mRNA_L-elsbetiae_contig9954.18886.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9954.18886.1
Unique NamemRNA_L-elsbetiae_contig9954.18886.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig9954.18886.1 vs. uniprot
Match: A0A6H5JNL8_9PHAE (Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNL8_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 5.370e-67
Identity = 104/127 (81.89%), Postives = 115/127 (90.55%), Query Frame = 1 
Query:    4 SQIECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEETETFPFVDGIAGIVASWVLSPVLSGFIAVALFLFVRTFVLRSPDSAKRSIAIFPFLVIATI 384
            ++IECF DNPGILMYGNMCVVYTTGIWLLLAS+ ELPVSTTHSTIGGIVGMAMTYRG DCVVWYEE + FP++ GI+ IVASWVLSPVLS  IAVALFLF+RTFVLRSPDS +R+I +FPFLV ATI
Sbjct:    3 AKIECFTDNPGILMYGNMCVVYTTGIWLLLASYFELPVSTTHSTIGGIVGMAMTYRGADCVVWYEEADLFPYLKGISAIVASWVLSPVLSAVIAVALFLFMRTFVLRSPDSHQRAIVVFPFLVTATI 129
[Close]
BLAST of mRNA_L-elsbetiae_contig9954.18886.1 vs. uniprot
Match: D7G0K9_ECTSI (Phosphate transporter n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0K9_ECTSI)

HSP 1 Score: 219 bits (557), Expect = 7.940e-67
Identity = 104/124 (83.87%), Postives = 113/124 (91.13%), Query Frame = 1 
Query:   13 ECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEETETFPFVDGIAGIVASWVLSPVLSGFIAVALFLFVRTFVLRSPDSAKRSIAIFPFLVIATI 384
            ECFEDNPGILMYGNMCVVYTTG WLLLASF ELPVSTTHSTIGGIVGMA+TYRGPDCVVWYE+ + FP++ GI+ IVASWVLSPVLS  IAVALFLF+RTFVLRSPDS KR+I +FPFLV ATI
Sbjct:   91 ECFEDNPGILMYGNMCVVYTTGFWLLLASFFELPVSTTHSTIGGIVGMAITYRGPDCVVWYEKADLFPYLKGISAIVASWVLSPVLSAVIAVALFLFMRTFVLRSPDSHKRAIVVFPFLVTATI 214
[Close]
BLAST of mRNA_L-elsbetiae_contig9954.18886.1 vs. uniprot
Match: A0A6H5JNE7_9PHAE (Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE7_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 1.700e-65
Identity = 101/127 (79.53%), Postives = 113/127 (88.98%), Query Frame = 1 
Query:    4 SQIECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEETETFPFVDGIAGIVASWVLSPVLSGFIAVALFLFVRTFVLRSPDSAKRSIAIFPFLVIATI 384
            + IECFEDNPGILMYGNMCVVYTTGIWLLLASF ELPVSTTHST+GGIVGMAMTYRG DCVVWYEE + FP++ G++ IVASW LSP+ S  IAVALFLF+RTFVLRSPD+ KR+I +FPFLV ATI
Sbjct:   87 ADIECFEDNPGILMYGNMCVVYTTGIWLLLASFFELPVSTTHSTVGGIVGMAMTYRGADCVVWYEEADLFPYLKGVSAIVASWALSPLFSAVIAVALFLFMRTFVLRSPDAHKRAINVFPFLVTATI 213
[Close]
BLAST of mRNA_L-elsbetiae_contig9954.18886.1 vs. uniprot
Match: D7FWT9_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWT9_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 2.090e-58
Identity = 93/126 (73.81%), Postives = 106/126 (84.13%), Query Frame = 1 
Query:    7 QIECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEETETFPFVDGIAGIVASWVLSPVLSGFIAVALFLFVRTFVLRSPDSAKRSIAIFPFLVIATI 384
            Q+ CF DNPGILMYGNMCVVYT+G WLLLASF ELPVSTTH+T+GGIVGMAMTYRG DCVVWYEE E FP++ G++ IVASW LSPVLS  IAVAL+ F+RTFVLR+  S K++I IFP LV  TI
Sbjct:   96 QVGCFVDNPGILMYGNMCVVYTSGFWLLLASFFELPVSTTHATVGGIVGMAMTYRGADCVVWYEEAEFFPYLKGVSAIVASWALSPVLSAVIAVALYFFMRTFVLRADQSQKKAINIFPCLVTVTI 221
[Close]
BLAST of mRNA_L-elsbetiae_contig9954.18886.1 vs. uniprot
Match: D7FZJ7_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ7_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 4.200e-55
Identity = 89/127 (70.08%), Postives = 98/127 (77.17%), Query Frame = 1 
Query:    4 SQIECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEETETFPFVDGIAGIVASWVLSPVLSGFIAVALFLFVRTFVLRSPDSAKRSIAIFPFLVIATI 384
            + IECF DNPGILMYGNMCVVYT GIWLLLASF ELPVSTTHSTIGGIVGM MTYRG DCVVWYEE + FP++ G+  IV SW L PVLSG +A  LF  VR  VLRS  +  RS+ +FP LV  TI
Sbjct:   88 ADIECFTDNPGILMYGNMCVVYTNGIWLLLASFFELPVSTTHSTIGGIVGMTMTYRGADCVVWYEEADHFPYIKGVFAIVVSWALFPVLSGVVATLLFFVVRALVLRSEHALNRSMIVFPLLVTVTI 214
[Close]
BLAST of mRNA_L-elsbetiae_contig9954.18886.1 vs. uniprot
Match: D8LJQ4_ECTSI (High affinity phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ4_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 4.540e-53
Identity = 76/126 (60.32%), Postives = 101/126 (80.16%), Query Frame = 1 
Query:    7 QIECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEETETFPFVDGIAGIVASWVLSPVLSGFIAVALFLFVRTFVLRSPDSAKRSIAIFPFLVIATI 384
            ++ECF DNPG+LMYG MCVVYTTG+WLLLAS+L LPVSTTH+TIG ++GM + Y G  CVVW++E+++FP+V G+A I  SWVLSP+ SG +++ +FL VR FVLRSP++  RS  +FP LV+  I
Sbjct:   28 KVECFLDNPGVLMYGMMCVVYTTGMWLLLASYLALPVSTTHATIGAMIGMTVVYGGAGCVVWFQESDSFPYVKGVAAIAVSWVLSPIFSGIVSLLVFLTVRAFVLRSPNAFGRSFWVFPILVMVAI 153
[Close]
BLAST of mRNA_L-elsbetiae_contig9954.18886.1 vs. uniprot
Match: D8LJQ6_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ6_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 1.930e-51
Identity = 82/125 (65.60%), Postives = 100/125 (80.00%), Query Frame = 1 
Query:   10 IECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEETETFPFVDGIAGIVASWVLSPVLSGFIAVALFLFVRTFVLRSPDSAKRSIAIFPFLVIATI 384
            +ECF DNPGILMYG MCVVYTTG+WLLLAS+LELPVSTTHSTIG I+GMA+ Y G  CVVWY+E++ FP+  G+A I  SWVLSP+ SG  ++ +FL VR FVLRSP++  RS  +FP LV+ TI
Sbjct:   50 VECFLDNPGILMYGMMCVVYTTGMWLLLASYLELPVSTTHSTIGAIIGMAVAYAGSGCVVWYQESDIFPYFKGVAAIAVSWVLSPIFSGVASLLVFLTVRAFVLRSPNAFGRSFWVFPVLVMVTI 174
[Close]
BLAST of mRNA_L-elsbetiae_contig9954.18886.1 vs. uniprot
Match: D8LJP9_ECTSI (High affinity phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJP9_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 1.790e-45
Identity = 70/126 (55.56%), Postives = 92/126 (73.02%), Query Frame = 1 
Query:    7 QIECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEETETFPFVDGIAGIVASWVLSPVLSGFIAVALFLFVRTFVLRSPDSAKRSIAIFPFLVIATI 384
            Q+ CF DNPG+LMYG MCV+YTT +WLLLAS+LELPVS T STI  IVGM + Y G  CVVW+ E+E FP   G+  I+  W+LSP+++G  +  +FL +RTFVLRSP + +RS  +FP LV+  +
Sbjct:    6 QVSCFLDNPGVLMYGMMCVLYTTAMWLLLASYLELPVSATQSTISSIVGMTLAYGGRACVVWHRESEHFPGFQGVGAILLYWLLSPIVAGVASCLVFLALRTFVLRSPHAFRRSFWVFPVLVMIIV 131
[Close]
BLAST of mRNA_L-elsbetiae_contig9954.18886.1 vs. uniprot
Match: A0A6S9IV20_HETAK (Phosphate transporter n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9IV20_HETAK)

HSP 1 Score: 157 bits (397), Expect = 3.170e-43
Identity = 70/127 (55.12%), Postives = 97/127 (76.38%), Query Frame = 1 
Query:    4 SQIECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEETETFPFVDGIAGIVASWVLSPVLSGFIAVALFLFVRTFVLRSPDSAKRSIAIFPFLVIATI 384
            + I+CF D+  +LMYG  CV++ TG+WLLLA+FL++PVSTTHS +GGI+GM +  +G  CVVW+ +T+TFP+V G++ IV SW LSP+ SG  A ALFLF RTF+LRS +S  R+I  +P L+ +TI
Sbjct:   86 ADIDCFMDDGPVLMYGMCCVIFCTGLWLLLATFLKMPVSTTHSVVGGIIGMTIAAKGGSCVVWHADTDTFPYVKGVSAIVVSWFLSPIFSGVGAAALFLFCRTFILRSENSYNRAIYFYPLLLGSTI 212
[Close]
BLAST of mRNA_L-elsbetiae_contig9954.18886.1 vs. uniprot
Match: A0A7S0QA31_9EUKA (Phosphate transporter n=3 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QA31_9EUKA)

HSP 1 Score: 156 bits (395), Expect = 6.190e-43
Identity = 71/127 (55.91%), Postives = 94/127 (74.02%), Query Frame = 1 
Query:    4 SQIECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEETETFPFVDGIAGIVASWVLSPVLSGFIAVALFLFVRTFVLRSPDSAKRSIAIFPFLVIATI 384
            + I+CF D P +LMYG +CV+++ G WLLLAS+LE+PVSTTHS +GG++GMAM   GP CV+W E T+ FP+V G++ IV SW LSP+LS   A+ LFL VRT VLR+ DS  R+  ++P LV  TI
Sbjct:   77 ADIDCFVDEPAVLMYGCLCVIFSVGGWLLLASYLEMPVSTTHSCVGGMIGMAMVAHGPACVIWAEPTDQFPYVKGVSAIVISWFLSPLLSAISAMGLFLLVRTTVLRAKDSYDRAFKVYPLLVGVTI 203
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9954.18886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNL8_9PHAE5.370e-6781.89Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7G0K9_ECTSI7.940e-6783.87Phosphate transporter n=2 Tax=Ectocarpus siliculos... [more]
A0A6H5JNE7_9PHAE1.700e-6579.53Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7FWT9_ECTSI2.090e-5873.81Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
D7FZJ7_ECTSI4.200e-5570.08Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
D8LJQ4_ECTSI4.540e-5360.32High affinity phosphate transporter n=1 Tax=Ectoca... [more]
D8LJQ6_ECTSI1.930e-5165.60Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
D8LJP9_ECTSI1.790e-4555.56High affinity phosphate transporter n=1 Tax=Ectoca... [more]
A0A6S9IV20_HETAK3.170e-4355.12Phosphate transporter n=3 Tax=Heterosigma akashiwo... [more]
A0A7S0QA31_9EUKA6.190e-4355.91Phosphate transporter n=3 Tax=Coccolithus braarudi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9954contigL-elsbetiae_contig9954:5184..5943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score219.9
Seed ortholog evalue6.7e-55
Seed eggNOG ortholog2880.D7G0K9
Preferred namePHO89
KEGG koko:K01280,ko:K03306,ko:K14640
KEGG TC2.A.20,2.A.20.2
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005315,GO:0005436,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006817,GO:0006820,GO:0008150,GO:0008324,GO:0012505,GO:0015075,GO:0015077,GO:0015081,GO:0015291,GO:0015293,GO:0015294,GO:0015318,GO:0015319,GO:0015370,GO:0015672,GO:0015698,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0031226,GO:0034220,GO:0035435,GO:0035725,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098655,GO:0098656,GO:0098660,GO:0098661,GO:0098662
EggNOG free text desc.inorganic phosphate transmembrane transporter activity
EggNOG OGsCOG0306@1,KOG2493@2759
EC3.4.14.10
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko02000,ko03110
Exons2
Model size384
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817054.4861922-CDS-L-elsbetiae_contig9954:5183..53421622817054.4861922-CDS-L-elsbetiae_contig9954:5183..5342Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9954 5184..5342 -
1691684012.726302-CDS-L-elsbetiae_contig9954:5183..53421691684012.726302-CDS-L-elsbetiae_contig9954:5183..5342Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9954 5184..5342 -
1622817054.4987164-CDS-L-elsbetiae_contig9954:5718..59431622817054.4987164-CDS-L-elsbetiae_contig9954:5718..5943Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9954 5719..5943 -
1691684012.7408903-CDS-L-elsbetiae_contig9954:5718..59431691684012.7408903-CDS-L-elsbetiae_contig9954:5718..5943Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9954 5719..5943 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9954.18886.1prot_L-elsbetiae_contig9954.18886.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9954 5184..5943 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9954.18886.1

>prot_L-elsbetiae_contig9954.18886.1 ID=prot_L-elsbetiae_contig9954.18886.1|Name=mRNA_L-elsbetiae_contig9954.18886.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
FSQIECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIV
GMAMTYRGPDCVVWYEETETFPFVDGIAGIVASWVLSPVLSGFIAVALFL
FVRTFVLRSPDSAKRSIAIFPFLVIATI
back to top

mRNA from alignment at L-elsbetiae_contig9954:5184..5943-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9954.18886.1 ID=mRNA_L-elsbetiae_contig9954.18886.1|Name=mRNA_L-elsbetiae_contig9954.18886.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=760bp|location=Sequence derived from alignment at L-elsbetiae_contig9954:5184..5943- (Laminarionema elsbetiae ELsaHSoW15)
TTTTCCCAGATCGAGTGCTTCGAAGACAACCCGGGCATCCTGATGTACGG
CAACATGTGCGTCGTGTACACCACCGGAATCTGGCTCCTGCTGGCCTCAT
TCCTCGAGCTGCCCGTATCCACCACCCACTCGACCATCGGAGGCATCGTC
GGGATGGCCATGACCTACCGTGGCCCCGACTGCGTCGTGTGGTACGAGGA
GACCGAGACTTTCCCCTTTGTGGACGTGAGTATGTACATCGGCGCGTATT
TTCTAATAATTTTTTTCCTTACTTGCCATTATTGGCAAGCATTATTGGCA
AACGAATGTATTCGCCGTCTGCCCCACTGGCCCCCGTACTCCACAACCAC
TTATTTCGCTAGACGACCCAACCGGGGTCACAACGATGTTCCTGAGGGAC
CGTCGGTGTTGCCCTTAAACCGGACCTTGATGATCTGGTCGTCGTCGTTG
CATACCGTAGACGTGGCCAAAAATGCTCGCGTTGTTTATCACACCGTACC
GTGGACCACCGCCCACAAATTAATCCGTTGTACACACGATTAACTCACGA
CCCCCCCGTGGACCACCGAACGGCATCGATCGATCCGAATTGCAATCACA
GGGTATTGCCGGCATCGTGGCCTCGTGGGTGCTCTCCCCCGTCCTGTCGG
GGTTCATCGCCGTCGCCCTGTTCCTGTTCGTGAGGACCTTCGTGCTGCGG
TCACCCGACTCCGCTAAGAGATCCATCGCCATCTTCCCCTTCCTGGTGAT
CGCTACCATC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig9954:5184..5943-

>mRNA_L-elsbetiae_contig9954.18886.1 ID=mRNA_L-elsbetiae_contig9954.18886.1|Name=mRNA_L-elsbetiae_contig9954.18886.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig9954:5184..5943- (Laminarionema elsbetiae ELsaHSoW15)
TTTTCCCAGATCGAGTGCTTCGAAGACAACCCGGGCATCCTGATGTACGG
CAACATGTGCGTCGTGTACACCACCGGAATCTGGCTCCTGCTGGCCTCAT
TCCTCGAGCTGCCCGTATCCACCACCCACTCGACCATCGGAGGCATCGTC
GGGATGGCCATGACCTACCGTGGCCCCGACTGCGTCGTGTGGTACGAGGA
GACCGAGACTTTCCCCTTTGTGGACTTTTCCCAGATCGAGTGCTTCGAAG
ACAACCCGGGCATCCTGATGTACGGCAACATGTGCGTCGTGTACACCACC
GGAATCTGGCTCCTGCTGGCCTCATTCCTCGAGCTGCCCGTATCCACCAC
CCACTCGACCATCGGAGGCATCGTCGGGATGGCCATGACCTACCGTGGCC
CCGACTGCGTCGTGTGGTACGAGGAGACCGAGACTTTCCCCTTTGTGGAC
GGTATTGCCGGCATCGTGGCCTCGTGGGTGCTCTCCCCCGTCCTGTCGGG
GTTCATCGCCGTCGCCCTGTTCCTGTTCGTGAGGACCTTCGTGCTGCGGT
CACCCGACTCCGCTAAGAGATCCATCGCCATCTTCCCCTTCCTGGTGATC
GCTACCATCGGTATTGCCGGCATCGTGGCCTCGTGGGTGCTCTCCCCCGT
CCTGTCGGGGTTCATCGCCGTCGCCCTGTTCCTGTTCGTGAGGACCTTCG
TGCTGCGGTCACCCGACTCCGCTAAGAGATCCATCGCCATCTTCCCCTTC
CTGGTGATCGCTACCATC
back to top