mRNA_L-elsbetiae_contig9967.18894.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9967.18894.1
Unique NamemRNA_L-elsbetiae_contig9967.18894.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9967.18894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9967contigL-elsbetiae_contig9967:5783..6461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size503
Cds size411
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9967.18894.1prot_L-elsbetiae_contig9967.18894.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9967 5873..6461 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817054.854064-UTR-L-elsbetiae_contig9967:5782..58721622817054.854064-UTR-L-elsbetiae_contig9967:5782..5872Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9967 5783..5872 -
1691684012.9530826-UTR-L-elsbetiae_contig9967:5782..58721691684012.9530826-UTR-L-elsbetiae_contig9967:5782..5872Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9967 5783..5872 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817054.8661084-CDS-L-elsbetiae_contig9967:5872..61631622817054.8661084-CDS-L-elsbetiae_contig9967:5872..6163Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9967 5873..6163 -
1691684012.9653802-CDS-L-elsbetiae_contig9967:5872..61631691684012.9653802-CDS-L-elsbetiae_contig9967:5872..6163Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9967 5873..6163 -
1622817054.8770385-CDS-L-elsbetiae_contig9967:6341..64611622817054.8770385-CDS-L-elsbetiae_contig9967:6341..6461Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9967 6342..6461 -
1691684012.9770896-CDS-L-elsbetiae_contig9967:6341..64611691684012.9770896-CDS-L-elsbetiae_contig9967:6341..6461Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9967 6342..6461 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9967.18894.1

>prot_L-elsbetiae_contig9967.18894.1 ID=prot_L-elsbetiae_contig9967.18894.1|Name=mRNA_L-elsbetiae_contig9967.18894.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=137bp
AVRVLHEVQLGSNLKLLPEGTRRISRGDQGGGSFEPRPAQIQFQHKDDSA
GDDNRDGRAWPSRASTPHGAYHVLHGSEVRQVAGSTDPQRENAAQQNPTT
KAEAGGSGGSGGAATATAAATAAAGTSAGGLPERLV*
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mRNA from alignment at L-elsbetiae_contig9967:5783..6461-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9967.18894.1 ID=mRNA_L-elsbetiae_contig9967.18894.1|Name=mRNA_L-elsbetiae_contig9967.18894.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=679bp|location=Sequence derived from alignment at L-elsbetiae_contig9967:5783..6461- (Laminarionema elsbetiae ELsaHSoW15)
GCTGTTCGCGTGCTCCACGAAGTCCAACTTGGGTCCAACCTTAAGCTTCT
TCCGGAAGGAACTCGGAGGATCTCCCGAGGAGATCAGGGAGGTGGTTCTT
TCGAACCCCGGCCTGCTCAGGCGAGGGTTTGCTGCTGCTGATGCTATTTG
CTGCTCTTTCAGCGGGTTTTTGGTGCGTTTTGTGTTGTTTGTGTTGACGC
GAAGCTCCTGGTGCTGCGATAGTATGTATTTACCATGTTGACTTTTCGGT
GGTGCGGTTTCGCTGCCTTTGTCGCTGTTATGTTATGCTGATAACCAGAT
ACAGTTTCAACACAAGGATGATTCCGCGGGCGACGATAATCGAGACGGCC
GGGCTTGGCCCTCCCGCGCTTCGACACCACATGGGGCTTATCACGTACTA
CACGGGTCTGAGGTTCGACAAGTGGCTGGATCCACAGATCCGCAAAGAGA
GAATGCGGCGCAGCAAAACCCGACAACAAAGGCGGAGGCTGGTGGTAGTG
GTGGTAGTGGAGGTGCCGCTACTGCTACCGCCGCTGCTACTGCCGCTGCC
GGTACTTCTGCTGGGGGACTACCTGAGAGATTAGTTTGAGCGACCCCGAA
AGGCCGCAAGACGAGGCGGCCATGCCAACGACGGTGGAGCACATCCACCT
CCTGCACAGCCGTCTTGAGGAGACAGACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9967:5783..6461-

>mRNA_L-elsbetiae_contig9967.18894.1 ID=mRNA_L-elsbetiae_contig9967.18894.1|Name=mRNA_L-elsbetiae_contig9967.18894.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=822bp|location=Sequence derived from alignment at L-elsbetiae_contig9967:5783..6461- (Laminarionema elsbetiae ELsaHSoW15)
GCTGTTCGCGTGCTCCACGAAGTCCAACTTGGGTCCAACCTTAAGCTTCT
TCCGGAAGGAACTCGGAGGATCTCCCGAGGAGATCAGGGAGGTGGTTCTT
TCGAACCCCGGCCTGCTCAGGCTGTTCGCGTGCTCCACGAAGTCCAACTT
GGGTCCAACCTTAAGCTTCTTCCGGAAGGAACTCGGAGGATCTCCCGAGG
AGATCAGGGAGGTGGTTCTTTCGAACCCCGGCCTGCTCAGATACAGTTTC
AACACAAGGATGATTCCGCGGGCGACGATAATCGAGACGGCCGGGCTTGG
CCCTCCCGCGCTTCGACACCACATGGGGCTTATCACGTACTACACGGGTC
TGAGGTTCGACAAGTGGCTGGATCCACAGATCCGCAAAGAGAGAATGCGG
CGCAGCAAAACCCGACAACAAAGGCGGAGGCTGGTGGTAGTGGTGGTAGT
GGAGGTGCCGCTACTGCTACCGCCGCTGCTACTGCCGCTGCCGGTACTTC
TGCTGGGGGACTACCTGAGAGATTAGTTTGAATACAGTTTCAACACAAGG
ATGATTCCGCGGGCGACGATAATCGAGACGGCCGGGCTTGGCCCTCCCGC
GCTTCGACACCACATGGGGCTTATCACGTACTACACGGGTCTGAGGTTCG
ACAAGTGGCTGGATCCACAGATCCGCAAAGAGAGAATGCGGCGCAGCAAA
ACCCGACAACAAAGGCGGAGGCTGGTGGTAGTGGTGGTAGTGGAGGTGCC
GCTACTGCTACCGCCGCTGCTACTGCCGCTGCCGGTACTTCTGCTGGGGG
ACTACCTGAGAGATTAGTTTGA
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