACGTGGACGAGACGGCGAAATCGGCGGCGA
GGGCGGAAGCGGAGGAAGGGTGGACACCGGGGGACAAATTCAACAGAAAA
GGACCTGGGCAACACTTCGGGGGCGACGGCCATCATTCTAATCTCTTGAG
AATGCCAACTTTCGGCGGAAGTAACAACGGATGATCCCAAAGACACCCCA
CTGACGAAAGAAGAGCAACTGCTGGGCTACACCTCGCACCAGCGGCAGCG
AATGAAAGCGCTGCAGATCTTGGGCCTCACAGAGGAGTCGTTCGAGCGCT
GTCGAGCAGTCATGCTGAGCTCCCTGGGGCCATCGGCGTTCGGCTACAAC
GTGGACGAGACGGCGAAATCGGCGGCGAGGGCGGAAGCGGAGGAAGGGTG
GACACCGGGGGACAAATTCAACAGAAAAGGACCTGGGCAACACTTCGGGG
GCGACGGCCATCATTCTAATCTCTTGAGAATGCCAACTTTCGGCGGAAGT
AACAAC
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