mRNA_L-elsbetiae_contig9967.18893.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9967.18893.1
Unique NamemRNA_L-elsbetiae_contig9967.18893.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9967.18893.1 vs. uniprot
Match: D7G107_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G107_ECTSI)

HSP 1 Score: 283 bits (725), Expect = 1.270e-88
Identity = 137/169 (81.07%), Postives = 150/169 (88.76%), Query Frame = 1 
Query:    1 IMALSPSCCGPTAPGPNDLVIHHRNYKAELTAEQYKKLVFEASDLKYEFYETVLRDAADSAAGRPETVWVVGEFSDDEPLFQQLQQEHGNVKKAGSVEDQFHAFCFLMRAPRLVMAHSTFSWWAAFLGGAAEVHFPLTRQFEGVTGPSIAVDEARYVYRDELGRVVPSP 507
            IMAL PSCCGPTAPGP DLVIHHRNY+AELTAEQY+KL+F+  DL YEFYE VLRDAA+SAAG PETVWVVGEF+D+EPLF++LQQ+H NVK+A  VEDQFHAFCFL RAPRLVMAHSTFSWW AFLG   EVHFPLT+Q +GVTGPSIAVDE RYVYRDE GRVVP P
Sbjct:   46 IMALDPSCCGPTAPGPGDLVIHHRNYRAELTAEQYEKLIFK--DLDYEFYEAVLRDAAESAAGPPETVWVVGEFNDEEPLFKRLQQDHPNVKRAEMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGVGTEVHFPLTKQNKGVTGPSIAVDEGRYVYRDEAGRVVPPP 212
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BLAST of mRNA_L-elsbetiae_contig9967.18893.1 vs. uniprot
Match: D7G104_ECTSI (Alpha-1,2-fucosyltransferase, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G104_ECTSI)

HSP 1 Score: 285 bits (729), Expect = 7.550e-87
Identity = 138/169 (81.66%), Postives = 150/169 (88.76%), Query Frame = 1 
Query:    1 IMALSPSCCGPTAPGPNDLVIHHRNYKAELTAEQYKKLVFEASDLKYEFYETVLRDAADSAAGRPETVWVVGEFSDDEPLFQQLQQEHGNVKKAGSVEDQFHAFCFLMRAPRLVMAHSTFSWWAAFLGGAAEVHFPLTRQFEGVTGPSIAVDEARYVYRDELGRVVPSP 507
            IMAL PSCCGPTAPGP DLVIHHRNY+AELTAEQY+KL+F+  DL YEFYE VLRDAA+SAAG PETVWVVGEF+D+EPLF++LQQ+H NVK+A  VEDQFHAFCFL RAPRLVMAHSTFSWW AFLG   EVHFPLTRQ +GVTGPSIAVDE RYVYRDE GRVVP P
Sbjct:  213 IMALDPSCCGPTAPGPGDLVIHHRNYRAELTAEQYEKLIFK--DLDYEFYEAVLRDAAESAAGPPETVWVVGEFNDEEPLFKRLQQDHPNVKRAEMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGVGTEVHFPLTRQNQGVTGPSIAVDEGRYVYRDEAGRVVPPP 379
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BLAST of mRNA_L-elsbetiae_contig9967.18893.1 vs. uniprot
Match: F2TVY1_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TVY1_SALR5)

HSP 1 Score: 86.7 bits (213), Expect = 3.740e-14
Identity = 58/156 (37.18%), Postives = 86/156 (55.13%), Query Frame = 1 
Query:   40 PGPNDLVIHHRNYKAELTAEQYKKLVFEAS-DLKYEFYETVLRDAADSAAGRPETVWVVGEFSDDEPLFQQLQQEHGN--VKKAGSVE-DQFHAFCFLMRAPRLVMAHSTFSWWAAFLGGAAEVHFPLTRQFEGVTGPS---IAVDEARYVYRDEL 486
            PGP D+V+H R Y      E+++    EA  DL +++Y+ +L+       G  +TVW+     +  P+ QQL  ++G   ++  GS      H + F+  A RLVM+ ST++WWAA+LG A EVH+PL   + G  GP      VDE RYV+ D L
Sbjct:  359 PGPRDIVVHLRAYHG-CEGEEHEYDPTEAFVDLPWDYYDRILQRY--QRKGGWDTVWLASRCGEHHPIAQQLMTKYGARVIQGDGSKNWASMHDWLFMRSARRLVMSQSTYAWWAAWLGDAEEVHYPLAGDWWG-KGPRHTLYPVDEPRYVFHDLL 510
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BLAST of mRNA_L-elsbetiae_contig9967.18893.1 vs. uniprot
Match: A0A8J2T2Q7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T2Q7_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.790e-5
Identity = 29/61 (47.54%), Postives = 36/61 (59.02%), Query Frame = 1 
Query:  310 FCFLMRAPRLVMAHSTFSWWAAFLGGAAEVHFPLTRQFEGVTGPSIAVDEARYVYRDELGR 492
            F +L RA RLV+  ST+SWWAA++G A EVH P      GV    +  DE RYV+ D   R
Sbjct:  164 FAYLARATRLVVTESTYSWWAAYVGQATEVHAP------GVGTVPVPADERRYVFHDIASR 218
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9967.18893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G107_ECTSI1.270e-8881.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G104_ECTSI7.550e-8781.66Alpha-1,2-fucosyltransferase, putative n=2 Tax=Ect... [more]
F2TVY1_SALR53.740e-1437.18Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A8J2T2Q7_9STRA1.790e-547.54Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9967contigL-elsbetiae_contig9967:2178..5138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score288.5
Seed ortholog evalue2e-75
Seed eggNOG ortholog2880.D7G104
Hectar predicted targeting categoryother localisation
EggNOG OGs2D12B@1,2SGFI@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1919
Cds size510
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9967.18893.1prot_L-elsbetiae_contig9967.18893.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9967 2181..3732 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817054.940825-UTR-L-elsbetiae_contig9967:2177..21801622817054.940825-UTR-L-elsbetiae_contig9967:2177..2180Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9967 2178..2180 +
1691684013.0015888-UTR-L-elsbetiae_contig9967:2177..21801691684013.0015888-UTR-L-elsbetiae_contig9967:2177..2180Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9967 2178..2180 +
1622817054.9894617-UTR-L-elsbetiae_contig9967:3732..51381622817054.9894617-UTR-L-elsbetiae_contig9967:3732..5138Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9967 3733..5138 +
1691684013.0691395-UTR-L-elsbetiae_contig9967:3732..51381691684013.0691395-UTR-L-elsbetiae_contig9967:3732..5138Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9967 3733..5138 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817054.952079-CDS-L-elsbetiae_contig9967:2180..23061622817054.952079-CDS-L-elsbetiae_contig9967:2180..2306Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9967 2181..2306 +
1691684013.0198667-CDS-L-elsbetiae_contig9967:2180..23061691684013.0198667-CDS-L-elsbetiae_contig9967:2180..2306Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9967 2181..2306 +
1622817054.9640765-CDS-L-elsbetiae_contig9967:2852..30051622817054.9640765-CDS-L-elsbetiae_contig9967:2852..3005Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9967 2853..3005 +
1691684013.0362303-CDS-L-elsbetiae_contig9967:2852..30051691684013.0362303-CDS-L-elsbetiae_contig9967:2852..3005Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9967 2853..3005 +
1622817054.975552-CDS-L-elsbetiae_contig9967:3501..37321622817054.975552-CDS-L-elsbetiae_contig9967:3501..3732Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9967 3502..3732 +
1691684013.0477247-CDS-L-elsbetiae_contig9967:3501..37321691684013.0477247-CDS-L-elsbetiae_contig9967:3501..3732Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9967 3502..3732 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9967.18893.1

>prot_L-elsbetiae_contig9967.18893.1 ID=prot_L-elsbetiae_contig9967.18893.1|Name=mRNA_L-elsbetiae_contig9967.18893.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=170bp
MALSPSCCGPTAPGPNDLVIHHRNYKAELTAEQYKKLVFEASDLKYEFYE
TVLRDAADSAAGRPETVWVVGEFSDDEPLFQQLQQEHGNVKKAGSVEDQF
HAFCFLMRAPRLVMAHSTFSWWAAFLGGAAEVHFPLTRQFEGVTGPSIAV
DEARYVYRDELGRVVPSPR*
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mRNA from alignment at L-elsbetiae_contig9967:2178..5138+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9967.18893.1 ID=mRNA_L-elsbetiae_contig9967.18893.1|Name=mRNA_L-elsbetiae_contig9967.18893.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2961bp|location=Sequence derived from alignment at L-elsbetiae_contig9967:2178..5138+ (Laminarionema elsbetiae ELsaHSoW15)
ATCATGGCCCTAAGCCCATCGTGCTGCGGCCCAACCGCCCCTGGACCCAA
CGACCTCGTGATCCATCACCGCAACTACAAGGCTGAGCTAACCGCGGAGC
AATACAAGAAGCTCGTCTTCGAGGCAAGCGTGTTGTCTGCGATTGTTTTG
TAATTCTTGCGTCGCGGGCTGCTGGATGGTGCGCTTTTGTTTTTTGGGCG
GAATGGGGGTGCTGTTTGACCGTCTCGTGCTACCTACACCTGGTCGTATG
TATGTATAGCCCAAAATCCTGTACGGCGAAAGTTGGATGAATTCATGGTG
CCGCAAGTCGATTTTGTTTTGCTTCTTTTTTGTGGGGGGCAGGCAATGGG
ACGCCGTGGGTAGAGATTGTGGGGCGGCCGGCCCTTGGTGATGCTCCTCT
GTGGTTTGCTGCACTTTGTATCCACCGGGGTGGGGCAAGAGCGCTGGCGC
CCTGAGTCGGAAAAAACGGCATTACCTGGCGCCAATCACGCTGCTGGTGC
GCCGCAAGGGTCCGGAATGCTTTGCTGATGAGCCGCGTACACATGTTAAA
AATATTTTTTTAACAGGCCGGGCTGTACACGGCTGGCGTTCAGTCGTAAG
CAGTAAAAACAATGAGCCGCGTCGCTTGCACACATTAAACATCTCCTCCC
CCCCACCCGCCCGGCACGGCAAAAGGACCTGAAGTACGAGTTTTACGAAA
CGGTCTTGCGAGACGCGGCCGATTCCGCCGCCGGGCGACCCGAAACGGTG
TGGGTCGTCGGGGAGTTCTCCGACGACGAGCCGCTGTTCCAACAACTGCA
GCAGGAGCACGGTAACGTCAAGAAGGCGGTAAGTACGTGTCGGAGTGTAT
GTATGACAAACGAAAAAAAAACAGTAAGAGCAAGGTTGGCACACAAGTGC
AGCGAAGGCAAGAAATACCCTTTAGCACGCATCGCTTTGTACGTCTGCCG
AGGTAAATACCGAGTTTTTTTTTCGTTTTTTCTGTGCGTTTCTTGTTCTC
TGTTTTATTTTTCGTCTAAATAGTGGCGCGCGGTGATTTCTTTTCCTACG
TCCTCGCCGCGCGCACCAGCGAAGGCGTGCGTGTGTTTCGCTTTGGCGCA
GGCCCCAAGTAGCTTGTTTTCGCCGTGCGCACCAGCGAAGGCGTGCGTGT
GTTTCGCTTTGGCGCAGGCCCCAGTGTAGCTTGTTCCTTTTTGACTCGCC
ATCTATCTGCCGGTCCACCCCTTACACGACTGAAACACTCGGAGTCAGAT
CTCGAACCTAAAAACAAATCATTCGTCACAACCTGCCCCCCCTTGGCGTC
TCGCGTCCCTTACATGGAGGGCAGGGATCGGTGGAAGACCAGTTCCACGC
CTTCTGTTTCCTGATGCGCGCCCCCCGCCTGGTGATGGCACACAGTACCT
TCAGCTGGTGGGCGGCCTTCCTCGGGGGCGCCGCGGAGGTTCACTTCCCG
CTGACTAGGCAATTCGAAGGGGTGACGGGGCCGAGTATTGCGGTGGATGA
GGCCCGCTACGTGTACCGAGACGAGCTTGGACGCGTGGTCCCTTCCCCTC
GGTAGCCGCCGGTCCCCTCGTTGATGTTTGCCCCCCCCCTCCCCCCCCCT
GGGCTGCAATAAGCGACTCCTGTGCACACAAACTGCTGTCGTAGGCCGAA
CATCGGGGGAAGAGTAAATAGTGCAGCCCATATCATTGTTTTGGCGGGGG
GGCAGCTTAGACATCCTGATGACGGGCAAGGGGGGTGCTATTCATGAACG
GATCCCCCCTGTATCAATTCCTACTTCGTACATGCTGGAGTGACAAACTG
ACCCATGACCCTAAAGAATGGGCAAGAGGGGGGGGGGGGCAGAGGTTCCC
GTACTGCAACCCGTATGCCCCTTTGGTGGAACACGGGGTGTGCTGTGTTT
GGACGGAGATAACCGGCGTCGTGAAGCTGCGCGTGAGATTTGATTGTCAC
GCTGCAAGCGGCGCGGTCTGAAGCCAGATAGATTCGGTCCAAGTAAAAAA
ACGTTATTTGGTTTTGGCATGCATGTCTGGGTTCGGAAGGTGAGGGGGGG
TTGGTGTGAGATTGGCGCAACGTTATGCCGTTGCCTGTTACAGAACACCT
ATAAGGAGTTGCGGCGCTTGCTGCGGTGTAGAAAAGTTTTTTATTTTGTT
TTTTTATTTGAAGAAAACTTGTTTTTTTTCTTCTCTGGGCAGCCTCATCA
ACTTCTGGTGGACCCGGTTTTTCGATGTCGGCAGGAGAGGTGCCGCCCCG
GATTGTGCCGGCCTGTGGTGTGGTTCGGATCGGTTCACTTGTTACCTTGT
TGCTTGTTGCGTGCTGGCTGTCCCGGTGATGTTGCACATTAAGTTGCATT
TTGAACCCGCTTTTGTGTACTGGTTAGGCTCCTCAGCCGCGCAGCCGCGC
ATTGCCCGATTAAACTATCTGGCGAAGTGCTGTCGTTGGTGATGGATTTT
TCTTTCGTGGTTTGCTACATAGTACGTACCACGGTAGGTTCCTGATCCGT
GACAGTACCTGATGTAAATACTGGGCAGTGTTTGTGGAACAGTGTGTGTG
TGACGAACAACGTATCGTTTCGGATGAATGGTTTTATTGGCGTTGGAAAG
GCCTGGACCTACCGCAGTGTTCAGGAGGCGTGGCACTTAAGGCAACCATG
TAAAACTGGCCGGGTCGTTTGGGATCTTTGTGTGTGCAGCAGTCGCCGCT
GAGTGGACGAACTCTGGAGTTTGGTTAGAATGGTGGGAGTCTATTTCGCC
GGAGGTACTTTATGTCTGGGAAAGCCGATCCCTGCTGTGAGCCATCGGTC
ATTGAGTCGCAACCTATCCCTTCTCGCGATGACGCCGTGGTGGAGATTTA
CGCTCGCTTGCGTCCGGGATGTGCTCTGGAGCCTTCGCGGACGCGCTTGA
CCCAAAAACGAAACACGTTCTATTTATGCAGACGGAAATATTGAATAAAT
TTGCCCCCCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9967:2178..5138+

>mRNA_L-elsbetiae_contig9967.18893.1 ID=mRNA_L-elsbetiae_contig9967.18893.1|Name=mRNA_L-elsbetiae_contig9967.18893.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1020bp|location=Sequence derived from alignment at L-elsbetiae_contig9967:2178..5138+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCCTAAGCCCATCGTGCTGCGGCCCAACCGCCCCTGGACCCAACGA
CCTCGTGATCCATCACCGCAACTACAAGGCTGAGCTAACCGCGGAGCAAT
ACAAGAAGCTCGTCTTCGAGGCAAGCATGGCCCTAAGCCCATCGTGCTGC
GGCCCAACCGCCCCTGGACCCAACGACCTCGTGATCCATCACCGCAACTA
CAAGGCTGAGCTAACCGCGGAGCAATACAAGAAGCTCGTCTTCGAGGCAA
GCGACCTGAAGTACGAGTTTTACGAAACGGTCTTGCGAGACGCGGCCGAT
TCCGCCGCCGGGCGACCCGAAACGGTGTGGGTCGTCGGGGAGTTCTCCGA
CGACGAGCCGCTGTTCCAACAACTGCAGCAGGAGCACGGTAACGTCAAGA
AGGCGGACCTGAAGTACGAGTTTTACGAAACGGTCTTGCGAGACGCGGCC
GATTCCGCCGCCGGGCGACCCGAAACGGTGTGGGTCGTCGGGGAGTTCTC
CGACGACGAGCCGCTGTTCCAACAACTGCAGCAGGAGCACGGTAACGTCA
AGAAGGCGGGATCGGTGGAAGACCAGTTCCACGCCTTCTGTTTCCTGATG
CGCGCCCCCCGCCTGGTGATGGCACACAGTACCTTCAGCTGGTGGGCGGC
CTTCCTCGGGGGCGCCGCGGAGGTTCACTTCCCGCTGACTAGGCAATTCG
AAGGGGTGACGGGGCCGAGTATTGCGGTGGATGAGGCCCGCTACGTGTAC
CGAGACGAGCTTGGACGCGTGGTCCCTTCCCCTCGGTAGGGATCGGTGGA
AGACCAGTTCCACGCCTTCTGTTTCCTGATGCGCGCCCCCCGCCTGGTGA
TGGCACACAGTACCTTCAGCTGGTGGGCGGCCTTCCTCGGGGGCGCCGCG
GAGGTTCACTTCCCGCTGACTAGGCAATTCGAAGGGGTGACGGGGCCGAG
TATTGCGGTGGATGAGGCCCGCTACGTGTACCGAGACGAGCTTGGACGCG
TGGTCCCTTCCCCTCGGTAG
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