mRNA_L-elsbetiae_contig9953.18884.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9953.18884.1
Unique NamemRNA_L-elsbetiae_contig9953.18884.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig9953.18884.1 vs. uniprot
Match: D8LF38_ECTSI (Divalent metal transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF38_ECTSI)

HSP 1 Score: 447 bits (1151), Expect = 3.900e-152
Identity = 229/279 (82.08%), Postives = 256/279 (91.76%), Query Frame = 1
Query:    1 KAVKYYTLDSGIALMVAFLINLAVVSTFAQQFYDEACATADTPSACFVGDSIDPSQPNFGACDADGTGLCQEIGLSAAAAALRGTLGASAKYIWAIGLLAAGQSSTMTGTYAGQFVMEGFLQLKIPKWQRVLLTRIIALGPALAVTIFMGGDIRATDRMSAWLNVMQSLQLPFAIIPLLTFCNSPHIMGEFTISSSMSAFVWLVSIGIIAINLFIVGGFLVDAGNSSEGASG-WLYAGVGVGASLYLGFILFLLREDLRKLKERALSLLMMLGGHDFVV 834
            +A KYYT+DSGIALMVAF+INLAVV TFA+QFYDE CATA  PSACFVGDSIDP+QP++G+CDADGTGLCQEIGLSAAAAALRGTLG+SAKY+WA+GLLAAGQSSTMTGTYAGQFVMEGFLQLKIPKWQRVL+TRIIALGPALAVT+FMGGDIRATDR+SAWLNV+QSLQLPFAIIPLLTFCNSPH+MGEFTI+SSM+AFVW+VSIGII IN+ IV GFL D G SSEGA+  WLYA   +GASLYLGFILFL+REDL+KL+ RA SL   LG HD ++
Sbjct:  308 EATKYYTIDSGIALMVAFMINLAVVCTFAKQFYDETCATASEPSACFVGDSIDPTQPSYGSCDADGTGLCQEIGLSAAAAALRGTLGSSAKYVWAVGLLAAGQSSTMTGTYAGQFVMEGFLQLKIPKWQRVLVTRIIALGPALAVTVFMGGDIRATDRLSAWLNVLQSLQLPFAIIPLLTFCNSPHVMGEFTITSSMTAFVWMVSIGIIGINISIVLGFLFDEGISSEGAAAPWLYACTAIGASLYLGFILFLMREDLQKLRRRAESLFWELGRHDHML 586          
BLAST of mRNA_L-elsbetiae_contig9953.18884.1 vs. uniprot
Match: A0A835YZC9_9STRA (Divalent metal transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZC9_9STRA)

HSP 1 Score: 281 bits (720), Expect = 1.880e-87
Identity = 154/260 (59.23%), Postives = 187/260 (71.92%), Query Frame = 1
Query:    1 KAVKYYTLDSGIALMVAFLINLAVVSTFAQQFYDEACATADTPSACFVGDSIDPSQPNFGACDADGTGLCQEIGLSAAAAALRGTLGASAKYIWAIGLLAAGQSSTMTGTYAGQFVMEGFLQLKIPKWQRVLLTRIIALGPALAVTIFMGGDIRATDRMSAWLNVMQSLQLPFAIIPLLTFCNSPHIMGEFTISSSMSAFVWLVSIGIIAINLFIVGGFLVDAGNSSEGASGWLYAGVGVGASLYLGFILFLLREDLRKL 780
            +AVKY T+DS +AL +AFLINLAVV TFA QFY   C     P+AC    SID   P FG C A G G+CQEIGL  A  ALRG+LG++AKY+WAIGLLAAGQSSTMTGTYAGQFVMEGFLQL I +WQRV+LTR IALGPAL VT+ M G   ATDR+S WLNV+QS+QLPFA+IPL+ FC S  +MGEFT+  SM+A +W+++IG+I INL+ V  F  D     E  +      +    +LYL F L+L+ EDL +L
Sbjct:  256 EAVKYCTIDSALALGLAFLINLAVVGTFAVQFYSVDCINTRMPTACLTLGSIDRDSPTFGTC-AKGLGVCQEIGLGHAGDALRGSLGSNAKYVWAIGLLAAGQSSTMTGTYAGQFVMEGFLQLSIAQWQRVMLTRTIALGPALLVTVLMHGKGTATDRLSEWLNVLQSVQLPFALIPLVHFCGSKRLMGEFTVGRSMTALLWVLTIGMIGINLYTVLDFFFDDDAPKESTTISSRIMIFTVGTLYLSFCLYLMWEDLLRL 514          
BLAST of mRNA_L-elsbetiae_contig9953.18884.1 vs. uniprot
Match: A0A7S3YLW2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YLW2_HETAK)

HSP 1 Score: 200 bits (509), Expect = 4.550e-57
Identity = 121/252 (48.02%), Postives = 156/252 (61.90%), Query Frame = 1
Query:    1 KAVKYYTLDSGIALMVAFLINLAVVSTFAQQFYDEACATADTPSACFVG--DSIDPSQPNFGACDADGTGLCQEIGLSAAAAALRGTLGASAKYIWAIGLLAAGQSSTMTGTYAGQFVMEGFLQLKIPKWQRVLLTRIIALGPALAVTIFMGGDIRATDRMSAWLNVMQSLQLPFAIIPLLTFCNSPHIMGEFTISSSMSAFVWLVSIGIIA----INLFIVGGFLVDAGNSSEGASGWLYAGVGVGASLYL 738
            +A+KY  LDS I+L ++F+INLAV+ +FA  FY   CA A T SAC     D I+PSQ      +  G G C E+GLS A   L  TLGA+AK +WA+GLLA+GQSSTMTG YAGQFV EGFL++ IP+W  VL+TR +AL PAL V +    +   +D +  WLN++QS+QLPFA+ PLL F  SP IMG+F +S  M    W    GIIA    +NL+I    L D        +  L A +   A+LYL
Sbjct:  244 QALKYTYLDSAISLFISFVINLAVIGSFAYNFYSPTCARASTMSACVNHPLDGIEPSQLYGDCTNTLGAGQCMEVGLSQAGDVLGRTLGATAKALWAVGLLASGQSSTMTGAYAGQFVFEGFLRIPIPRWLSVLVTRCVALVPALLVAVGSMSNPVLSDVLQQWLNILQSIQLPFALFPLLFFLASPKIMGQFAVSRIM----WWALAGIIATLLGMNLYITQTSLPDTSGLEADLTWGLSAALAALAALYL 491          
BLAST of mRNA_L-elsbetiae_contig9953.18884.1 vs. uniprot
Match: A0A7S3YHG8_9EUKA (Hypothetical protein n=3 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YHG8_9EUKA)

HSP 1 Score: 201 bits (512), Expect = 9.400e-57
Identity = 116/267 (43.45%), Postives = 170/267 (63.67%), Query Frame = 1
Query:    1 KAVKYYTLDSGIALMVAFLINLAVVSTFAQQFYDEACATA-DTPSACFV-------GDSIDPSQ-PNFGACDADGTGLCQEIGLSAAAAALRGTLGASAKYIWAIGLLAAGQSSTMTGTYAGQFVMEGFLQLKIPKWQRVLLTRIIALGPALAVTIFMGGDIRATDRMSAWLNVMQSLQLPFAIIPLLTFCNSPHIMGEFTISSSMSAFVWLVSIGIIAINLFIVGGFLVDAGNSSEGASGWLYAGVGVGASLYLGFILFLLREDLR 774
            +A+KY  ++S IAL+V+F IN A+V TF + F++  C++  D   AC         G+  DP+Q P+  A    G G+C EIGLS+A  AL+  LG +AKYIW  GLLA+GQ+STMTGTYAGQFVM+GFLQ+++  W R ++TR +ALGPA+AV +         D +  WLN++QS+QLPFA++P+L   ++P IMG+FT   ++    W  +IG+ A+N+++V  F  DA N    A  W  A V V   +Y  FI +++ + L+
Sbjct:  329 EAIKYNAIESAIALIVSFFINAAIVVTFQRGFFNRECSSNFDRNYACLDSRAGIPDGNVFDPTQTPSSCASRFGGHGVCAEIGLSSAGDALKQFLGDAAKYIWGFGLLASGQASTMTGTYAGQFVMQGFLQIQVAPWLRTMITRSVALGPAVAVALATAHSPDLGDELGEWLNILQSVQLPFALLPVLMLTSAPAIMGQFTNRLTLKIIGWTAAIGVFAVNVYLVVSFCFDATNPVPDAD-WFRAIVIVFLVIYFIFIAYVVYDGLK 594          
BLAST of mRNA_L-elsbetiae_contig9953.18884.1 vs. uniprot
Match: A0A4D9D1G8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1G8_9STRA)

HSP 1 Score: 199 bits (505), Expect = 1.040e-56
Identity = 119/258 (46.12%), Postives = 160/258 (62.02%), Query Frame = 1
Query:    1 KAVKYYTLDSGIALMVAFLINLAVVSTFAQQFYDEACATADT-PSACFVGDSIDPSQPNFGACDADGTGLCQEIGLSAAAAALRGTLGASAKYIWAIGLLAAGQSSTMTGTYAGQFVMEGFLQLKIPKWQRVLLTRIIALGPALAVTIFMGGDIRATDRMSAWLNVMQSLQLPFAIIPLLTFCNSPHIMGEFTISSSMSAFVWLVSIGIIAINLFIVGGFLVDAGNSSEGASGWLYAGVGVGASLYLGFILFLLREDL 771
            +A KY+ +DS IAL V+F+INLAVVS FA  F+D  CATA   P AC        S+   G CD      CQ IGL+ A  AL   LG SAKYIWA+GLLAAGQ+STMTGTYAGQ+VMEGFL L+IP W RV  TR +A+GP L V I    +   +DR    +NV  S+ L F+++P+L F +S  IMGE   S  ++  +W+++ G++AIN+++V   ++  G    G   W+Y    V   +YL F   L++ED+
Sbjct:  206 EANKYFAIDSAIALTVSFVINLAVVSVFAYHFFDHGCATAPGGPLACL-------SRTEEGVCD------CQLIGLAGAHDALAEALGKSAKYIWAVGLLAAGQASTMTGTYAGQYVMEGFLDLQIPLWARVTFTRFVAIGPGLVVAILTENNQNLSDRFQEAINVFNSVLLSFSLLPVLHFTSSSVIMGEHVSSLPLTITIWVLAFGVLAINIYLV---VLRIG---AGQPWWVYVVTTVVGVIYLAFSYSLVQEDI 444          
BLAST of mRNA_L-elsbetiae_contig9953.18884.1 vs. uniprot
Match: H3GQQ0_PHYRM (Uncharacterized protein n=30 Tax=Phytophthora TaxID=4783 RepID=H3GQQ0_PHYRM)

HSP 1 Score: 197 bits (501), Expect = 1.230e-55
Identity = 122/270 (45.19%), Postives = 166/270 (61.48%), Query Frame = 1
Query:    1 KAVKYYTLDSGIALMVAFLINLAVVSTFAQQFYDEACATA----DTPSACFVGDSIDPSQPNFGACD--ADGTGLCQEIGLSAAAAALRGTLGASAKYIWAIGLLAAGQSSTMTGTYAGQFVMEGFLQLKIPKWQRVLLTRIIALGPALAVTIFMGGDIRATDRMSAWLNVMQSLQLPFAIIPLLTFCNSPHIMGEFTISSSMSAFVWLVSIGIIAINLFIVGGFLVDAGNSSEGASGWLYAGVGVGASLYLGFILFLLREDLRKLKERA 792
            +A KY+ ++SG AL V+FLINLAV++ FA+ F+   C ++       +AC  G   D     +G C   + G G+CQEIGLS A  AL G LG  A  IWA+GLLAAGQSSTMTGTYAGQFVMEGFLQL I  W+RV LTR ++L PA+ V I    +   +D M   LNV+QS+QLPFA++P+L F +SP IMG+F  S +     W++   +  INL+++     +    + GA G +   +G    LY GF+ +L R D+    +RA
Sbjct:  293 EANKYFAIESGFALFVSFLINLAVLAVFAKGFFSPDCTSSYDSTGVNTACVPGAIADGE--TYGHCQLASGGEGMCQEIGLSQAGVALSGMLGQYADIIWAVGLLAAGQSSTMTGTYAGQFVMEGFLQLHISPWKRVALTRCVSLVPAMTVAILSQQNPADSDHMDELLNVLQSIQLPFALLPVLIFTSSPAIMGDFANSKATVVAGWMLGGLVCVINLYLI---FTNLEGLALGAVGLV--ALGGTCCLYFGFLGYLARADMTLSAQRA 555          
BLAST of mRNA_L-elsbetiae_contig9953.18884.1 vs. uniprot
Match: A0A7S2Y3E1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y3E1_9STRA)

HSP 1 Score: 197 bits (502), Expect = 1.280e-55
Identity = 105/223 (47.09%), Postives = 144/223 (64.57%), Query Frame = 1
Query:    1 KAVKYYTLDSGIALMVAFLINLAVVSTFAQQFYDEACATADTPSACFVGDSIDPSQPN------FGACDADGTGLCQEIGLSAAAAALRGTLGASAKYIWAIGLLAAGQSSTMTGTYAGQFVMEGFLQLKIPKWQRVLLTRIIALGPALAVTIFMGGDIRATDRMSAWLNVMQSLQLPFAIIPLLTFCNSPHIMGEFTISSSMS-AFVWLVSIGIIAINLFIV 648
            +A KY ++DSG+A+ V FLIN+ V+ +FA  FYD  CA A+ PSAC    +      +       G CD  G G+CQEIGLS A  ALR +LG +AK +WAIGLLA+GQS+TM G YAGQFVM+GFL +K+P W R L+TR +AL P+L V     G +  +D+M  WLNV+QS+QLPFA++ L+     P IMGE  ++   + AFVW   + ++  N + +
Sbjct:  298 EANKYLSIDSGMAVFVTFLINITVIGSFAYNFYDPECAHAEVPSACVSNTAFHNEDASAQGIQVLGVCDG-GQGVCQEIGLSMAGEALRESLGGNAKTLWAIGLLASGQSATMAGAYAGQFVMQGFLDMKVPTWSRALITRSVALLPSLVVAFLCEGQMMVSDQMQEWLNVLQSVQLPFALLALIYIVGDPKIMGEEHVAGPKTLAFVWTCLVLLMVANFYTI 519          
BLAST of mRNA_L-elsbetiae_contig9953.18884.1 vs. uniprot
Match: A0A662XLP3_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XLP3_9STRA)

HSP 1 Score: 196 bits (498), Expect = 1.860e-55
Identity = 124/273 (45.42%), Postives = 166/273 (60.81%), Query Frame = 1
Query:    1 KAVKYYTLDSGIALMVAFLINLAVVSTFAQQFYDEACA----TADTPSACFVGDSIDPSQPNFGACDA--DGTGLCQEIGLSAAAAALRGTLGASAKYIWAIGLLAAGQSSTMTGTYAGQFVMEGFLQLKIPKWQRVLLTRIIALGPALAVTIFMGGDIRATDRMSAWLNVMQSLQLPFAIIPLLTFCNSPHIMGEFTISSSMSAFVWLVSIGIIAINLFIVGGFLVDAGNSSEGASGWLYAGVGVGASLYLGFILFLLREDLRKLKERALSL 801
            +A KY+ ++SG AL V+FLINLAV++ FA+ F+   C     TA   +AC  G +I   +  +G C     G G+CQ IGLS A  AL G LG  A  IWA+GLLAAGQSSTMTGTYAGQFVMEGFL L +  W+RV LTR ++L PA+ V I    +   +DRM   LNV+QS+QLPFA++P+L F +SP IMG+F  S +     WL+   +  INL+++   L      + G    L A +G G  +Y GF+ +L R D+    +R   L
Sbjct:  261 EANKYFAIESGGALFVSFLINLAVLAVFAKGFFSTDCTSSYDTAGINTACVPG-AITQGE-TYGHCTLANGGDGMCQGIGLSQAGVALSGMLGQYADIIWAVGLLAAGQSSTMTGTYAGQFVMEGFLHLHLSPWKRVALTRCVSLVPAMTVAILSQQNPADSDRMDELLNVLQSIQLPFALLPVLIFTSSPAIMGDFANSKTAVVTGWLLGAVVCVINLYLISANLEGMALGTIG----LVALIGTGC-IYFGFLAYLTRADMTLSAQRVRKL 526          
BLAST of mRNA_L-elsbetiae_contig9953.18884.1 vs. uniprot
Match: W7TP25_9STRA (2-isopropylmalate synthase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TP25_9STRA)

HSP 1 Score: 199 bits (507), Expect = 1.980e-54
Identity = 119/258 (46.12%), Postives = 160/258 (62.02%), Query Frame = 1
Query:    1 KAVKYYTLDSGIALMVAFLINLAVVSTFAQQFYDEACATADT-PSACFVGDSIDPSQPNFGACDADGTGLCQEIGLSAAAAALRGTLGASAKYIWAIGLLAAGQSSTMTGTYAGQFVMEGFLQLKIPKWQRVLLTRIIALGPALAVTIFMGGDIRATDRMSAWLNVMQSLQLPFAIIPLLTFCNSPHIMGEFTISSSMSAFVWLVSIGIIAINLFIVGGFLVDAGNSSEGASGWLYAGVGVGASLYLGFILFLLREDL 771
            +A KY+ +DS IAL V+F+INLAVVS FA  F+D  CATA   P AC        S+   G CD      CQ IGL+ A  AL   LG SAKYIWA+GLLAAGQ+STMTGTYAGQ+VMEGFL L+IP W RV  TR +A+GP L V I    +   +DR    +NV  S+ L F+++P+L F +S  IMGE   S  ++  +W+++ G++AIN+++V   ++  G    G   W+Y    V   +YL F   L++ED+
Sbjct: 1113 EANKYFAIDSAIALTVSFVINLAVVSVFAYHFFDHGCATAPGGPLACL-------SRTEEGVCD------CQLIGLAGAHDALAEALGKSAKYIWAVGLLAAGQASTMTGTYAGQYVMEGFLDLQIPLWARVTFTRFVAIGPGLVVAILTENNQNLSDRFQEAINVFNSVLLSFSLLPVLHFTSSSVIMGEHVSSLPLTITIWVLAFGVLAINIYLV---VLRIG---AGQPWWVYVVTAVVGLIYLAFSYSLVQEDI 1351          
BLAST of mRNA_L-elsbetiae_contig9953.18884.1 vs. uniprot
Match: F0W551_9STRA (Metal Ion (Mn2 iron) Transporter (Nramp) Family put n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W551_9STRA)

HSP 1 Score: 192 bits (487), Expect = 3.250e-54
Identity = 118/263 (44.87%), Postives = 170/263 (64.64%), Query Frame = 1
Query:   13 YYTLDSGIALMVAFLINLAVVSTFAQQFYDEACATA----DTPSACFVGDSIDPSQPNFGACDADG--TGLCQEIGLSAAAAALRGTLGASAKYIWAIGLLAAGQSSTMTGTYAGQFVMEGFLQLKIPKWQRVLLTRIIALGPALAVTIFMGGDIRATDRMSAWLNVMQSLQLPFAIIPLLTFCNSPHIMGE-FTISSSMSAFVWLVSIGIIAINLFIVGGFLVDAGNSSEGASGWLYAGVGVGASLYLGFILFLLREDLRKL 780
            Y+T+++G+AL V+FLINLAV+  F+Q F+   C          S+C  G ++D   P F +C      +G CQ IGLS A  +L+G LG  A+ IWAIGLLAAGQSSTMTGTYAGQFVMEGFL +++   +RV LTR +AL PA+ V I      +++D+M   LNV+QS+QLPFA++PLL F +S +IMGE F  ++++    W++ + I  INL++V   L++   +S    G+  +G+ V   +Y  F+ FL+R D+R L
Sbjct:  226 YFTIEAGVALFVSFLINLAVLGVFSQGFFSPDCLETYKKDRISSSCIPGRTVDG--PVFRSCTLSNGISGWCQPIGLSQAGRSLKGMLGDYAEIIWAIGLLAAGQSSTMTGTYAGQFVMEGFLNIRLSPCKRVALTRCVALIPAMVVAILSQYQPQSSDKMDELLNVLQSIQLPFALLPLLVFTSSRNIMGEIFVNNTAIMGIGWIIGLLICVINLYLV---LLNL--TSLHLDGFTLSGLVVLGCMYFYFLAFLIRSDMRSL 481          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9953.18884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF38_ECTSI3.900e-15282.08Divalent metal transporter n=2 Tax=Ectocarpus TaxI... [more]
A0A835YZC9_9STRA1.880e-8759.23Divalent metal transporter n=1 Tax=Tribonema minus... [more]
A0A7S3YLW2_HETAK4.550e-5748.02Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3YHG8_9EUKA9.400e-5743.45Hypothetical protein n=3 Tax=Lotharella globosa Ta... [more]
A0A4D9D1G8_9STRA1.040e-5646.12Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
H3GQQ0_PHYRM1.230e-5545.19Uncharacterized protein n=30 Tax=Phytophthora TaxI... [more]
A0A7S2Y3E1_9STRA1.280e-5547.09Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A662XLP3_9STRA1.860e-5545.42Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
W7TP25_9STRA1.980e-5446.122-isopropylmalate synthase n=1 Tax=Nannochloropsis... [more]
F0W551_9STRA3.250e-5444.87Metal Ion (Mn2 iron) Transporter (Nramp) Family pu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9953contigL-elsbetiae_contig9953:119..2500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score447.2
Seed ortholog evalue5.6e-123
Seed eggNOG ortholog2880.D8LF38
KEGG rclassRC00005,RC00017,RC00049,RC02748
KEGG koko:K16055,ko:K21398
KEGG TC2.A.55.2.1,2.A.55.2.2
KEGG ReactionR02737,R02778
KEGG Pathwayko00500,ko01100,ko04142,ko04216,ko04978,map00500,map01100,map04142,map04216,map04978
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.transition metal ion homeostasis
EggNOG OGsCOG1914@1,KOG1291@2759
EC2.4.1.15,3.1.3.12
COG Functional cat.P
CAZyGT20
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003,ko02000
Ec32 ortholog descriptiondivalent metal transporter
Ec32 orthologEc-06_001530.1
Exons3
Model size834
Cds size834
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9953.18884.1prot_L-elsbetiae_contig9953.18884.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9953 119..2500 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817054.3857114-CDS-L-elsbetiae_contig9953:118..4151622817054.3857114-CDS-L-elsbetiae_contig9953:118..415Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9953 119..415 +
1691684012.657925-CDS-L-elsbetiae_contig9953:118..4151691684012.657925-CDS-L-elsbetiae_contig9953:118..415Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9953 119..415 +
1622817054.3990638-CDS-L-elsbetiae_contig9953:852..11061622817054.3990638-CDS-L-elsbetiae_contig9953:852..1106Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9953 853..1106 +
1691684012.674327-CDS-L-elsbetiae_contig9953:852..11061691684012.674327-CDS-L-elsbetiae_contig9953:852..1106Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9953 853..1106 +
1622817054.4141593-CDS-L-elsbetiae_contig9953:2217..25001622817054.4141593-CDS-L-elsbetiae_contig9953:2217..2500Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9953 2218..2500 +
1691684012.6863585-CDS-L-elsbetiae_contig9953:2217..25001691684012.6863585-CDS-L-elsbetiae_contig9953:2217..2500Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9953 2218..2500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9953.18884.1

>prot_L-elsbetiae_contig9953.18884.1 ID=prot_L-elsbetiae_contig9953.18884.1|Name=mRNA_L-elsbetiae_contig9953.18884.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=278bp
KAVKYYTLDSGIALMVAFLINLAVVSTFAQQFYDEACATADTPSACFVGD
SIDPSQPNFGACDADGTGLCQEIGLSAAAAALRGTLGASAKYIWAIGLLA
AGQSSTMTGTYAGQFVMEGFLQLKIPKWQRVLLTRIIALGPALAVTIFMG
GDIRATDRMSAWLNVMQSLQLPFAIIPLLTFCNSPHIMGEFTISSSMSAF
VWLVSIGIIAINLFIVGGFLVDAGNSSEGASGWLYAGVGVGASLYLGFIL
FLLREDLRKLKERALSLLMMLGGHDFVV
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mRNA from alignment at L-elsbetiae_contig9953:119..2500+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9953.18884.1 ID=mRNA_L-elsbetiae_contig9953.18884.1|Name=mRNA_L-elsbetiae_contig9953.18884.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2382bp|location=Sequence derived from alignment at L-elsbetiae_contig9953:119..2500+ (Laminarionema elsbetiae ELsaHSoW15)
AAGGCGGTCAAGTACTACACCCTTGACAGCGGCATCGCGCTGATGGTGGC GTTCCTCATCAACCTCGCCGTGGTGAGCACGTTCGCCCAGCAGTTCTACG ACGAGGCGTGCGCCACGGCGGACACGCCGTCGGCCTGCTTCGTGGGCGAC TCGATCGACCCCTCGCAGCCCAACTTCGGCGCCTGTGACGCCGACGGCAC GGGGCTGTGCCAGGAGATCGGGCTCTCGGCGGCGGCCGCCGCGCTCCGGG GTACGCTGGGGGCGTCCGCGAAGTACATCTGGGCCATTGGCTTACTGGTA TGTATGTAAATACATTGAAAGTCACACCATTTGGATGCTCTTGGGTTTTT CTTTCCTGTCGGCGGCGGCGGCGGTGGCGGCGGCGTCGTTGTCGTACAAG TAGGTACGGTAGTAGTGAGTGGTATATTGCAGGATACCAAAAGAGTAGCT AGCGGGGGGGGGCGGGGGGCGGGGGGGCACGGACGTCTACGTTTTGCCCA GTTGGCTTCACACGCACACGCGGACAACCCCAAACACAGTAGTAGTCACG GCGGTGCTGTGCACGTATTTAGTGTCTCCTTTTTTTTTGTGTGAGGTGAG CCCGTGTTTCCCCGGGCCTCTGACCAAGGCACCCACCCCTTCCGATGGCA AACACACACACACACACACACACACATAAACTTTATCCCACTTTTATCCC GCGTCTCTCGGCTTTGCTCGCGGTGCCCGCGCAGGCGGCGGGCCAGAGCA GCACCATGACGGGGACGTACGCGGGGCAATTCGTGATGGAGGGGTTCTTG CAGCTCAAGATACCCAAGTGGCAGAGGGTCCTCCTCACCCGCATCATCGC CCTGGGCCCCGCCCTCGCGGTGACGATCTTCATGGGCGGGGACATCAGGG CGACGGACCGCATGAGCGCGTGGCTGAACGTGATGCAGAGCTTGCAGCTG CCGTTCGCGATCATCCCCCTCCTGACGTTCTGCAACAGGTATTTTTTTTT TTTTTTTTTGTTTCCCCCTGGTCGCGCGGTTGTGACCCTCCCCCTCGCCC CCCACCTCCCCCTCCCCTCCCACCCCACNNNNNNNNNNTTTTTTTGTCTG CCCATTATTGGATTTTGTCGTCTGCCCCCCTGGCCCCCATCCTCCACTTC TACTCTAGCTAGACGACTCAACCGGGGTCACATAGGAGGGGGAGGTTGGA CCCCCTCCTTTCGCGACCATCCCCCTCCTGACGTTCTGCAACAGGTATGT GTACATGTGTGATTGGTTGATGGGTGGTGGCGCGGTTGTTAACATTTTTT TTTCGGTTTGTTGGACGCTTTTGCTTGGTCGCAACAACCCGCCAGCTTTC TTTTCCCGAGTTGCGGAGCGAGCGGGGTTTTAGCTGCCGTCCTGGATTTC CGGGCCATGAGAATGGGGAGACATCGCGGAGAGGAAAAAATAGCGTTTCA AAAGATTTTGGTAAATATATACCAAACAACAAATTAATGATATATTGCCT GCCCAAAACCAAATAATTAATTAATTAATTAATTAAAAAAAAACTATTAT ATATAAAGTGTGTTATTTTTTTATTAATGTATATATATGGTGTGTTCAAT ATTGTTTAATTATTATCGATTATTTGGTTTGGGCAGGGAATAAATGATAT ATATATGGTGTGTTGGATTTTATTTAATTATTATTAATTATTTGGTTTGG GGCAGGGAATATGCACAAAAAAACAAAAAACAAAAAACAAAAAGGGCGTC CTGTCGGGAAAGGTGGCGACGTTCGCAGGGCGGAGAGGATGTGCGCCACT TCCTAGTTTGTCGTATCCTGGAGCTGACTGACCAGGCAACAGCTAAGTTG CCTCAGGGGACCACGCGTAACTCTACTCGAGTTTCCGACTTGGCCGGTTG TTCGCACCTTAGTGTTGGCAGACTTTTGACAGGCGGTACGTATGTATGAA GCAAGAGTCTCTCCCCCCCCCCCCCCCCTTTCCTAACCCCGGCGGCTGTG TGCGCTCGCGCTCTCTGTGTGTTTGTGTGTGTGCGTGTCTCTCTCTCTCT CTCTCTTCTCCCTGCGCTGCCGTTTCTTCCTTATCTCCTCCCGAAAAAGC CCGCACATCATGGGCGAGTTCACCATCTCGAGCTCCATGTCGGCGTTCGT GTGGCTGGTGTCGATTGGCATCATCGCCATCAACCTCTTCATCGTGGGGG GCTTCCTGGTGGACGCGGGCAACTCCTCCGAGGGCGCGAGCGGCTGGCTG TACGCCGGGGTTGGCGTGGGGGCGTCCCTCTACCTGGGCTTCATCCTGTT CCTCCTGCGGGAGGACCTCCGGAAGCTCAAGGAGCGGGCGCTATCCTTGC TCATGATGCTCGGGGGCCACGATTTCGTCGTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9953:119..2500+

>mRNA_L-elsbetiae_contig9953.18884.1 ID=mRNA_L-elsbetiae_contig9953.18884.1|Name=mRNA_L-elsbetiae_contig9953.18884.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1668bp|location=Sequence derived from alignment at L-elsbetiae_contig9953:119..2500+ (Laminarionema elsbetiae ELsaHSoW15)
AAGGCGGTCAAGTACTACACCCTTGACAGCGGCATCGCGCTGATGGTGGC
GTTCCTCATCAACCTCGCCGTGGTGAGCACGTTCGCCCAGCAGTTCTACG
ACGAGGCGTGCGCCACGGCGGACACGCCGTCGGCCTGCTTCGTGGGCGAC
TCGATCGACCCCTCGCAGCCCAACTTCGGCGCCTGTGACGCCGACGGCAC
GGGGCTGTGCCAGGAGATCGGGCTCTCGGCGGCGGCCGCCGCGCTCCGGG
GTACGCTGGGGGCGTCCGCGAAGTACATCTGGGCCATTGGCTTACTGAAG
GCGGTCAAGTACTACACCCTTGACAGCGGCATCGCGCTGATGGTGGCGTT
CCTCATCAACCTCGCCGTGGTGAGCACGTTCGCCCAGCAGTTCTACGACG
AGGCGTGCGCCACGGCGGACACGCCGTCGGCCTGCTTCGTGGGCGACTCG
ATCGACCCCTCGCAGCCCAACTTCGGCGCCTGTGACGCCGACGGCACGGG
GCTGTGCCAGGAGATCGGGCTCTCGGCGGCGGCCGCCGCGCTCCGGGGTA
CGCTGGGGGCGTCCGCGAAGTACATCTGGGCCATTGGCTTACTGGCGGCG
GGCCAGAGCAGCACCATGACGGGGACGTACGCGGGGCAATTCGTGATGGA
GGGGTTCTTGCAGCTCAAGATACCCAAGTGGCAGAGGGTCCTCCTCACCC
GCATCATCGCCCTGGGCCCCGCCCTCGCGGTGACGATCTTCATGGGCGGG
GACATCAGGGCGACGGACCGCATGAGCGCGTGGCTGAACGTGATGCAGAG
CTTGCAGCTGCCGTTCGCGATCATCCCCCTCCTGACGTTCTGCAACAGGC
GGCGGGCCAGAGCAGCACCATGACGGGGACGTACGCGGGGCAATTCGTGA
TGGAGGGGTTCTTGCAGCTCAAGATACCCAAGTGGCAGAGGGTCCTCCTC
ACCCGCATCATCGCCCTGGGCCCCGCCCTCGCGGTGACGATCTTCATGGG
CGGGGACATCAGGGCGACGGACCGCATGAGCGCGTGGCTGAACGTGATGC
AGAGCTTGCAGCTGCCGTTCGCGATCATCCCCCTCCTGACGTTCTGCAAC
AGCCCGCACATCATGGGCGAGTTCACCATCTCGAGCTCCATGTCGGCGTT
CGTGTGGCTGGTGTCGATTGGCATCATCGCCATCAACCTCTTCATCGTGG
GGGGCTTCCTGGTGGACGCGGGCAACTCCTCCGAGGGCGCGAGCGGCTGG
CTGTACGCCGGGGTTGGCGTGGGGGCGTCCCTCTACCTGGGCTTCATCCT
GTTCCTCCTGCGGGAGGACCTCCGGAAGCTCAAGGAGCGGGCGCTATCCT
TGCTCATGATGCTCGGGGGCCACGATTTCGTCGTCCCCGCACATCATGGG
CGAGTTCACCATCTCGAGCTCCATGTCGGCGTTCGTGTGGCTGGTGTCGA
TTGGCATCATCGCCATCAACCTCTTCATCGTGGGGGGCTTCCTGGTGGAC
GCGGGCAACTCCTCCGAGGGCGCGAGCGGCTGGCTGTACGCCGGGGTTGG
CGTGGGGGCGTCCCTCTACCTGGGCTTCATCCTGTTCCTCCTGCGGGAGG
ACCTCCGGAAGCTCAAGGAGCGGGCGCTATCCTTGCTCATGATGCTCGGG
GGCCACGATTTCGTCGTC
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