mRNA_L-elsbetiae_contig9971.18896.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9971.18896.1
Unique NamemRNA_L-elsbetiae_contig9971.18896.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9971.18896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9971contigL-elsbetiae_contig9971:2180..2575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size251
Cds size249
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817055.4003549-CDS-L-elsbetiae_contig9971:2179..23571622817055.4003549-CDS-L-elsbetiae_contig9971:2179..2357Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9971 2180..2357 +
1691684013.424492-CDS-L-elsbetiae_contig9971:2179..23571691684013.424492-CDS-L-elsbetiae_contig9971:2179..2357Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9971 2180..2357 +
1622817055.4172144-CDS-L-elsbetiae_contig9971:2504..25751622817055.4172144-CDS-L-elsbetiae_contig9971:2504..2575Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9971 2505..2575 +
1691684013.4350355-CDS-L-elsbetiae_contig9971:2504..25751691684013.4350355-CDS-L-elsbetiae_contig9971:2504..2575Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9971 2505..2575 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9971.18896.1prot_L-elsbetiae_contig9971.18896.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9971 2180..2575 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9971.18896.1

>prot_L-elsbetiae_contig9971.18896.1 ID=prot_L-elsbetiae_contig9971.18896.1|Name=mRNA_L-elsbetiae_contig9971.18896.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=83bp
VLAPQQLNFTNPATQEEGVSGSSPGILGPGESKRPGESKREQSQTAQERP
ASPEVIEAGGQADGFTPAGLGQYPRRGRRRRR*
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mRNA from alignment at L-elsbetiae_contig9971:2180..2575+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9971.18896.1 ID=mRNA_L-elsbetiae_contig9971.18896.1|Name=mRNA_L-elsbetiae_contig9971.18896.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=396bp|location=Sequence derived from alignment at L-elsbetiae_contig9971:2180..2575+ (Laminarionema elsbetiae ELsaHSoW15)
GTGCTGGCCCCTCAACAACTGAATTTCACAAACCCGGCAACGCAGGAAGA
AGGAGTTTCGGGAAGCTCACCTGGAATACTGGGACCAGGTGAAAGCAAGC
GACCAGGTGAAAGCAAGCGCGAACAATCGCAAACAGCGCAAGAGCGCCCA
GCAAGCCCAGAGGTCATCGAAGCCGGAGGTGGGACACTGTATGAATGTAT
TGCTCGCGACGTATCGATGTACGAAGTGCTCTACAATAATGTGCTACTTC
ACGTTCTCGGCAACCACAAGGCGTTTCGTCGAAGTCTCATCCCTGTTCTG
CTCCTCCTCCTTCCTTCCCTGTCAGGGCAAGCCGATGGCTTCACACCGGC
TGGGCTCGGCCAATACCCACGACGAGGGAGGAGGAGGAGGAGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9971:2180..2575+

>mRNA_L-elsbetiae_contig9971.18896.1 ID=mRNA_L-elsbetiae_contig9971.18896.1|Name=mRNA_L-elsbetiae_contig9971.18896.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=498bp|location=Sequence derived from alignment at L-elsbetiae_contig9971:2180..2575+ (Laminarionema elsbetiae ELsaHSoW15)
GTGCTGGCCCCTCAACAACTGAATTTCACAAACCCGGCAACGCAGGAAGA
AGGAGTTTCGGGAAGCTCACCTGGAATACTGGGACCAGGTGAAAGCAAGC
GACCAGGTGAAAGCAAGCGCGAACAATCGCAAACAGCGCAAGAGCGCCCA
GCAAGCCCAGAGGTCATCGAAGCCGGAGGTGCTGGCCCCTCAACAACTGA
ATTTCACAAACCCGGCAACGCAGGAAGAAGGAGTTTCGGGAAGCTCACCT
GGAATACTGGGACCAGGTGAAAGCAAGCGACCAGGTGAAAGCAAGCGCGA
ACAATCGCAAACAGCGCAAGAGCGCCCAGCAAGCCCAGAGGTCATCGAAG
CCGGAGGGCAAGCCGATGGCTTCACACCGGCTGGGCTCGGCCAATACCCA
CGACGAGGGAGGAGGAGGAGGAGGTGAGGCAAGCCGATGGCTTCACACCG
GCTGGGCTCGGCCAATACCCACGACGAGGGAGGAGGAGGAGGAGGTGA
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