mRNA_L-elsbetiae_contig9951.18882.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9951.18882.1
Unique NamemRNA_L-elsbetiae_contig9951.18882.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9951.18882.1 vs. uniprot
Match: D7FLW1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLW1_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 1.600e-7
Identity = 29/59 (49.15%), Postives = 37/59 (62.71%), Query Frame = 3 
Query:   66 TAATLPSCVLAK---RMPSKCRHVGCSKRPNYGAAGTKRAEFCSGHKKEGMVNVRDKMC 233
            TA  L + V+A+   R    C  +GCS RP+YG   +K+AEFCS H K+GMVNV  K C
Sbjct:  228 TATKLSTPVIARHRGRGQPSCEEIGCSMRPSYGKDNSKKAEFCSQHAKQGMVNVVHKRC 286
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BLAST of mRNA_L-elsbetiae_contig9951.18882.1 vs. uniprot
Match: A0A6H5KW71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW71_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 4.000e-7
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 3 
Query:  105 MPSKCRHVGCSKRPNYGAAGTKRAEFCSGHKKEGMVNV 218
            MP+ C H GC K+P YG AGTK+ EFCSGH+K GMV+V
Sbjct:    1 MPA-CGHAGCPKQPKYGVAGTKKREFCSGHRKAGMVDV 37
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BLAST of mRNA_L-elsbetiae_contig9951.18882.1 vs. uniprot
Match: A0A6H5JGG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG2_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 9.920e-7
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 3 
Query:   81 PSCVLAKRMPSKCRHVGCSKRPNYGAAGTKRAEFCSGHKKEGMVNVRDKMC 233
            P+ +  +R    C+  GC+ RP+YG AG K+AEFCS HKK GM+N+  K C
Sbjct:   15 PTRLHGQRQRLCCQEDGCTTRPSYGNAGCKKAEFCSQHKKPGMMNLVSKRC 65
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BLAST of mRNA_L-elsbetiae_contig9951.18882.1 vs. uniprot
Match: A0A6H5JZ54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ54_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 1.750e-5
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 3 
Query:   69 AATLPSCVLAKRMPSK-CRHVGCSKRPNYGAAGTKRAEFCSGHKKEGMVNVRDK 227
            AA+  S    +R   + CR  GC+ RP+YG A +K+AEFCS H++ GM++VR K
Sbjct:   12 AASSRSTARCQRQGQRSCREHGCTTRPSYGRAHSKKAEFCSQHRERGMIDVRSK 65
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BLAST of mRNA_L-elsbetiae_contig9951.18882.1 vs. uniprot
Match: A0A6H5KZY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZY0_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 4.470e-5
Identity = 22/44 (50.00%), Postives = 29/44 (65.91%), Query Frame = 3 
Query:  102 RMPSKCRHVGCSKRPNYGAAGTKRAEFCSGHKKEGMVNVRDKMC 233
            + P  C+  GC++RP+YG A +K AEFCS H K  M+NV  K C
Sbjct:  112 KRPLFCQEDGCTRRPSYGNASSKTAEFCSKHSKPAMINVVGKRC 155
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BLAST of mRNA_L-elsbetiae_contig9951.18882.1 vs. uniprot
Match: A0A6H5JW94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW94_9PHAE)

HSP 1 Score: 48.1 bits (113), Expect = 5.910e-5
Identity = 20/35 (57.14%), Postives = 27/35 (77.14%), Query Frame = 3 
Query:  114 KCRHVGCSKRPNYGAAGTKRAEFCSGHKKEGMVNV 218
            +C H GC+K+P++G AG+KRAEFC  H K+ MV V
Sbjct:    8 RCGHPGCTKKPSFGTAGSKRAEFCCPHAKQDMVIV 42
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BLAST of mRNA_L-elsbetiae_contig9951.18882.1 vs. uniprot
Match: D7FH63_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH63_ECTSI)

HSP 1 Score: 49.7 bits (117), Expect = 6.720e-5
Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 3 
Query:  117 CRHVGCSKRPNYGAAGTKRAEFCSGHKKEGMVNVRDK 227
            C+H GC+KRP+YG A  K+AEFCS H + GMV+V +K
Sbjct:   67 CQHNGCTKRPSYGEAHGKKAEFCSQHMQPGMVDVVNK 103
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9951.18882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FLW1_ECTSI1.600e-749.15EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5KW71_9PHAE4.000e-765.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGG2_9PHAE9.920e-749.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZ54_9PHAE1.750e-546.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZY0_9PHAE4.470e-550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW94_9PHAE5.910e-557.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH63_ECTSI6.720e-559.46EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9951contigL-elsbetiae_contig9951:6905..7191 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size287
Cds size183
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817054.1570728-UTR-L-elsbetiae_contig9951:6904..70081622817054.1570728-UTR-L-elsbetiae_contig9951:6904..7008Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9951 6905..7008 +
1691684012.4829438-UTR-L-elsbetiae_contig9951:6904..70081691684012.4829438-UTR-L-elsbetiae_contig9951:6904..7008Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9951 6905..7008 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817054.170669-CDS-L-elsbetiae_contig9951:7008..71911622817054.170669-CDS-L-elsbetiae_contig9951:7008..7191Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9951 7009..7191 +
1691684012.498217-CDS-L-elsbetiae_contig9951:7008..71911691684012.498217-CDS-L-elsbetiae_contig9951:7008..7191Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9951 7009..7191 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9951.18882.1prot_L-elsbetiae_contig9951.18882.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9951 7009..7191 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9951.18882.1

>prot_L-elsbetiae_contig9951.18882.1 ID=prot_L-elsbetiae_contig9951.18882.1|Name=mRNA_L-elsbetiae_contig9951.18882.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=61bp
MPSKCRHVGCSKRPNYGAAGTKRAEFCSGHKKEGMVNVRDKMCARHGCTK
QSNYGVAGSKT
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mRNA from alignment at L-elsbetiae_contig9951:6905..7191+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9951.18882.1 ID=mRNA_L-elsbetiae_contig9951.18882.1|Name=mRNA_L-elsbetiae_contig9951.18882.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=287bp|location=Sequence derived from alignment at L-elsbetiae_contig9951:6905..7191+ (Laminarionema elsbetiae ELsaHSoW15)
GCGCTCTACAGCCCTGAGATACAGTCAAAAAGTTGGACAGGAGTTAGACA
GAAGACCGGCCGATTACTGCTGCCACATTGCCCTCTTGTGTTTTAGCCAA
GAGGATGCCGAGCAAGTGTCGCCATGTTGGCTGTAGCAAGCGGCCCAACT
ACGGTGCTGCCGGAACAAAAAGAGCGGAGTTCTGCTCTGGACACAAGAAG
GAGGGGATGGTGAATGTCAGGGACAAGATGTGCGCTCGCCACGGTTGCAC
CAAGCAATCAAACTATGGTGTTGCCGGCAGCAAAACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9951:6905..7191+

>mRNA_L-elsbetiae_contig9951.18882.1 ID=mRNA_L-elsbetiae_contig9951.18882.1|Name=mRNA_L-elsbetiae_contig9951.18882.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=366bp|location=Sequence derived from alignment at L-elsbetiae_contig9951:6905..7191+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGAGCAAGTGTCGCCATGTTGGCTGTAGCAAGCGGCCCAACTACGG
TGCTGCCGGAACAAAAAGAGCGGAGTTCTGCTCTGGACACAAGAAGGAGG
GGATGGTGAATGTCAGGGACAAGATGTGCGCTCGCCACGGTTGCACCAAG
CAATCAAACTATGGTGTTGCCGGCAGCAAAACAATGCCGAGCAAGTGTCG
CCATGTTGGCTGTAGCAAGCGGCCCAACTACGGTGCTGCCGGAACAAAAA
GAGCGGAGTTCTGCTCTGGACACAAGAAGGAGGGGATGGTGAATGTCAGG
GACAAGATGTGCGCTCGCCACGGTTGCACCAAGCAATCAAACTATGGTGT
TGCCGGCAGCAAAACA
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