mRNA_L-elsbetiae_contig9958.18887.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9958.18887.1
Unique NamemRNA_L-elsbetiae_contig9958.18887.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig9958.18887.1 vs. uniprot
Match: D8LRN1_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LRN1_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 1.250e-37
Identity = 74/134 (55.22%), Postives = 94/134 (70.15%), Query Frame = 3
Query:    3 GACVVGTANGMGSGGTPISSTYTGYIHDKCPECKWGDLDFSASGDGRWEIEWEFVPCPVDGISFSFEGSHDWYWKIQPH-SSTPVVDLTINGVPAARSDDNFF-ILEQYIGFTAA--VVTTTVGGVTRTNEVTV 392
            GACV GTA+G GSG  PI ST+  +I DKCPEC+ GDLDFS SGDGRW+IEW+FV CP +  SF    ++ +YWK+QP  ++TPVV LT++G  A R+ DN F +      ++ A  VVTTTV GVT T EV+V
Sbjct:  153 GACVEGTASGSGSGNNPIPSTFKAFITDKCPECQKGDLDFSMSGDGRWDIEWKFVACPGEETSFVSPSANPYYWKVQPRGTTTPVVSLTVDGQSAMRTTDNHFEVHNDGAAWSGAQTVVTTTVSGVTETAEVSV 286          
BLAST of mRNA_L-elsbetiae_contig9958.18887.1 vs. uniprot
Match: F2Z7J0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis andersonii TaxID=408198 RepID=F2Z7J0_9FLOR)

HSP 1 Score: 132 bits (333), Expect = 4.230e-33
Identity = 54/111 (48.65%), Postives = 77/111 (69.37%), Query Frame = 3
Query:    3 GACVVGTANGMGSGGTPISSTYTGYIHDKCPECKWGDLDFSASGDGRWEIEWEFVPCPVDGISFSFEGSHDWYWKIQPHS-STPVVDLTINGVPAARSDDNFFILEQYIGF 332
            GAC++ T  G GSG  P+  T+  Y+HD+CPECK+GD+D S SGDGRW+++W F+PCP + + F FEGS+ +Y K+QP    TPV   ++NG    ++ DNF+IL+   GF
Sbjct:   69 GACLLVTGYGQGSGANPVVGTFKAYVHDRCPECKYGDIDLSKSGDGRWKVQWRFIPCPGEWVFFLFEGSNRFYLKLQPRGLKTPVTYFSVNGQQGTKTQDNFYILQNGGGF 179          
BLAST of mRNA_L-elsbetiae_contig9958.18887.1 vs. uniprot
Match: D8LHU1_ECTSI (Putative lipoprotein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHU1_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 5.400e-31
Identity = 58/107 (54.21%), Postives = 72/107 (67.29%), Query Frame = 3
Query:    3 GACVVGTANGMGSGGTPISSTYTGYIHDKCPECKWGDLDFSASGDGRWEIEWEFVPCPVDGI-SFSFEGSHDWYWKIQPHSS-TPVVDLTINGVPAARSDDNFFILE 317
            GAC+ G   G G G  P+   +  Y+ D+CPEC +GDLDF+A GDGRW+I W FVPC      +F FEGS+++YWKIQP    +PV  L ING  A RS+DNFFILE
Sbjct:   88 GACIEGEGFGEGEGRDPVEGAFKAYVTDRCPECLFGDLDFAADGDGRWDISWHFVPCEGGSDQTFLFEGSNEFYWKIQPRGGRSPVERLWINGDEAERSEDNFFILE 194          
BLAST of mRNA_L-elsbetiae_contig9958.18887.1 vs. uniprot
Match: A0A2V3ISL2_9FLOR (Expansin-YoaJ n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISL2_9FLOR)

HSP 1 Score: 126 bits (317), Expect = 9.560e-31
Identity = 53/111 (47.75%), Postives = 74/111 (66.67%), Query Frame = 3
Query:    3 GACVVGTANGMGSGGTPISSTYTGYIHDKCPECKWGDLDFSASGDGRWEIEWEFVPCPVDGISFSFEGSHDWYWKIQPHS-STPVVDLTINGVPAARSDDNFFILEQYIGF 332
            GAC+  T  G GSG  PI  T+  Y+HD+CPECK+GD+D S  GDGRW + W+F+PCP + + F FEGS+ +Y K+QP    TPV  L++ G    ++ DNF+I++   GF
Sbjct:   74 GACLQVTGYGQGSGANPIRGTFKAYVHDRCPECKYGDIDLSKGGDGRWRVHWKFIPCPGEFVFFLFEGSNRYYLKLQPRGLKTPVSALSVGGQWGTKTQDNFYIVQNGGGF 184          
BLAST of mRNA_L-elsbetiae_contig9958.18887.1 vs. uniprot
Match: A0A6H5KBW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW3_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 8.080e-30
Identity = 70/135 (51.85%), Postives = 82/135 (60.74%), Query Frame = 3
Query:    3 GACVVGTANGMGSGGTPISSTYTGYIHDKCPECKWGDLDFSASGDGRWEIEWEFVPCPVDGISFSFEGSHDWYWKIQPH-SSTPVVDLTINGVPAARSDDNFFILEQYIGFT----AAVVTTTVGGVTRTNEVTV 392
            G+CV G   G G G  PI  T+ G+I DKCPEC  GDLDF    DGRW+IEW FV CP + +SF       +YWKIQP  ++TPV  LTI G  AAR+DDN F LE   G        VVTTTVGGV    E++V
Sbjct:  397 GSCVEGEGTGGGGGDNPIG-TFKGFIMDKCPECHEGDLDFGTGLDGRWDIEWRFVACPGEEVSFKVVEMTPYYWKIQPRGTATPVESLTIGGRAAARTDDNHFELEHPSGNPWYEPQMVVTTTVGGVVEETEMSV 530          
BLAST of mRNA_L-elsbetiae_contig9958.18887.1 vs. uniprot
Match: A0A2P6NBD6_9EUKA (Endochitinase-like n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NBD6_9EUKA)

HSP 1 Score: 95.5 bits (236), Expect = 4.730e-18
Identity = 44/113 (38.94%), Postives = 69/113 (61.06%), Query Frame = 3
Query:    3 GACVVGTANGMGSGGTPISSTYTGYIHDKCPECKWGDLDFSASGDGRWEIEWEFVPCPV--DGISFSFEGSHDWYWKIQPHSS-TPVVDLTINGVPAA------RSDDNFFIL 314
            G+C+  T +G G+G  P+   +T +++D+CP C  G LDF+ +GDG W+I W+ V CPV   GI ++F+GS++WY K+Q  +  TP+  ++I            R+ DNFF L
Sbjct:  384 GSCIQITGSGKGAGSNPVKGNFTAFVNDQCPTCVPGGLDFAKNGDGLWDISWKVVDCPVGNSGIYYAFQGSNEWYMKVQARNHRTPLNFISIQDPNTKQYRKMKRTGDNFFEL 496          
BLAST of mRNA_L-elsbetiae_contig9958.18887.1 vs. uniprot
Match: A0A2P6NBF0_9EUKA (MAP/microtubule affinity-regulating kinase 3-like n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NBF0_9EUKA)

HSP 1 Score: 95.5 bits (236), Expect = 5.070e-18
Identity = 44/113 (38.94%), Postives = 69/113 (61.06%), Query Frame = 3
Query:    3 GACVVGTANGMGSGGTPISSTYTGYIHDKCPECKWGDLDFSASGDGRWEIEWEFVPCPV--DGISFSFEGSHDWYWKIQPHSS-TPVVDLTINGVPAA------RSDDNFFIL 314
            G+C+  T +G G+G  P+   +T +++D+CP C  G LDF+ +GDG W+I W+ V CPV   GI ++F+GS++WY K+Q  +  TP+  ++I            R+ DNFF L
Sbjct:  777 GSCIQITGSGKGAGSNPVKGNFTAFVNDQCPTCVPGGLDFAKNGDGLWDISWKVVDCPVGNSGIYYAFQGSNEWYMKVQARNHRTPLNFISIQDPNTKQYRKMKRTGDNFFEL 889          
BLAST of mRNA_L-elsbetiae_contig9958.18887.1 vs. uniprot
Match: K1QR45_CRAGI (Expansin-yoaJ n=1 Tax=Crassostrea gigas TaxID=29159 RepID=K1QR45_CRAGI)

HSP 1 Score: 82.4 bits (202), Expect = 1.010e-14
Identity = 33/70 (47.14%), Postives = 48/70 (68.57%), Query Frame = 3
Query:   30 GMGSGGTPISSTYTGYIHDKCPECKWGDLDFSASGDGRWEIEWEFVPCPVDG--ISFSFEGSHDWYWKIQ 233
            G G+G  PI+ T+T ++ D CPEC  G LD + +GDGRW+IE + + CPV    I + F+GS++WY K+Q
Sbjct:   85 GQGAGNDPITGTFTAFVKDLCPECHAGALDLAENGDGRWKIEIQAIQCPVGNGKIEYKFQGSNNWYLKLQ 154          
BLAST of mRNA_L-elsbetiae_contig9958.18887.1 vs. uniprot
Match: A0A6B2LH25_9EUKA (Uncharacterized protein (Fragment) n=2 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LH25_9EUKA)

HSP 1 Score: 78.6 bits (192), Expect = 1.340e-13
Identity = 44/117 (37.61%), Postives = 63/117 (53.85%), Query Frame = 3
Query:    3 GACVVGTANGMGSGGT--PISSTYTGYIHDKCPECKWGDLDFSASGDGRWEIEWEFVPCPVDG-ISFSFE-GSHDWYWKIQPHS---STPVVDLTING--VPAARSDDNFFILEQYI 326
            G C+     G GSG +  P    +  YI+++CPEC   ++D + + DGRW+IEWE VPCP+ G IS   + GS ++Y  I P         V+L + G  V A R   N+FI  Q +
Sbjct:   27 GTCIKIYPLGTGSGNSDFPTRPPFVAYINNQCPECGSANVDLAQTSDGRWDIEWEVVPCPISGKISLQLKTGSSEYYTAIAPRDFIVGVQSVELLVGGSWVSADRQSYNYFIYSQRV 143          
BLAST of mRNA_L-elsbetiae_contig9958.18887.1 vs. uniprot
Match: A0A6B2LD32_9EUKA (Uncharacterized protein n=2 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LD32_9EUKA)

HSP 1 Score: 78.6 bits (192), Expect = 3.410e-13
Identity = 44/117 (37.61%), Postives = 63/117 (53.85%), Query Frame = 3
Query:    3 GACVVGTANGMGSGGT--PISSTYTGYIHDKCPECKWGDLDFSASGDGRWEIEWEFVPCPVDG-ISFSFE-GSHDWYWKIQPHS---STPVVDLTING--VPAARSDDNFFILEQYI 326
            G C+     G GSG +  P    +  YI+++CPEC   ++D + + DGRW+IEWE VPCP+ G IS   + GS ++Y  I P         V+L + G  V A R   N+FI  Q +
Sbjct:   27 GTCIKIYPLGTGSGNSDFPTRPPFVAYINNQCPECGSANVDLAQTSDGRWDIEWEVVPCPISGKISLQLKTGSSEYYTAIAPRDFIVGVQSVELLVGGSWVSADRQSYNYFIYSQRV 143          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9958.18887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRN1_ECTSI1.250e-3755.22Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
F2Z7J0_9FLOR4.230e-3348.65Uncharacterized protein n=1 Tax=Gracilariopsis and... [more]
D8LHU1_ECTSI5.400e-3154.21Putative lipoprotein n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A2V3ISL2_9FLOR9.560e-3147.75Expansin-YoaJ n=1 Tax=Gracilariopsis chorda TaxID=... [more]
A0A6H5KBW3_9PHAE8.080e-3051.85Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A2P6NBD6_9EUKA4.730e-1838.94Endochitinase-like n=1 Tax=Planoprotostelium fungi... [more]
A0A2P6NBF0_9EUKA5.070e-1838.94MAP/microtubule affinity-regulating kinase 3-like ... [more]
K1QR45_CRAGI1.010e-1447.14Expansin-yoaJ n=1 Tax=Crassostrea gigas TaxID=2915... [more]
A0A6B2LH25_9EUKA1.340e-1337.61Uncharacterized protein (Fragment) n=2 Tax=Arcella... [more]
A0A6B2LD32_9EUKA3.410e-1337.61Uncharacterized protein n=2 Tax=Arcella intermedia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9958contigL-elsbetiae_contig9958:3084..4435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.0
Seed ortholog evalue3.9e-28
Seed eggNOG ortholog2880.D8LRN1
KEGG koko:K20628
Hectar predicted targeting categoryother localisation
EggNOG OGs2D16Q@1,2SGXE@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons2
Model size954
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9958.18887.1prot_L-elsbetiae_contig9958.18887.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9958 3640..4403 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817054.5723395-UTR-L-elsbetiae_contig9958:3083..36391622817054.5723395-UTR-L-elsbetiae_contig9958:3083..3639Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9958 3084..3639 -
1691684012.782547-UTR-L-elsbetiae_contig9958:3083..36391691684012.782547-UTR-L-elsbetiae_contig9958:3083..3639Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9958 3084..3639 -
1622817054.6112418-UTR-L-elsbetiae_contig9958:4403..44351622817054.6112418-UTR-L-elsbetiae_contig9958:4403..4435Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9958 4404..4435 -
1691684012.8233445-UTR-L-elsbetiae_contig9958:4403..44351691684012.8233445-UTR-L-elsbetiae_contig9958:4403..4435Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9958 4404..4435 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817054.5857754-CDS-L-elsbetiae_contig9958:3639..39491622817054.5857754-CDS-L-elsbetiae_contig9958:3639..3949Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9958 3640..3949 -
1691684012.7982738-CDS-L-elsbetiae_contig9958:3639..39491691684012.7982738-CDS-L-elsbetiae_contig9958:3639..3949Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9958 3640..3949 -
1622817054.5978835-CDS-L-elsbetiae_contig9958:4347..44031622817054.5978835-CDS-L-elsbetiae_contig9958:4347..4403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9958 4348..4403 -
1691684012.813962-CDS-L-elsbetiae_contig9958:4347..44031691684012.813962-CDS-L-elsbetiae_contig9958:4347..4403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9958 4348..4403 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9958.18887.1

>prot_L-elsbetiae_contig9958.18887.1 ID=prot_L-elsbetiae_contig9958.18887.1|Name=mRNA_L-elsbetiae_contig9958.18887.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
MGSGGTPISSTYTGYIHDKCPECKWGDLDFSASGDGRWEIEWEFVPCPVD
GISFSFEGSHDWYWKIQPHSSTPVVDLTINGVPAARSDDNFFILEQYIGF
TAAVVTTTVGGVTRTNEVTVS*
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mRNA from alignment at L-elsbetiae_contig9958:3084..4435-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9958.18887.1 ID=mRNA_L-elsbetiae_contig9958.18887.1|Name=mRNA_L-elsbetiae_contig9958.18887.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1352bp|location=Sequence derived from alignment at L-elsbetiae_contig9958:3084..4435- (Laminarionema elsbetiae ELsaHSoW15)
GCGGCGCATGCGTGGTGGGAACTGCCAACGGCATGGGATCGGGGGGCACC CCAATCTCTAGCACCTACACGGGTTACATCCACGACAAGTAAGCGATAAT GTCTCCCGTGACGATTCTGTTCTTTTTTCCGGCCGTTTTTTGCGCCACAA GAGCATGCCGCCGCCGCAATCGTCTCCTGCGATTTCGATGATGCTCAACT TTTCTGCACGTTCAAACTACTGTTGTGCACCTGACCTCCCAGCCTCCGCC CCCCTCCATATCTTGTCTAGGGGGCATTGCTGTATACTGTCTTTCGCTCT TGCCAGTGAACAATTAATGATATCAAAAGCAGCATTGCTTTCTACCAATA CTCTTTGCTTCTTAAGCACCCATTTCCCAATTTAAGCACCCATTTCCCTA TCCCCGCCCCCCTCTAAATCTTTCCCGCCATCTTGTCTCCTGATTTCGGC TTTGCCCGCCCGTCAAAAACCCTTTCAACGCCAAAGGTGCCCTGAGTGTA AATGGGGTGACCTCGACTTCTCCGCATCTGGCGACGGCCGGTGGGAAATC GAGTGGGAATTCGTCCCGTGCCCGGTTGACGGAATCTCGTTCTCGTTCGA GGGCAGCCATGACTGGTACTGGAAGATCCAGCCCCACTCCAGTACACCCG TGGTCGACCTGACTATCAACGGTGTGCCGGCGGCGAGATCAGACGACAAC TTCTTCATTCTGGAGCAGTACATCGGGTTCACAGCGGCCGTCGTCACCAC GACCGTCGGGGGCGTCACTCGGACCAATGAAGTCACGGTCTCGTAAACGA TGTTTGGAGTGCTGGCGGTTGGCTGAGGGAGGGAAATAAGCTCAGGAACA CTGCAATATAGAAAATAAGAGCTGGTTATTCTGAGTTTGTTTTCTGAGCC GTTGGGATAATTCGGGGTTTCGCAAACGGGGCTGAAGAGAAAGCGTTTTG TCGAAGTTGGCGGGTTGTTTTGGCTGCGCCCGGTTTGAATGCTGCGCGTT GGTTTTGGTTTTATGTCTGCTTACCCTATTTCTCTTCTGCTATTGAATGC TGCGCGTTGGTTTTGGTTTTATGTCTGCTTACCCCATTTCTCTTCTGCTA TTTGCCTCCTTTTTGCCGGTCACCGGCATGCCTCTACGCGTCCCTGCCTC TTCGCCCTTCGGCGTTTCGCCTCTGGCTTGCTTACCTTTTAGTATGCTCC GTTGCCGCTTGGCTTGTTGGCGTCTTGGTCTGCTCGGATCCCTCCTATTC GGCTGGTCGCCGGCATGCCTCTACGCGCGTCGCCGCCTCTTTGATCCTTG GCTCCTCGCCTCTTTTGGCCTGCTTGCCGTTTTGTTTGCTATTCGTTGCC GC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9958:3084..4435-

>mRNA_L-elsbetiae_contig9958.18887.1 ID=mRNA_L-elsbetiae_contig9958.18887.1|Name=mRNA_L-elsbetiae_contig9958.18887.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig9958:3084..4435- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGATCGGGGGGCACCCCAATCTCTAGCACCTACACGGGTTACATCCA
CGACAAATGGGATCGGGGGGCACCCCAATCTCTAGCACCTACACGGGTTA
CATCCACGACAAGTGCCCTGAGTGTAAATGGGGTGACCTCGACTTCTCCG
CATCTGGCGACGGCCGGTGGGAAATCGAGTGGGAATTCGTCCCGTGCCCG
GTTGACGGAATCTCGTTCTCGTTCGAGGGCAGCCATGACTGGTACTGGAA
GATCCAGCCCCACTCCAGTACACCCGTGGTCGACCTGACTATCAACGGTG
TGCCGGCGGCGAGATCAGACGACAACTTCTTCATTCTGGAGCAGTACATC
GGGTTCACAGCGGCCGTCGTCACCACGACCGTCGGGGGCGTCACTCGGAC
CAATGAAGTCACGGTCTCGTAAGTGCCCTGAGTGTAAATGGGGTGACCTC
GACTTCTCCGCATCTGGCGACGGCCGGTGGGAAATCGAGTGGGAATTCGT
CCCGTGCCCGGTTGACGGAATCTCGTTCTCGTTCGAGGGCAGCCATGACT
GGTACTGGAAGATCCAGCCCCACTCCAGTACACCCGTGGTCGACCTGACT
ATCAACGGTGTGCCGGCGGCGAGATCAGACGACAACTTCTTCATTCTGGA
GCAGTACATCGGGTTCACAGCGGCCGTCGTCACCACGACCGTCGGGGGCG
TCACTCGGACCAATGAAGTCACGGTCTCGTAA
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