mRNA_L-elsbetiae_contig9950.18881.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9950.18881.1
Unique NamemRNA_L-elsbetiae_contig9950.18881.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9950.18881.1 vs. uniprot
Match: D7G0X2_ECTSI (HDAC_interact domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0X2_ECTSI)

HSP 1 Score: 444 bits (1143), Expect = 8.300e-144
Identity = 222/257 (86.38%), Postives = 241/257 (93.77%), Query Frame = 1 
Query:    1 RKQSQQGEVSEVTSEMWSNTPLNELDLTKSEKGGPSYRHLPKNFPLLSCSERTSVESSVLNDVWVSVPVGSEGGGSDVAFKHIRKNQHEDLLFKCEDERFELDMVIEAGSSAINLLEPMADEIRAIDNTAGARYQFKMDRRVLSPVQLAAITRIYGEHGAEILELLRKNPCKTVPVILARLRQKDVEWRVSRERLNNAWSTVQRSTYYKSLDRRSLDLKHEDKKAHVPKALVADIAHRRTGLLAKEEGPKAIDRAAL 771
            ++ SQQGEV+E+ SEMW+NTPLNELDLT SEKGGPSYRHLPKNFPLLSCSERTS+E SVLND+WVSVPVGSEGGGSDVAFKH+RKNQHEDLLFKCEDERFELDMVIEAGSSAI+LLEPM +EI+ ID TAGARYQFK+DRRVLSPVQLAAITRIYG+HGAEILELLRKNPCKTVPVILARLRQKDVEWRVSRERLN  WS VQRSTYYKSLDRRS+D+K+EDKKAH  + LVADI HRRT LLAKEE PK++DRAAL
Sbjct:  305 KEASQQGEVNEIASEMWTNTPLNELDLTLSEKGGPSYRHLPKNFPLLSCSERTSLEQSVLNDLWVSVPVGSEGGGSDVAFKHMRKNQHEDLLFKCEDERFELDMVIEAGSSAISLLEPMEEEIKCIDKTAGARYQFKLDRRVLSPVQLAAITRIYGDHGAEILELLRKNPCKTVPVILARLRQKDVEWRVSRERLNKLWSNVQRSTYYKSLDRRSIDVKNEDKKAHSARVLVADITHRRTALLAKEEEPKSLDRAAL 561
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BLAST of mRNA_L-elsbetiae_contig9950.18881.1 vs. uniprot
Match: A0A6H5KFU2_9PHAE (Sin3a_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFU2_9PHAE)

HSP 1 Score: 257 bits (656), Expect = 5.130e-76
Identity = 132/154 (85.71%), Postives = 140/154 (90.91%), Query Frame = 1 
Query:  310 MVIEAGSSAINLLEPMADEIRAIDNTAGARYQFKMDRRVLSPVQLAAITRIYGEHGAEILELLRKNPCKTVPVILARLRQKDVEWRVSRERLNNAWSTVQRSTYYKSLDRRSLDLKHEDKKAHVPKALVADIAHRRTGLLAKEEGPKAIDRAAL 771
            MVIEAGSSAINLLEPM +EI+ ID TAGARYQFK+DRRVLSPVQLAAITRIYG+HGAEILELLRKNPCKTVPVILARLRQKDVEWRVSRERLN  WS VQRSTYYKSLDRRS+DLK+EDKKAH  + LVADI HRR  LLAKEE PK +DRAAL
Sbjct:    1 MVIEAGSSAINLLEPMEEEIKCIDKTAGARYQFKLDRRVLSPVQLAAITRIYGDHGAEILELLRKNPCKTVPVILARLRQKDVEWRVSRERLNKLWSNVQRSTYYKSLDRRSIDLKNEDKKAHSARVLVADITHRRAALLAKEEEPKPLDRAAL 154
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BLAST of mRNA_L-elsbetiae_contig9950.18881.1 vs. uniprot
Match: A0A7S3XWL9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWL9_HETAK)

HSP 1 Score: 234 bits (597), Expect = 3.310e-72
Identity = 122/238 (51.26%), Postives = 162/238 (68.07%), Query Frame = 1 
Query:   19 GEVSEVTSEMWSNTPLNELDLTKSEKGGPSYRHLPKNFPLLSCSERTSVESSVLNDVWVSVPVGSEGGGSDVAFKHIRKNQHEDLLFKCEDERFELDMVIEAGSSAINLLEPMADEIRAIDNTAGAR-----YQFKMDRRVLSPVQLAAITRIYGEHGAEILELLRKNPCKTVPVILARLRQKDVEWRVSRERLNNAWSTVQRSTYYKSLDRRSLDLKHEDKKAHVPKALVADIAHRR 717
            G   ++  ++W + PL+E+D  +  K  PSYR LPK++    CSER+ +E  VLND WVSVPVGSE    + +FKH+RKNQ+E+ LF+CEDERFE+DMVI++ ++A   LEP+A E+RA+    G R      Q+K+D+R LS V L AI RIYG+HGAEILELL+KNP   +PVIL RL+QKD EWR +R+ LN  W  VQ   ++KSLD RS   K  DKK    +ALV ++  RR
Sbjct:   56 GTADQLGGDLWYSMPLSEIDFGQCRKCTPSYRALPKDYLRPPCSERSLLEHRVLNDTWVSVPVGSE---DNYSFKHMRKNQYEEALFRCEDERFEVDMVIDSNAAAAAALEPLAREVRALQAAEGTRGGERRLQYKLDKRALSVVHLNAIIRIYGDHGAEILELLKKNPAGAIPVILKRLKQKDAEWRKARQDLNKHWKEVQEKNWHKSLDHRSFYFKQADKKQCSQRALVQEVKERR 290
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BLAST of mRNA_L-elsbetiae_contig9950.18881.1 vs. uniprot
Match: A0A835ZD67_9STRA (HDAC_interact domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD67_9STRA)

HSP 1 Score: 225 bits (574), Expect = 1.010e-63
Identity = 128/278 (46.04%), Postives = 172/278 (61.87%), Query Frame = 1 
Query:   34 VTSEMWSNTPLNELDLTKSEKGGPSYRHLPK--------------------NFPLLSCSERTSVESSVLNDVWVSVPVGSEGGGSDVAFKHIRKNQHEDLLFKCEDERFELDMVIEAGSSAINLLEPMADEIRAI-DNTAGARYQFKMDRRVLSPVQLAAITRIYGEHGAEILELLRKNPCKTVPVILARLRQK--------------------DVEWRVSRERLNNAWSTVQRSTYYKSLDRRSLDLKHEDKKAHVPKALVADIAHRRTGLLAKEEG 744
            +T+++W +TPL E+D ++  K  PSYR LPK                    ++P  SCSER+ +E SVLND WVSVPVGSE   +   FKH+RKNQ+E+ LF+CEDERFE+DMVI++ +S I LLEP+A+EI  +  + + A YQFK+D+R L  V L AITRIYG+ GAE+LELLRKNP   VP+IL RL+QK                    D EWR +R  L+  W  +   TY+KSLDRRS   K  D++A+  +AL+A+I        A+E+G
Sbjct:  632 LTTDVWYSTPLAEIDFSQCRKCTPSYRALPKGASQFGWAQFCGTFRASQALDYPRPSCSERSYMEDSVLNDTWVSVPVGSEDSSN---FKHMRKNQYEEALFRCEDERFEIDMVIDSTTSTIKLLEPLAEEIAQLAQHGSNAHYQFKLDKRTLGVVHLNAITRIYGDRGAEVLELLRKNPAGAVPLILKRLKQKXXXXXXXXXXXXXXXXXXXKDTEWRQNRSSLDRQWRDLLERTYHKSLDRRSFYFKSADRRAYGHRALLAEIRDLAAARAAEEDG 906
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BLAST of mRNA_L-elsbetiae_contig9950.18881.1 vs. uniprot
Match: A0A7S1UGB0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UGB0_9STRA)

HSP 1 Score: 210 bits (535), Expect = 2.480e-63
Identity = 112/241 (46.47%), Postives = 158/241 (65.56%), Query Frame = 1 
Query:   19 GEVSEVTSEMWSNTPLNELDLTKSEKGGPSYRHLPKNFPLLSCSERTSVESSVLNDVWVSVPVGSEGGGSDVAFKHIRKNQHEDLLFKCEDERFELDMVIEAGSSAINLLEPMADEIRAI-------DNTAGAR-----YQFKMDRRVLSPVQLAAITRIYGEHGAEILELLRKNPCKTVPVILARLRQKDVEWRVSRERLNNAWSTVQRSTYYKSLDRRSLDLKHEDKKAHVPKALVADI 705
            G+   + ++ W    ++++D T+  +  PSYR LP+ FP   CS R++ +  VLND WVS+PVGSE    + +FKH+R+N +E+ LFKCEDERFE+DMVI++ +S I +LEP+A EI A+         TAG       +Q+K+D R LS V + AI+RIYGEHGAEI ELLRKNP   VPV+L RL+QKD+EWR +R+ L   W  +  + ++KSLD RS   + +DK+A   + L  DI
Sbjct:   89 GKAGGLAAQPWYGMAVSDVDFTQCRRCTPSYRALPQYFPRPPCSMRSTDDGKVLNDQWVSLPVGSE---ENYSFKHMRRNTYEETLFKCEDERFEMDMVIDSNASTIRVLEPLAAEIEALRVAEGDGGETAGIAGAVPAFQYKLDPRTLSRVHINAISRIYGEHGAEIQELLRKNPAGAVPVVLNRLKQKDIEWRRARQELARQWKGLMEANFHKSLDHRSFYFRTQDKRAISIRGLTQDI 326
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BLAST of mRNA_L-elsbetiae_contig9950.18881.1 vs. uniprot
Match: A0A7S2SFF8_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SFF8_9STRA)

HSP 1 Score: 217 bits (552), Expect = 8.760e-61
Identity = 108/234 (46.15%), Postives = 152/234 (64.96%), Query Frame = 1 
Query:   19 GEVSEVTSEMWSNTPLNELDLTKSEKGGPSYRHLPKNFPLLSCSERTSVESSVLNDVWVSVPVGSEGGGSDVAFKHIRKNQHEDLLFKCEDERFELDMVIEAGSSAINLLEPMADEIRAID--NTAGARYQFKMDRRVLSPVQLAAITRIYGEHGAEILELLRKNPCKTVPVILARLRQKDVEWRVSRERLNNAWSTVQRSTYYKSLDRRSLDLKHEDKKAHVPKALVADIAHR 714
            G   +     W + PL ++D +   +  PSYR LP  +P   CSERT++  SVLND WVSVP+GSE   S    K+ R+NQ+E+ LFKCED+R+E+DMVI++  +AI  LEP+A E+ A+   N +  ++++++++R LS + L AI RIYG+HG EILELLR+NP   +PVIL RL++KD EW   R+ LN  W       Y KSLD RS   KH +K+A+  K LVA+I  +
Sbjct:  568 GATDDPVESAWFSMPLTDIDFSNCRRCTPSYRALPAAYPKAPCSERTAMCRSVLNDTWVSVPLGSEDSSS----KNHRRNQYEEALFKCEDDRYEIDMVIDSNKAAIRALEPLAQEVEALSLKNGSNFKFRYRLEKRTLSVIHLKAIARIYGDHGTEILELLRRNPAAAIPVILKRLKEKDDEWCRDRQELNKGWKDQMEKNYAKSLDHRSFYFKHHEKRAYTQKVLVAEIKEK 797
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BLAST of mRNA_L-elsbetiae_contig9950.18881.1 vs. uniprot
Match: A0A7S3HNY2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNY2_9STRA)

HSP 1 Score: 210 bits (534), Expect = 1.490e-60
Identity = 111/252 (44.05%), Postives = 155/252 (61.51%), Query Frame = 1 
Query:   22 EVSEVTSEMWSNTPLNELDLTKSEKGGPSYRHLPKNFPLLSCSERTSVESSVLNDVWVSVPVGSEGGGSDVAFKHIRKNQHEDLLFKCEDERFELDMVIEAGSSAINLLEPMADEIRAIDN-----------------TAGA-------RYQFKMDRRVLSPVQLAAITRIYGEHGAEILELLRKNPCKTVPVILARLRQKDVEWRVSRERLNNAWSTVQRSTYYKSLDRRSLDLKHEDKKAHVPKALVADI 705
            E  E  S++W   PL+E+D  +  K  PSYR LP+++P   C+ER+  E+ VLND WVS+P+GSE      +FKH+RKNQ+E+ LFKCEDERFE+DMVI++    I +LEP+A+EI  + +                 T G        R+ F++++R LS + L +I RIYG+HG EILELLR+NP  T+PV+L RL+QKD+EWR +R  LN  W  V    + +S D RS   +  DKK    + LV +I
Sbjct:  184 EYEEHKSDVWYAVPLSEIDFAQCRKCTPSYRALPRDYPKAKCTERSEEEAKVLNDQWVSIPIGSE---ESYSFKHMRKNQYEEALFKCEDERFEIDMVIDSNMCTIRVLEPLAEEIATLKSIETIPRGTLHGDAATGQTQGGASTSIAPRFSFQLEKRHLSTIHLNSIARIYGDHGEEILELLRRNPAGTIPVLLKRLKQKDLEWRKARTELNKHWREVVEKNHTRSFDHRSFYFRQHDKKYLSTRQLVTEI 432
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BLAST of mRNA_L-elsbetiae_contig9950.18881.1 vs. uniprot
Match: A0A067BV90_SAPPC (HDAC_interact domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BV90_SAPPC)

HSP 1 Score: 213 bits (543), Expect = 5.540e-60
Identity = 112/219 (51.14%), Postives = 146/219 (66.67%), Query Frame = 1 
Query:   43 EMWSNTPLNELDLTKSEKGGPSYRHLPKNFPLLSCSERTSVESSVLNDVWVSVPVGSEGGGSDVAFKHIRKNQHEDLLFKCEDERFELDMVIEAGSSAINLLEPMADEIRAIDNTAGARYQFKMDRRVLSPVQLAAITRIYGEHGAEILELLRKNPCKTVPVILARLRQKDVEWRVSRERLNNAWSTVQRSTYYKSLDRRSLDLKHEDKKAHVPKALVA 699
            E+W   PL E DL++  +  PSYR LP ++P+   S R+ +E +V ND WVSVP GSE    D +FK++RKNQ+E+ LFKCEDERFE+DMVI+A +S I +L P+A EI  +  T+   +Q+ +D+  L    L AITRIYGE G +ILELLRK+P   +PVIL RL QKD EWR +R+ LN  W  V    Y+KSLD  S   K +DKKA   KAL+A
Sbjct:  268 EIWPFIPLAETDLSQCRRATPSYRALPSSYPIPPSSSRSKMERAVCNDAWVSVPTGSE----DFSFKNMRKNQYEEALFKCEDERFEIDMVIDANASTIAILTPLAKEIETLSATSPTGWQYVLDKGALRVTHLNAITRIYGEAGHQILELLRKHPAGAIPVILKRLLQKDEEWRRARQDLNKQWKDVNEKNYHKSLDHSSFYFKQKDKKATSAKALLA 482
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BLAST of mRNA_L-elsbetiae_contig9950.18881.1 vs. uniprot
Match: A0A5A8E0Z5_CAFRO (HDAC_interact domain-containing protein n=6 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E0Z5_CAFRO)

HSP 1 Score: 214 bits (544), Expect = 1.070e-59
Identity = 112/228 (49.12%), Postives = 149/228 (65.35%), Query Frame = 1 
Query:   25 VSEVTS-EMWSNTPLNELDLTKSEKGGPSYRHLPKNFPLLSCSERTSVESSVLNDVWVSVPVGSEGGGSDVAFKHIRKNQHEDLLFKCEDERFELDMVIEAGSSAINLLEPMADEIRAIDNTAGARYQFKMDRRVLSPVQLAAITRIYGEHGAEILELLRKNPCKTVPVILARLRQKDVEWRVSRERLNNAWSTVQRSTYYKSLDRRSLDLKHEDKKAHVPKALVADI 705
             SEVT+ + +   P+ +LD     +  PSYR LP  +P L CSER   E +VLND WVS+  GSE    D +FKH+R+N +ED LF+CEDER+E+DMVI+  +SAI +L+P+A EI  +    G ++QF++DRR L  + L AI R+YGE G E+LELLRKNP   VPVIL RL QKDVEW+ +R   N  W  V    YY+SLD RS   +  DK+A   K+LV ++
Sbjct:  426 ASEVTATDAYHTLPVADLDFRGCRRCTPSYRSLPDGYPQLRCSERAPWEQAVLNDRWVSIQTGSE----DYSFKHMRRNIYEDALFRCEDERYEVDMVIDTNASAIRILQPLAQEIHTLRAAKGFQWQFRLDRRALGVIHLKAIARVYGERGEEMLELLRKNPGGAVPVILRRLMQKDVEWKQARRVHNERWRGVMADNYYRSLDHRSFYFRQHDKRAIAAKSLVQEM 649
[Close]
BLAST of mRNA_L-elsbetiae_contig9950.18881.1 vs. uniprot
Match: A0A1V9ZFI4_9STRA (Paired amphipathic helix protein Sin3 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZFI4_9STRA)

HSP 1 Score: 213 bits (542), Expect = 1.900e-59
Identity = 111/219 (50.68%), Postives = 145/219 (66.21%), Query Frame = 1 
Query:   43 EMWSNTPLNELDLTKSEKGGPSYRHLPKNFPLLSCSERTSVESSVLNDVWVSVPVGSEGGGSDVAFKHIRKNQHEDLLFKCEDERFELDMVIEAGSSAINLLEPMADEIRAIDNTAGARYQFKMDRRVLSPVQLAAITRIYGEHGAEILELLRKNPCKTVPVILARLRQKDVEWRVSRERLNNAWSTVQRSTYYKSLDRRSLDLKHEDKKAHVPKALVA 699
            E+W   PL E DL++  +  PSYR LP ++P+   S R+ +E SV ND WVSVP GSE    D +FK++RKNQ+E+ LFKCEDERFE+DMVI+A +S I +L P+A EI  +  T+   +Q+ +D+  L    L AITRIYGE G +ILELLRK+P   +PVIL RL+QKD EWR +R+ LN  W  V    Y+KSLD  S   K +DKKA   K  +A
Sbjct:  619 EIWPFIPLAETDLSQCRRATPSYRALPSSYPIPPSSSRSKMERSVCNDAWVSVPTGSE----DFSFKNMRKNQYEEALFKCEDERFEIDMVIDANASTIAILTPLAKEIETLQATSPTGWQYVLDKGALRVTHLNAITRIYGESGHQILELLRKHPAGAIPVILKRLQQKDEEWRRARQDLNKQWKEVNEKNYHKSLDHSSFYFKQKDKKATSTKVFLA 833
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9950.18881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0X2_ECTSI8.300e-14486.38HDAC_interact domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KFU2_9PHAE5.130e-7685.71Sin3a_C domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S3XWL9_HETAK3.310e-7251.26Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835ZD67_9STRA1.010e-6346.04HDAC_interact domain-containing protein n=1 Tax=Tr... [more]
A0A7S1UGB0_9STRA2.480e-6346.47Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2SFF8_9STRA8.760e-6146.15Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S3HNY2_9STRA1.490e-6044.05Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A067BV90_SAPPC5.540e-6051.14HDAC_interact domain-containing protein n=1 Tax=Sa... [more]
A0A5A8E0Z5_CAFRO1.070e-5949.12HDAC_interact domain-containing protein n=6 Tax=Ca... [more]
A0A1V9ZFI4_9STRA1.900e-5950.68Paired amphipathic helix protein Sin3 n=1 Tax=Thra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9950contigL-elsbetiae_contig9950:1369..6623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score451.1
Seed ortholog evalue3.6e-124
Seed eggNOG ortholog2880.D7G0X2
KEGG koko:K11644
KEGG Pathwayko04139,ko04919,ko05016,ko05202,map04139,map04919,map05016,map05202
Hectar predicted targeting categoryother localisation
EggNOG free text desc.histone deacetylation
EggNOG OGsCOG5602@1,KOG4204@2759
Ec32 ortholog descriptionPaired amphipathic helix
Ec32 orthologEc-23_001970.1
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons7
Model size771
Cds size771
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817054.0409434-CDS-L-elsbetiae_contig9950:1368..14261622817054.0409434-CDS-L-elsbetiae_contig9950:1368..1426Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9950 1369..1426 -
1691684012.4018877-CDS-L-elsbetiae_contig9950:1368..14261691684012.4018877-CDS-L-elsbetiae_contig9950:1368..1426Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9950 1369..1426 -
1622817054.0547724-CDS-L-elsbetiae_contig9950:2125..22681622817054.0547724-CDS-L-elsbetiae_contig9950:2125..2268Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9950 2126..2268 -
1691684012.413593-CDS-L-elsbetiae_contig9950:2125..22681691684012.413593-CDS-L-elsbetiae_contig9950:2125..2268Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9950 2126..2268 -
1622817054.0692365-CDS-L-elsbetiae_contig9950:3180..33571622817054.0692365-CDS-L-elsbetiae_contig9950:3180..3357Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9950 3181..3357 -
1691684012.4230525-CDS-L-elsbetiae_contig9950:3180..33571691684012.4230525-CDS-L-elsbetiae_contig9950:3180..3357Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9950 3181..3357 -
1622817054.082866-CDS-L-elsbetiae_contig9950:3650..37611622817054.082866-CDS-L-elsbetiae_contig9950:3650..3761Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9950 3651..3761 -
1691684012.4329462-CDS-L-elsbetiae_contig9950:3650..37611691684012.4329462-CDS-L-elsbetiae_contig9950:3650..3761Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9950 3651..3761 -
1622817054.0938475-CDS-L-elsbetiae_contig9950:4928..50571622817054.0938475-CDS-L-elsbetiae_contig9950:4928..5057Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9950 4929..5057 -
1691684012.4443426-CDS-L-elsbetiae_contig9950:4928..50571691684012.4443426-CDS-L-elsbetiae_contig9950:4928..5057Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9950 4929..5057 -
1622817054.1040485-CDS-L-elsbetiae_contig9950:6107..62151622817054.1040485-CDS-L-elsbetiae_contig9950:6107..6215Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9950 6108..6215 -
1691684012.4561713-CDS-L-elsbetiae_contig9950:6107..62151691684012.4561713-CDS-L-elsbetiae_contig9950:6107..6215Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9950 6108..6215 -
1622817054.1146147-CDS-L-elsbetiae_contig9950:6578..66231622817054.1146147-CDS-L-elsbetiae_contig9950:6578..6623Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9950 6579..6623 -
1691684012.4702647-CDS-L-elsbetiae_contig9950:6578..66231691684012.4702647-CDS-L-elsbetiae_contig9950:6578..6623Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9950 6579..6623 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9950.18881.1prot_L-elsbetiae_contig9950.18881.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9950 1369..6623 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9950.18881.1

>prot_L-elsbetiae_contig9950.18881.1 ID=prot_L-elsbetiae_contig9950.18881.1|Name=mRNA_L-elsbetiae_contig9950.18881.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=257bp
RKQSQQGEVSEVTSEMWSNTPLNELDLTKSEKGGPSYRHLPKNFPLLSCS
ERTSVESSVLNDVWVSVPVGSEGGGSDVAFKHIRKNQHEDLLFKCEDERF
ELDMVIEAGSSAINLLEPMADEIRAIDNTAGARYQFKMDRRVLSPVQLAA
ITRIYGEHGAEILELLRKNPCKTVPVILARLRQKDVEWRVSRERLNNAWS
TVQRSTYYKSLDRRSLDLKHEDKKAHVPKALVADIAHRRTGLLAKEEGPK
AIDRAAL
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mRNA from alignment at L-elsbetiae_contig9950:1369..6623-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9950.18881.1 ID=mRNA_L-elsbetiae_contig9950.18881.1|Name=mRNA_L-elsbetiae_contig9950.18881.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5255bp|location=Sequence derived from alignment at L-elsbetiae_contig9950:1369..6623- (Laminarionema elsbetiae ELsaHSoW15)
CGTAAACAGTCTCAACAAGGGGAGGTCAGCGAAGTGACATCGGAGGTGAG
AGAAAACACAAAGAGGCGTTTTTTTTTAAAGAAACCGGTACATACTGCTG
TGTCAGTCTTCCATCTTCGCTCGCGTCTTTTTTTGTTGAATAAAGTGTAA
AGGTTCTACCCATGTTAACGTCGTCAGCGATCCGAAAGGTTGTGGCGCGG
TCTCTTCATCCAGTACCTCTCAAATGCCCGTACTAATCGGAATACTTGAT
GCGAATTCCCGTGGCGCGGTCCGAAAGGTTGTTTTGTGCCGGTTGTTCTC
CCAACTAAAGCTGCTTGTGGCGTTCGGCTTTATTTGTCTTCCTTGCCTGC
CCCCCCCCCATCTATCCTTTGTATTGCTTGCAAACGCAACCGCTAAATAC
GTCCGCAGATGTGGAGCAACACGCCCCTTAACGAGCTGGACCTGACAAAG
AGTGAGAAAGGTGGCCCCAGCTACCGGCATCTGCCCAAGAACTTCCCGCT
CTTGAGCTGCAGCGAGGTAAAGCGAAGCCACTGGCGCCATTTTTGCGGAT
TTAATGTACATATTTATGTAGTTTGAAAAGTATGAATGAACTAATTAAAT
ATTCCCTCCCAAAAACCGAAAACTATGTAAGGAGTAAATAATAAATTCAT
CAATAAAAACACCCATATTCCTGCGCCCCCAAACCAATAATTTATAATTT
TTATAGAATTGAACACACCATATTGTTTGGTTGTTTGTTTGGTTGTTTGT
ATTCTCGACCTGCGTCGTGTCCTATCCGAGGGTATTTTATTTTATTTTAT
AAAAAAATAAACAATTAATCAAAGATGCAACGTACCCCACACTAGAGCAA
GGACTCGATATGGGGTTCAAACGGTATTCCTATACAGATACGTAATATTT
GGCGAACCAAGCAGAAATACAACCTAAAATATCAGAAGAGTTCAACATCT
CCCCTGCAAAGATTTAAGATTTGCGAGGTCGGCCAACAATTATTCAGGCG
GGTAGAGCCCGCCGTGATGCCGTAATAGGAACACATCGCATTGTTGAACT
ATATGTGGGTATCCCCTGTTGGTGGGCGGTATAATCGGGGGTAGGAATAT
GTAGACCCGTGCGGGCCTGGCCGGCGAGAACCCGGCGTACCGCCCCATCC
TCATCCTCATCCCATCCCATCCCATCCCATCTGCTCTTATTCCTTGCTCA
TTACCCGTTTCTGTATGTACCACCTAATCATCATCCCATCCCATCCCATC
CCATCTGCTCTTGTTCCTTGCTCGTTACCCGTTTCTGTGTGTACCGCCTA
ATCCTCATCCTCATCCCCATCCCATCCCATCCCATCCCATCCCATCCCAT
CTGCTCTTGTTCTTTGCTCGTTACCCGTTTCTGTGTGTACCGCCTAATCC
TCATCCTCATCCCTATCCCATCCCATCCCATCCCATCCCATCCCGTCCCG
TCCCGTCCCGTCCCGTCCCGTCCCGTCCCGTCCCGTCCCGTCCCGCCCCG
TCCCGCCCCGCCCCGCCCCATCCCGTCTGCTCTTGTTCCTTGCTCCCTTT
TTGAAACCCTCCGCAGCGCACGTCCGTTGAGTCGTCGGTGCTGAACGACG
TGTGGGTCAGCGTGCCGGTGGGGTCCGAGGGGGGCGGCAGCGACGTCGCC
TTCAAGCACATCCGCAAGAACCAGCACGAGGACCTCCTGTTCAAGGTATG
TTAATGGGTGCACATGCTAAAAAAAGTGCGCACAAATCAGCTCGATTCGC
CGGGAGGATTGTCGTCTGTGATCGGTGTGGGTGTTTCCCCATACAAGGTG
GTTGCCCCCCTTATTTGGCTTGCTTCTTGTTGTATTTAGTGGGAAGCGTC
AGCGGGTCTATGCTGCAAAGTGCGTTCAACCTGCGGGAAAACACAGCCTG
TCCGGGGGGGGATTCCTGTTGTTGTAGATACACCCCCCCCCCCCCCCCCC
CACCTCCCGCGGCTGCAAAGTGGTGCACTGCGCCCGACGCGCAAAGCGGG
GGAAAAAACGAAAATAACAGAACAGACCCGCGACAGCGGCGGCGGCGGCG
GCGCCCGCGGGGAGACAGACCGTTGGCCCTTCCTCCTTTATCGTCGAGTT
CAATTTCAACACTAAACAATACTCGAATTTCGATCTACATACAATACTCG
AGAGATGAAATCGGAGCACAATTGTAGCGCCCTTGTGACTACTGCTGTAC
GTCGCTGTTTTTTTTTTATATATATATTCACTTGTGTGTGTGTAAATACG
TAAATACGTAAATACAACGCCAGCAGTCTAACTACATCCAACGGCCAAAA
AAGATTTTCCGGCGGGGCTACTTTCGCAACACAGCAGTATTTAGTAGGGA
ACCCCCCTCCCTCACGCCGTCCCCGGCTTCCAGTGGCGCAGACCCGAGTG
CAATTCGTGTGGTGCGTTTCTGGGTCGAGCAGAGTCTGTTGCCTGCCTGC
CTCTCTTGGCGGCGGCGGCGGTGTTTTTGTCTTCTGTTTATTCCCCTGGG
TGTGTCTTGTGAGTGCGAGGGTTGCAAGTCACTGCTGCTGCTGCTGCTGC
TGCTTTTTTTTTGCACTGCTGCTCCTCTTGTGTATGTTACGTCTGTATTT
ATTGTTTTGCTCGAGGAACTTTTGGCTGTACATACATACACGGTATATTG
CTGGCCCCGTGCGGAATGCAAAGAACGGGCCCGGCCTGTCCAGGCTTACC
GCGTTTTGGAACGCCTCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCC
GGGCGTGCATGCAGTACACGTCATGAAGGTGTGTTACGTAAAAAGTGGAA
CACGCCTCTTGGTGTTTGATTGTTGTTCCTTTCCCTACGATGCCCGCTGC
CGTCGGTTACAGTGCGAGGACGAGCGGTTCGAGCTGGACATGGTCATCGA
GGCCGGTAGCAGCGCGATCAACCTGCTGGAACCGATGGCGGACGAGATCA
GGGCCATCGACAACACGGCAGGGGTAAGAGGAGCCCCTCTTGGTGGTGCT
GTTGTGGTGTGCTGGTTGTCACATGTCCGTGTCTGTACTCGACGCCTGCT
TTCGTGAGCTCTCTCTTCTCTCTTCTCTCTTCTTTCCCAGGCATGCCCCC
CCCCCACCCTCACCCTGATATTTTTATCCACGGGACACCCTCCCCCCCCC
CCGCCGAACTCTTGGAACGTTTTCCAGCCCCCCTCCCGACGGACACTGCC
CCCACCCCGAATTTTCCCTCCTTGGGACTCCATCCACGGTGCCCCCCCCC
CCTGCGCGACTGACAGGCCCGCTACCAGTTCAAGATGGACAGGCGCGTGC
TGAGCCCCGTCCAGCTGGCCGCCATCACCCGCATCTATGGAGAACACGGG
GCGGAGATCCTGGAGCTGCTGAGGAAGAACCCCTGCAAGACCGTGCCGGT
CATCCTCGCCCGCCTCAGGCAGAAGGACGTGGAGTGGAGAGTGGTGAGTA
GGAGGGTTGGGGGTTTTCAAGTCTGTGTGGCTTGTCTTGGTTGGGCGCTG
TTTCGATTGTTTGCTCTATTGGGGTCTTGTCTCGTGCTTCTACTTTTTGT
TTCGTTGAACTGGTGGTGGGTGGTGGGTGGTGGGTGGTTGGGGGATTGGG
GGTTTGGGTGGGTAGGGCGAGTGAGTGGCAATCTGCACCTTTCCGGCCGT
CTCCTCGACCTTTTATCTCGGTGGGTCGGGGCGCGAAGCACTGCTAGGTT
TGGCCATGTTTGGTGTGTGTGTGTGTTTGTTTTTTTTATTTATTATTATT
TCTTTTTCACGTCTGTTTCCAGTGTGCTCAATAGGCTCCTTGTCACGAGG
ACATCTTCCCAAGAGTACTGCTGTGTGGTGTTGGTGTTGCGCTGCTGTGC
GGGTTGAGGAGGGTTTCCTACGTAGTTAGTTGCCCGGCGTTCGTTCGCCC
TGTTGCACGGCGCGGTGTGCTGGTTGTCTAATGGTGTGGTTTTTGGCCGG
TCAAAGTACGTACGTAGTCTTCGTCCCTTTTCCTTTTTTGCGAAACGCAA
CCGGATCAGCTTGTTGTAGTCTTTACTGACGAAAGCGCCAGCAGTAAAGC
GGGCGGACGACCATGTCATGTGCGATGCCTGTCTAGTACTCCACACATGG
ATGTTCGATGTCTCTTTCTGCGTCTATTTGTGTCTATTCATTTATTTATC
TCTACCTTTTAATATTTTTCTGCTTCATTTTTGTTTTTTTCTTTTTGTTT
TTCCCGGCCTGGCGCCCCGTCCCCCCCTAGTATGAGTTCACGGCTCCCCC
ATGCATGCGTTTCTTTGACTTTTTCTCTTCCCTTCGCTTCCTTTCTTGTG
TTTTTTTCCCCCATTTTCCGATAAACCCGGTACATGTGTCACGGAACCCC
CGCAGTCCCGGGAGCGGCTGAACAACGCGTGGTCGACCGTCCAGCGCAGC
ACGTACTACAAGTCGCTAGACAGGCGATCGCTCGACCTCAAGCACGAGGA
CAAGAAGGCGCACGTCCCGAAGGCTCTCGTCGCCGACATCGCCCACAGGT
GACCCAAAGGCCTGTTACTCGATCGATGCTGCTTCTGCCGCTGCTGGCGG
TGGATATGGCGGTGGAGGTGGTGGTGGTGGTGTCTGTGTGTGTGTGTGGA
TGTTGTGGAAATGTTAATGTTAGCATCGACCGCGCTGCCCGATCGGCCTT
GAAAATGGCGGGCAAGAAACGCAACAACGTTTTCCTCGGTGTTGGTACCG
TTCCTGTGTGTGCGTGTTTGTGTATGTGTGTGTATGTTTTTTCGTTTTTT
TTACGCAATGGTCGTTGTTGTCGTGGGTTTTGGTGGTACATAAACTGCCG
CACCGTGGTCTCCTCCGATACCGGACTGCCCAAATGGGCGAAGCTCGTGG
ACAGCGCCACACACACACACACACACTCACACGGCATCTACGGCATCTAC
AAAATATATGCCCTATGTACATGCCGTAATCCGACCCATCTTGTAGGCTC
GCCCAGATGACGTCCCGGTTGATCGGCTTACCCCTTTAGCTGGTTGGCGC
GTTTGTGGGCACCGGAAAGCTTGCCCGCCGGTTCACGCCACGCCATACCC
CTGAGCCGGCCATGTGCAGAGTATGTAACTGTCAGCGAACAGCATATTGT
AGCCCCGCCCCCCTCCCTGCCTCTGGGCCAGCCAGGCCTCAAGTTGCTCT
ATTTTTACACTTTTTTTTTTTTCTGTTTCTTTTTTCTGTGTCTGCAGGCG
GACGGGTCTGCTTGCGAAGGAGGAGGGGCCCAAGGCTATCGACAGGGCGG
CTTTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9950:1369..6623-

>mRNA_L-elsbetiae_contig9950.18881.1 ID=mRNA_L-elsbetiae_contig9950.18881.1|Name=mRNA_L-elsbetiae_contig9950.18881.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1542bp|location=Sequence derived from alignment at L-elsbetiae_contig9950:1369..6623- (Laminarionema elsbetiae ELsaHSoW15)
CGTAAACAGTCTCAACAAGGGGAGGTCAGCGAAGTGACATCGGAGCGTAA
ACAGTCTCAACAAGGGGAGGTCAGCGAAGTGACATCGGAGATGTGGAGCA
ACACGCCCCTTAACGAGCTGGACCTGACAAAGAGTGAGAAAGGTGGCCCC
AGCTACCGGCATCTGCCCAAGAACTTCCCGCTCTTGAGCTGCAGCGAGAT
GTGGAGCAACACGCCCCTTAACGAGCTGGACCTGACAAAGAGTGAGAAAG
GTGGCCCCAGCTACCGGCATCTGCCCAAGAACTTCCCGCTCTTGAGCTGC
AGCGAGCGCACGTCCGTTGAGTCGTCGGTGCTGAACGACGTGTGGGTCAG
CGTGCCGGTGGGGTCCGAGGGGGGCGGCAGCGACGTCGCCTTCAAGCACA
TCCGCAAGAACCAGCACGAGGACCTCCTGTTCAAGCGCACGTCCGTTGAG
TCGTCGGTGCTGAACGACGTGTGGGTCAGCGTGCCGGTGGGGTCCGAGGG
GGGCGGCAGCGACGTCGCCTTCAAGCACATCCGCAAGAACCAGCACGAGG
ACCTCCTGTTCAAGTGCGAGGACGAGCGGTTCGAGCTGGACATGGTCATC
GAGGCCGGTAGCAGCGCGATCAACCTGCTGGAACCGATGGCGGACGAGAT
CAGGGCCATCGACAACACGGCAGGGTGCGAGGACGAGCGGTTCGAGCTGG
ACATGGTCATCGAGGCCGGTAGCAGCGCGATCAACCTGCTGGAACCGATG
GCGGACGAGATCAGGGCCATCGACAACACGGCAGGGGCCCGCTACCAGTT
CAAGATGGACAGGCGCGTGCTGAGCCCCGTCCAGCTGGCCGCCATCACCC
GCATCTATGGAGAACACGGGGCGGAGATCCTGGAGCTGCTGAGGAAGAAC
CCCTGCAAGACCGTGCCGGTCATCCTCGCCCGCCTCAGGCAGAAGGACGT
GGAGTGGAGAGTGGCCCGCTACCAGTTCAAGATGGACAGGCGCGTGCTGA
GCCCCGTCCAGCTGGCCGCCATCACCCGCATCTATGGAGAACACGGGGCG
GAGATCCTGGAGCTGCTGAGGAAGAACCCCTGCAAGACCGTGCCGGTCAT
CCTCGCCCGCCTCAGGCAGAAGGACGTGGAGTGGAGAGTGTCCCGGGAGC
GGCTGAACAACGCGTGGTCGACCGTCCAGCGCAGCACGTACTACAAGTCG
CTAGACAGGCGATCGCTCGACCTCAAGCACGAGGACAAGAAGGCGCACGT
CCCGAAGGCTCTCGTCGCCGACATCGCCCACAGTCCCGGGAGCGGCTGAA
CAACGCGTGGTCGACCGTCCAGCGCAGCACGTACTACAAGTCGCTAGACA
GGCGATCGCTCGACCTCAAGCACGAGGACAAGAAGGCGCACGTCCCGAAG
GCTCTCGTCGCCGACATCGCCCACAGGCGGACGGGTCTGCTTGCGAAGGA
GGAGGGGCCCAAGGCTATCGACAGGGCGGCTTTGGCGGACGGGTCTGCTT
GCGAAGGAGGAGGGGCCCAAGGCTATCGACAGGGCGGCTTTG
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