mRNA_L-elsbetiae_contig9958.18888.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9958.18888.1
Unique NamemRNA_L-elsbetiae_contig9958.18888.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9958.18888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9958contigL-elsbetiae_contig9958:4738..5423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size271
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817054.5295508-CDS-L-elsbetiae_contig9958:4737..49081622817054.5295508-CDS-L-elsbetiae_contig9958:4737..4908Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9958 4738..4908 -
1691684012.7540045-CDS-L-elsbetiae_contig9958:4737..49081691684012.7540045-CDS-L-elsbetiae_contig9958:4737..4908Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9958 4738..4908 -
1622817054.540531-CDS-L-elsbetiae_contig9958:5324..54231622817054.540531-CDS-L-elsbetiae_contig9958:5324..5423Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9958 5325..5423 -
1691684012.7674212-CDS-L-elsbetiae_contig9958:5324..54231691684012.7674212-CDS-L-elsbetiae_contig9958:5324..5423Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9958 5325..5423 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9958.18888.1prot_L-elsbetiae_contig9958.18888.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9958 4738..5423 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9958.18888.1

>prot_L-elsbetiae_contig9958.18888.1 ID=prot_L-elsbetiae_contig9958.18888.1|Name=mRNA_L-elsbetiae_contig9958.18888.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=90bp
ETPTPEPTPGPVTPEAEPTPEPSPEPTPEPVSPVPETPAPQPVASPEPEP
QPVEGGQYGTTFTGDGTYYGFTSGGNCGFSDHVPGFYAGM
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mRNA from alignment at L-elsbetiae_contig9958:4738..5423-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9958.18888.1 ID=mRNA_L-elsbetiae_contig9958.18888.1|Name=mRNA_L-elsbetiae_contig9958.18888.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=686bp|location=Sequence derived from alignment at L-elsbetiae_contig9958:4738..5423- (Laminarionema elsbetiae ELsaHSoW15)
GAGACGCCCACCCCCGAACCGACACCTGGACCTGTCACGCCGGAGGCAGA
GCCGACACCCGAGCCTTCCCCGGAACCTACCCCGGAACCTGTCTCGCCGG
TGAGTACGCACTCTAGCCGGGGGCGGCGACACTCGTGCCAAGCCCTGATG
AATGGACACTCGTGTGATTTCCTTACTTTTCGAGACTTGTGATAATAAAG
TTGAATTCAAACGTTGCTCGTCTCGGTCTGAAGGAGTGGAGCAAACTTGT
AAGTTCGTGTCAATTTCCCCTTCCCCATCGCTCGGCGGTTTCGTGCGAAT
ACTACACACCATGTTGCATGTGTATATACATATATGACAAGTGAACGCAA
CCAGTGTTTTATTGCGCGAAGTGTTTCTTATTCGGCGCCCGCGGCTGCGG
CGCAAGGCCGTGGTCGTGACGTCATCCACGATGTGCTTACGCACGTGAGG
GGAACGGCGGAGGTGTCATGTAAAGACAGCCCTCGAATTCTCCATTCAAT
TCAAATGCAACCTAGGTGCCTGAGACGCCGGCCCCCCAACCCGTGGCATC
GCCGGAACCCGAACCGCAACCGGTCGAGGGCGGGCAGTACGGCACCACGT
TCACCGGCGACGGGACCTACTACGGCTTCACCAGCGGCGGAAACTGCGGC
TTCAGCGACCATGTGCCGGGCTTTTACGCGGGAATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9958:4738..5423-

>mRNA_L-elsbetiae_contig9958.18888.1 ID=mRNA_L-elsbetiae_contig9958.18888.1|Name=mRNA_L-elsbetiae_contig9958.18888.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=540bp|location=Sequence derived from alignment at L-elsbetiae_contig9958:4738..5423- (Laminarionema elsbetiae ELsaHSoW15)
GAGACGCCCACCCCCGAACCGACACCTGGACCTGTCACGCCGGAGGCAGA
GCCGACACCCGAGCCTTCCCCGGAACCTACCCCGGAACCTGTCTCGCCGG
AGACGCCCACCCCCGAACCGACACCTGGACCTGTCACGCCGGAGGCAGAG
CCGACACCCGAGCCTTCCCCGGAACCTACCCCGGAACCTGTCTCGCCGGT
GCCTGAGACGCCGGCCCCCCAACCCGTGGCATCGCCGGAACCCGAACCGC
AACCGGTCGAGGGCGGGCAGTACGGCACCACGTTCACCGGCGACGGGACC
TACTACGGCTTCACCAGCGGCGGAAACTGCGGCTTCAGCGACCATGTGCC
GGGCTTTTACGCGGGAATGGTGCCTGAGACGCCGGCCCCCCAACCCGTGG
CATCGCCGGAACCCGAACCGCAACCGGTCGAGGGCGGGCAGTACGGCACC
ACGTTCACCGGCGACGGGACCTACTACGGCTTCACCAGCGGCGGAAACTG
CGGCTTCAGCGACCATGTGCCGGGCTTTTACGCGGGAATG
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