mRNA_L-elsbetiae_contig995.18878.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig995.18878.1
Unique NamemRNA_L-elsbetiae_contig995.18878.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig995.18878.1 vs. uniprot
Match: A0A6H5JDF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDF5_9PHAE)

HSP 1 Score: 410 bits (1053), Expect = 6.200e-127
Identity = 388/824 (47.09%), Postives = 440/824 (53.40%), Query Frame = 1 
Query:  349 MVLWRHECSRYASSSRIGYHPNHPSANHPSSRPSSAATILRPFSAGRVPEQXXXXXXXXXXXXASSALPRRSIPLQEGGADSRAGWDTHTTGEESGLPLARASGGGVRGISRN-RPSTATPRLA-ADDADELVAGPHPERGFSASGARAVDGCVTNDGTTGGRG-----------MR-ATSARLRSPMDPNTNLAIEGEGEEGDEFLEEIYEDLDDEDDGELDNRISIMESRFSTAGRERPDPAVGDGATGGSDLVGVTRQRQRRSGPQQAAVSATPRSATSQRPPRAPLQQER-----------RLSAESRTNRRLTISSARANGGAARTEAGDGTHGTQQRYPAYPPTAIHDARPPRAIRSRPTSAPV---AFHQD-QGGGRGVNDPMAPLYARWRRLQMSAGAESGDGRAAGVGNGQQQRMRPVRDVATAVPSWDGGV-GNYRPLSSATEEAPGTI-------ATAGRGVEDGAAEQ---QRSSGSVSTPTS--SRPSSAAFRSWIKARPSARSAVSAVSSARTLGMDDPELVHLQLEMESRRGGLSEAALAKMEDHYTAVVLKND----SQSLQRGRTAASPRKKGDRGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKXXKKKRGRKLGGAGKXXXXXXXXXXXXXXXXXXXXXAFMAEHFPPEERQGVSLLGMEQEEECRHASEVLSRAGVWVSSSALRRALVIPTDRPIETCLAGLPSPMEGLRDAPYPTPAPPKPFAVRRRHEP----LSPSPRMSRGRAGVTAGTTALSLRKAGGA-RKRSPTPGRXXXXXXXXXXXXXXRARKKTGVRGR 2667
            MVLWRHECSRYASSSRIGYHPNHPSA+HP+SRPSSAATILRPFSAGRVP+Q            ASSALP RS P    G DS           E+G       G G   ++ + RP +A PRL  AD A+       P+RG SAS AR  DG V    T                MR A++ R +SP++     ++EG G  GD+  +         DDGEL+ RISIMESRFST GRERP  A  DG     D   +  +RQR SG ++      P S  +QRPPRA                 ++ + SR  RR   SSARA G    T AG+ +   Q+             +PPR IRSRPTSAP    +  Q+ Q G   VNDPMAPL+ R  RLQMS    SG  R                 V TAVPSWD  V G  RPLSSAT+ APG         A     V DG  E+   +     ++ P +  SRPSSAAFR WIKARP ARSAVSAVSSARTLGMDDPELVHLQLEMESRRGG+SE+ L +MEDHYTAVVLKN         QRGR A            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XX         G                        AFMAEHFP EE Q           ECR ASE LSRAG+ VSS ALRRALVIPTDRP+ETCLAGLP P EGLRDAP+P   PP               LS SP  SRG      GT     +K GG  R+RSP+P                  R+  G+RGR
Sbjct:    1 MVLWRHECSRYASSSRIGYHPNHPSASHPTSRPSSAATILRPFSAGRVPQQSNDHDHHQQQR-ASSALPPRSQPF---GQDSGL--------YEAGQNRTIEEGAGRADLTPSVRPRSAIPRLQRADAAEPDDNNSRPKRGVSASAARGNDGGVDATSTXXXXXXXXXXXXXXXXMRSASTTRSQSPVNNQDRSSVEGWG--GDDVFDXXXXXXX-XDDGELEARISIMESRFSTVGRERPVSAADDGDVTAGDGGNLDAERQRWSGARRTGAPDAPLSTATQRPPRAXXXXXXXXXXXXXXXXXQMFSRSRPARRHVTSSARAAG----TRAGEDSREQQRLLFPLKTFVSGQKQPPRVIRSRPTSAPADGSSLPQERQRGDVAVNDPMAPLHTRRMRLQMS----SGGSRPPAEXXXXXXXXXXXAGVKTAVPSWDRNVDGGTRPLSSATDGAPGAAXXXXXXAAVYDDNVADGDTEEGGGRFKPNEITPPMNNHSRPSSAAFRGWIKARPGARSAVSAVSSARTLGMDDPELVHLQLEMESRRGGMSESTLVRMEDHYTAVVLKNTIVPRRPQQQRGRPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGTA------------ASGKVYTSAGAFMAEHFPSEEEQ-----------ECRKASEALSRAGLSVSSEALRRALVIPTDRPLETCLAGLPHPTEGLRDAPFP---PPHSLTTLGHXXXXXXLLSSSPLGSRGN---VVGTGPAFGKKVGGVTRRRSPSPA----------------GRRHRGIRGR 756
[Close]
BLAST of mRNA_L-elsbetiae_contig995.18878.1 vs. uniprot
Match: D8LKE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKE2_ECTSI)

HSP 1 Score: 233 bits (595), Expect = 2.730e-63
Identity = 299/758 (39.45%), Postives = 331/758 (43.67%), Query Frame = 1 
Query:  334 SRRESMVLWRHECSRYASSSRIGYHPNHPSANHPSSRPSSAATILRPFSAGRVPEQXXXXXXXXXXXXASSALPRRSIPLQEGGADSRAGWDTHTTGEESGLPLARASGGGVRGISRNRPSTATPRLAADDADELVAGPHPERGFSASGARAVDGCVTNDGTTGGRGMRATSARLRSPMDPNTNLAIEGEGEEGDEFLEEIYEDLDDEDDGELDNRISIMESRFSTAGRERPDPAVGDGATGGSDLVGVTRQRQRRSGPQQAAVSATPRSATSQRPPRAPLQQERRLSAESRTNRRLTISSARANGGAARTEAGDGTHGTQQRYPAYPPTAIHDARPPRAIRSRPTSAPVAFHQDQGGGRGVNDPMAPLYARWRRLQMSAGAESGDGRAAGVGNGQQQRMRPVRDVATAVPSWDGGVGNYRPLSSATEEAPGTIATAGRGVEDGAAEQQRSSGSVSTPTSSRPSSAAFRSWIKARPSARSAVSAVSSARTLGMDDPELVHLQLEMESRRGGLSEAALAKMEDHYTAVVLKNDSQ----SLQRGRTAASPRKKGDRGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKXXKKKRGRKLGGAGKXXXXXXXXXXXXXXXXXXXXXAFMAEHFPPEERQGVSLLGMEQEEECRHASEVLSRAGVWVSSSALRRALVIPTDRPIETCLAGLPSPMEGLRDAPYPTPAPPKPFAVRRRHEP---LSPSPRMSRGRAGVTAGTTALSLRKAGGARKRSPTP 2586
            SRRESMVLWRHECSRYASSSRIGYHPNHPSA+HP+SRPSSAATILRPFSAGRVP+Q   XXXXXXXXX S ALP RS                 T G+ESGL                                          + A   R ++     +G   GR   A SAR RS +                                           R   A    PD                                                         SRT R ++                                                                    +PL       Q  +  E G+G                 DV                                   E+G    + +  + S    SRPSSAAFR WIKARP ARSAVSAVSSARTLGMDDPELVHLQLEMESRRGG+SE+ LA+MEDHYTAVVLKN S       QRGR A SPR        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XX             XXXXXXX              AFMAEHFP EE+QGVSLLGMEQEEECR+AS+ LSR G+ VS+ ALRRALVIPTDRP+ETCLAGLP P EGLRDAP+P P  P    +R  H P   LS SP  SRG   V      L  +      +RSP+P
Sbjct:    6 SRRESMVLWRHECSRYASSSRIGYHPNHPSASHPTSRPSSAATILRPFSAGRVPQQSYDXXXXXXXXXXS-ALPPRS----------------QTLGQESGL------------------------------------------YEAGQNRTIE-----EGA--GRADLAPSARPRSAI------------------------------------------PRLGRADAAEPDDD------------------------------------------------------SSRTKRGVSX--------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPL-----NNQDRSSGEGGEG----------------DDVFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGNTEEGGGRLKPNETTPSMNNHSRPSSAAFRGWIKARPGARSAVSAVSSARTLGMDDPELVHLQLEMESRRGGMSESTLARMEDHYTAVVLKNTSAPRRPQQQRGRPA-SPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------XXXXXXXEGTAASGKVYTSAGAFMAEHFPSEEKQGVSLLGMEQEEECRNASDALSRVGLSVSNEALRRALVIPTDRPLETCLAGLPHPTEGLRDAPFPPP--PTFTTLRNPHPPSLLLSSSPLGSRGH--VVGTGPGLGKKDGSVTLRRSPSP 538
[Close]
BLAST of mRNA_L-elsbetiae_contig995.18878.1 vs. uniprot
Match: A0A836C9T7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9T7_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.740e-6
Identity = 51/149 (34.23%), Postives = 73/149 (48.99%), Query Frame = 1 
Query:   37 VTVFTNIAGAVAVTVDRDSSAGAGRQLSSKPLPESIFNPFQECQSRRQEPATPK-------RRRSTGQDVVAAENPHVASAAAAALAVEGIKKGVRDALDRWALQTSRRESMVLWRHECSRYASSSRIGYHPNHPSANHPSSRPSSAAT 462
            VT+ T+  GAVAV    D S      L    LP + + P+     R     TP          ++  Q+++  ++ HV S          I + ++  L RWAL  + RE+ +LW+ E +RY SSSR+G+HPNHP      SRP SAAT
Sbjct:   32 VTIVTSYYGAVAV----DRSTQKPYTLEIPELPANTYAPYGAHPHRPPPQPTPPPAVHPLLSAKAPSQELLHLDSQHVLS----------IHESIKQELGRWALMRAEREARLLWKMEAARYGSSSRLGHHPNHPVGG---SRPVSAAT 163
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig995.18878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JDF5_9PHAE6.200e-12747.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKE2_ECTSI2.730e-6339.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C9T7_9STRA3.740e-634.23Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig995contigL-elsbetiae_contig995:11584..16121 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size2670
Cds size2670
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig995.18878.1prot_L-elsbetiae_contig995.18878.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig995 11584..16121 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817053.6724865-CDS-L-elsbetiae_contig995:11583..119501622817053.6724865-CDS-L-elsbetiae_contig995:11583..11950Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig995 11584..11950 -
1691684012.1283677-CDS-L-elsbetiae_contig995:11583..119501691684012.1283677-CDS-L-elsbetiae_contig995:11583..11950Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig995 11584..11950 -
1622817053.6834266-CDS-L-elsbetiae_contig995:12415..124801622817053.6834266-CDS-L-elsbetiae_contig995:12415..12480Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig995 12416..12480 -
1691684012.14087-CDS-L-elsbetiae_contig995:12415..124801691684012.14087-CDS-L-elsbetiae_contig995:12415..12480Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig995 12416..12480 -
1622817053.6953473-CDS-L-elsbetiae_contig995:12721..130691622817053.6953473-CDS-L-elsbetiae_contig995:12721..13069Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig995 12722..13069 -
1691684012.1517487-CDS-L-elsbetiae_contig995:12721..130691691684012.1517487-CDS-L-elsbetiae_contig995:12721..13069Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig995 12722..13069 -
1622817053.7095191-CDS-L-elsbetiae_contig995:13486..138281622817053.7095191-CDS-L-elsbetiae_contig995:13486..13828Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig995 13487..13828 -
1691684012.1625829-CDS-L-elsbetiae_contig995:13486..138281691684012.1625829-CDS-L-elsbetiae_contig995:13486..13828Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig995 13487..13828 -
1622817053.7208207-CDS-L-elsbetiae_contig995:14287..155031622817053.7208207-CDS-L-elsbetiae_contig995:14287..15503Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig995 14288..15503 -
1691684012.1775017-CDS-L-elsbetiae_contig995:14287..155031691684012.1775017-CDS-L-elsbetiae_contig995:14287..15503Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig995 14288..15503 -
1622817053.7313104-CDS-L-elsbetiae_contig995:15789..161211622817053.7313104-CDS-L-elsbetiae_contig995:15789..16121Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig995 15790..16121 -
1691684012.188632-CDS-L-elsbetiae_contig995:15789..161211691684012.188632-CDS-L-elsbetiae_contig995:15789..16121Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig995 15790..16121 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig995.18878.1

>prot_L-elsbetiae_contig995.18878.1 ID=prot_L-elsbetiae_contig995.18878.1|Name=mRNA_L-elsbetiae_contig995.18878.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=890bp
WDTSNATDHAPSVTVFTNIAGAVAVTVDRDSSAGAGRQLSSKPLPESIFN
PFQECQSRRQEPATPKRRRSTGQDVVAAENPHVASAAAAALAVEGIKKGV
RDALDRWALQTSRRESMVLWRHECSRYASSSRIGYHPNHPSANHPSSRPS
SAATILRPFSAGRVPEQQQQQQQQQQQQRASSALPRRSIPLQEGGADSRA
GWDTHTTGEESGLPLARASGGGVRGISRNRPSTATPRLAADDADELVAGP
HPERGFSASGARAVDGCVTNDGTTGGRGMRATSARLRSPMDPNTNLAIEG
EGEEGDEFLEEIYEDLDDEDDGELDNRISIMESRFSTAGRERPDPAVGDG
ATGGSDLVGVTRQRQRRSGPQQAAVSATPRSATSQRPPRAPLQQERRLSA
ESRTNRRLTISSARANGGAARTEAGDGTHGTQQRYPAYPPTAIHDARPPR
AIRSRPTSAPVAFHQDQGGGRGVNDPMAPLYARWRRLQMSAGAESGDGRA
AGVGNGQQQRMRPVRDVATAVPSWDGGVGNYRPLSSATEEAPGTIATAGR
GVEDGAAEQQRSSGSVSTPTSSRPSSAAFRSWIKARPSARSAVSAVSSAR
TLGMDDPELVHLQLEMESRRGGLSEAALAKMEDHYTAVVLKNDSQSLQRG
RTAASPRKKGDRGGKSPRKRGPSKGKKGSRTGGSKSKSKSPTKGRKKKGK
KKRGRKLGGAGKRRGGGAGERSAGAGKVYASAGAFMAEHFPPEERQGVSL
LGMEQEEECRHASEVLSRAGVWVSSSALRRALVIPTDRPIETCLAGLPSP
MEGLRDAPYPTPAPPKPFAVRRRHEPLSPSPRMSRGRAGVTAGTTALSLR
KAGGARKRSPTPGRRGARGRGKSPAGGERARKKTGVRGR*
back to top

mRNA from alignment at L-elsbetiae_contig995:11584..16121-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig995.18878.1 ID=mRNA_L-elsbetiae_contig995.18878.1|Name=mRNA_L-elsbetiae_contig995.18878.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4538bp|location=Sequence derived from alignment at L-elsbetiae_contig995:11584..16121- (Laminarionema elsbetiae ELsaHSoW15)
TGGGATACGAGCAACGCCACAGATCATGCGCCATCCGTCACCGTTTTCAC
CAATATCGCGGGAGCCGTCGCCGTAACAGTTGATCGGGACAGCAGTGCTG
GTGCTGGACGCCAGTTGAGCTCGAAGCCATTACCGGAGAGTATATTCAAC
CCCTTCCAAGAGTGCCAAAGTAGGCGGCAAGAGCCCGCAACACCCAAGCG
AAGGCGAAGCACCGGACAAGATGTGGTTGCGGCAGAAAACCCACACGTCG
CTTCTGCGGCGGCAGCAGCTCTTGCTGTGGAGGGAATCAAGAAAGGAGTG
CGTGACGCACTGGACCGATGGGCTTTACAAACGTGAGACCGGCGTTGCGT
TGGCCATGAATCACTCTCTAAGATATTACTGCTGCTTACCGTAGTACCCA
TAGTCTCCATGTTCTTTGGTTGTGGAGACGCTATACGTATGAATACGGAC
GCGGGAGGAGGGAAACATGTGCAGTACCAAACCCAATATGTACCAGACAT
TCTACTTCCACGCTTATTTCTCCATTTCGATAAGCGCCGTTGCGTGTACG
CCTCTCCCTCCCATCATCGCCATCTTCGCATGCGCAACTCTGGCCACCCT
CCCCCCCTTCCTTTGCAGCTCAAGACGCGAATCTATGGTGCTGTGGAGGC
ATGAGTGCTCGCGCTACGCCTCGTCGTCCCGCATTGGCTACCACCCTAAC
CACCCTAGCGCCAACCACCCGAGTTCTCGGCCGTCTTCGGCCGCGACCAT
CCTTCGGCCGTTTTCTGCTGGGCGTGTACCGGAGCAGCAGCAGCAACAGC
AGCAGCAACAGCAACAGCAGCGCGCTTCTTCGGCGCTCCCAAGGCGATCA
ATACCCCTACAAGAAGGAGGGGCAGACAGCAGAGCAGGTTGGGATACGCA
TACTACAGGCGAAGAGAGCGGATTGCCTTTGGCTAGGGCATCGGGAGGGG
GGGTGCGCGGGATCAGCCGCAACAGGCCTAGCACCGCCACCCCACGGCTC
GCGGCTGACGATGCTGATGAGCTAGTAGCAGGTCCGCATCCGGAGAGAGG
CTTCAGCGCCTCTGGTGCTAGGGCTGTAGATGGCTGTGTCACAAACGACG
GCACCACCGGAGGACGAGGAATGAGAGCCACGTCGGCGCGTTTGCGGTCG
CCAATGGACCCCAACACGAATCTCGCTATTGAAGGAGAAGGAGAAGAAGG
AGACGAGTTCCTAGAAGAGATCTACGAAGATCTCGACGACGAGGATGACG
GCGAACTAGACAACCGGATATCGATCATGGAAAGCCGTTTTTCGACAGCA
GGTCGGGAGCGGCCCGACCCCGCTGTTGGTGACGGCGCCACCGGTGGTAG
CGACCTAGTTGGTGTCACCCGCCAACGACAACGGCGATCGGGCCCACAGC
AAGCGGCAGTCTCTGCTACACCCCGCTCGGCGACGTCACAACGCCCGCCT
CGTGCGCCACTTCAGCAGGAAAGGCGGTTGTCCGCCGAGTCGCGGACAAA
TCGCCGCCTAACCATCTCTTCGGCTAGAGCGAACGGTGGGGCGGCCAGGA
CGGAGGCGGGGGACGGCACTCATGGAACGCAGCAACGATACCCCGCCTAC
CCCCCGACCGCGATCCACGATGCGCGGCCGCCTCGAGCTATCAGGAGCAG
ACCTACGTCGGCACCTGTGGCCTTTCACCAGGATCAAGGAGGCGGGCGCG
GCGTCAACGACCCCATGGCCCCTCTATATGCTCGATGGAGAAGGCTGCAG
ATGTCAGCTGGTGCTGAGAGTGGAGACGGAAGAGCGGCGGGGGTTGGTAA
CGGACAGCAGCAGCGAATGCGGCCCGTCCGAGATGTGCGTGGGTCGTGCT
GAGCAGCAAGCAGCCTTTCAAATGTACTACTTCGTATAAGTACGTACCTC
ACTCAGCACAAAAAGGGCGACCGCTAGAAATTTACTGGAGCGTCTCATTG
CCGGTCCAGTTTCTACTAAACGCCAGCTTTATGCGCTTAGCGTGATGGTA
CAAACGTGTCTGAGATTGATCTCAGCAAGTGTCAAAGGCCGTTTCGGGGG
GGCTCCTGAGCGGATTTTTCCGCACAGAAAAAACAAAGATCATATTCTCT
GATATCACCCGTGTGCTTGAATAAGTGCATGCAATGTGCGTTCGAGGGAG
CCATGCGACAAGGAACATTGCGCGACGTTGCCACGCAACCTCAGCTTTCC
TTCCCCCCTCCTGTCCCGCCCGCTCTCTAACTCTCGATCGCTACCCCTCT
GCCCTTTTTCACTTCTTATTTCGCGGGGCTCGGCTGAGAACAGGTGGCCA
CGGCCGTACCGTCCTGGGACGGGGGCGTTGGCAACTACCGTCCCCTGTCG
AGCGCCACCGAGGAAGCCCCGGGGACCATCGCCACCGCCGGTCGCGGCGT
CGAAGACGGAGCGGCAGAGCAGCAGAGGTCAAGCGGCTCTGTCTCCACCC
CTACCAGCAGCCGACCATCCTCGGCGGCGTTCCGGAGCTGGATCAAGGCG
CGGCCGAGCGCAAGGTCCGCGGTCTCGGCCGTTTCCTCGGCGCGAACGCT
GGGGATGGACGATCCCGAGCTGGTCCACCTGCAGCTCGAGATGGAGAGCC
GGCGAGGGGGCTTGTCAGAAGCTGCGCTTGCTAAGGTGGGGGGGGGGGGA
TCCGGTTGGATGGCGCACAGCGTCGATTTGAGTTTTGCTCGATTTGGAGC
TTTGCTCAGTATGTAGACTACCTCTTGCCTCTCCGCGGTTTAGTAGCGAG
CACAGGCTTTGTCGGGGGCTTATTGATCTGTCTGAGTGCTGCATGAACGC
CGTCTTCACCTCGGGTCACAATCGACAAAACCAGCGCATTCTTTGTCCAT
CCTGCGTTCGAAGTCTCTGCCTGCCTCCGCCTCTGCTTCTGACACGACAC
CCCGCCTTGTACGTTCCTACCTTCCAATTATTCTCGCCCCTGGCTTGCTC
ACGAACGGGCATCCGAACAAATGAACGAACGAACACACTCATGCACGTTC
GCATCGCTCTGCATCGCTTTGTTTCGGGGGCACCTCCCACTCACATGTTC
AGATGGAGGACCACTACACCGCCGTCGTTCTCAAGAACGACAGCCAAAGT
CTGCAGCGGGGCAGGACGGCGGCGTCGCCACGAAAAAAGGGTGACCGTGG
TGGTAAAAGCCCTCGCAAACGAGGCCCGTCGAAAGGGAAAAAAGGGTCGC
GCACGGGGGGCAGCAAGAGCAAGAGCAAGAGCCCAACCAAGGGGCGAAAA
AAGAAGGGAAAGAAGAAGCGCGGTCGCAAGCTTGGGGGTGCGGGCAAGCG
GCGTGGCGGCGGCGCTGGAGAGCGGTCGGCGGGAGCCGGGAAGGTGTACG
CGTCTGCGGGGGCATTTATGGCAGAGCATTTCCCCCCGGAAGAACGGCAG
GTGCGAAGGAAAATCTTGGGCGAAAGGTGGAACATATATTGGGAGTGGTT
CCAGTCCTCGGGATACCGCTGCGCGGCCTCGTTGAACGGGGCTCGAAGTA
GAGAAGAGAGGGGGCGGAGGCAGTCTAGGTTTTCCGCATGACGAGCCTTT
CGTTTTGAAGAGATGCCGAAATCGAAAAGGAGTACTCCTTTCGATTTTGT
TCGATCGCGTTTGACCCGTCCGAACGTTACTGTTTGCGGAGGGCGTGAGC
CTGCTGGGGATGGAGCAGGAGGAGGAATGCCGGCACGCGTCCGAGGTCCT
CTCCAGGTGAGAAGTTACTACTACAGCAGTTGACACGCGCGGTGCGACGG
ACGGTGGTGGTGGTGGTTCGGTAGGTTCGGTTGGCTCGAGGCCGAGACGA
CTGGCCGTTTTGTGTGTGTATATACCAAAACACTAAACCTCGACAAAATC
CGTCCGTTCTCGGCGCTTGCGGTACCACCGCGTGGGATAGTTTCGAGGTC
GCTCGTACTCGCCGCGGGTCGAATGAGCACCATAAGTAATGGAATAAACA
TGTGTACGTAGATATAGACTAAAGTGTATATCACGACTTTCAAGCACATC
GAAGATAGTTCTACTTCTAGTATTTTTACACCCACAGCGTTTGATCAAAA
CTCGCCAGGTAACACTACTGTCTGTCCTTCGTCGACACATTAAAGCAGCA
GTAAGGTACACGCCCCTATCCCACACTCCATCCCCCCCCCCCCCCCCTTT
CTCCGTCCTCGAATAACGAAGGGCTGGCGTGTGGGTCTCCAGCTCGGCGC
TACGCCGTGCTCTCGTGATCCCCACCGACCGGCCTATCGAGACCTGCCTG
GCCGGCCTCCCTTCCCCCATGGAGGGGCTGCGCGACGCTCCCTACCCGAC
GCCGGCGCCGCCCAAGCCTTTCGCCGTACGCCGGCGACACGAACCGTTGT
CGCCGTCCCCGCGGATGAGCCGCGGCAGGGCGGGAGTGACGGCGGGGACG
ACGGCGCTCAGCTTGCGCAAGGCAGGAGGGGCACGGAAGAGGTCTCCAAC
CCCGGGGCGGAGAGGGGCTCGAGGGCGAGGGAAGTCCCCCGCTGGCGGGG
AGCGAGCGAGAAAGAAAACTGGGGTTCGGGGGCGATGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig995:11584..16121-

>mRNA_L-elsbetiae_contig995.18878.1 ID=mRNA_L-elsbetiae_contig995.18878.1|Name=mRNA_L-elsbetiae_contig995.18878.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5340bp|location=Sequence derived from alignment at L-elsbetiae_contig995:11584..16121- (Laminarionema elsbetiae ELsaHSoW15)
TGGGATACGAGCAACGCCACAGATCATGCGCCATCCGTCACCGTTTTCAC
CAATATCGCGGGAGCCGTCGCCGTAACAGTTGATCGGGACAGCAGTGCTG
GTGCTGGACGCCAGTTGAGCTCGAAGCCATTACCGGAGAGTATATTCAAC
CCCTTCCAAGAGTGCCAAAGTAGGCGGCAAGAGCCCGCAACACCCAAGCG
AAGGCGAAGCACCGGACAAGATGTGGTTGCGGCAGAAAACCCACACGTCG
CTTCTGCGGCGGCAGCAGCTCTTGCTGTGGAGGGAATCAAGAAAGGAGTG
CGTGACGCACTGGACCGATGGGCTTTACAAACTGGGATACGAGCAACGCC
ACAGATCATGCGCCATCCGTCACCGTTTTCACCAATATCGCGGGAGCCGT
CGCCGTAACAGTTGATCGGGACAGCAGTGCTGGTGCTGGACGCCAGTTGA
GCTCGAAGCCATTACCGGAGAGTATATTCAACCCCTTCCAAGAGTGCCAA
AGTAGGCGGCAAGAGCCCGCAACACCCAAGCGAAGGCGAAGCACCGGACA
AGATGTGGTTGCGGCAGAAAACCCACACGTCGCTTCTGCGGCGGCAGCAG
CTCTTGCTGTGGAGGGAATCAAGAAAGGAGTGCGTGACGCACTGGACCGA
TGGGCTTTACAAACCTCAAGACGCGAATCTATGGTGCTGTGGAGGCATGA
GTGCTCGCGCTACGCCTCGTCGTCCCGCATTGGCTACCACCCTAACCACC
CTAGCGCCAACCACCCGAGTTCTCGGCCGTCTTCGGCCGCGACCATCCTT
CGGCCGTTTTCTGCTGGGCGTGTACCGGAGCAGCAGCAGCAACAGCAGCA
GCAACAGCAACAGCAGCGCGCTTCTTCGGCGCTCCCAAGGCGATCAATAC
CCCTACAAGAAGGAGGGGCAGACAGCAGAGCAGGTTGGGATACGCATACT
ACAGGCGAAGAGAGCGGATTGCCTTTGGCTAGGGCATCGGGAGGGGGGGT
GCGCGGGATCAGCCGCAACAGGCCTAGCACCGCCACCCCACGGCTCGCGG
CTGACGATGCTGATGAGCTAGTAGCAGGTCCGCATCCGGAGAGAGGCTTC
AGCGCCTCTGGTGCTAGGGCTGTAGATGGCTGTGTCACAAACGACGGCAC
CACCGGAGGACGAGGAATGAGAGCCACGTCGGCGCGTTTGCGGTCGCCAA
TGGACCCCAACACGAATCTCGCTATTGAAGGAGAAGGAGAAGAAGGAGAC
GAGTTCCTAGAAGAGATCTACGAAGATCTCGACGACGAGGATGACGGCGA
ACTAGACAACCGGATATCGATCATGGAAAGCCGTTTTTCGACAGCAGGTC
GGGAGCGGCCCGACCCCGCTGTTGGTGACGGCGCCACCGGTGGTAGCGAC
CTAGTTGGTGTCACCCGCCAACGACAACGGCGATCGGGCCCACAGCAAGC
GGCAGTCTCTGCTACACCCCGCTCGGCGACGTCACAACGCCCGCCTCGTG
CGCCACTTCAGCAGGAAAGGCGGTTGTCCGCCGAGTCGCGGACAAATCGC
CGCCTAACCATCTCTTCGGCTAGAGCGAACGGTGGGGCGGCCAGGACGGA
GGCGGGGGACGGCACTCATGGAACGCAGCAACGATACCCCGCCTACCCCC
CGACCGCGATCCACGATGCGCGGCCGCCTCGAGCTATCAGGAGCAGACCT
ACGTCGGCACCTGTGGCCTTTCACCAGGATCAAGGAGGCGGGCGCGGCGT
CAACGACCCCATGGCCCCTCTATATGCTCGATGGAGAAGGCTGCAGATGT
CAGCTGGTGCTGAGAGTGGAGACGGAAGAGCGGCGGGGGTTGGTAACGGA
CAGCAGCAGCGAATGCGGCCCGTCCGAGATCTCAAGACGCGAATCTATGG
TGCTGTGGAGGCATGAGTGCTCGCGCTACGCCTCGTCGTCCCGCATTGGC
TACCACCCTAACCACCCTAGCGCCAACCACCCGAGTTCTCGGCCGTCTTC
GGCCGCGACCATCCTTCGGCCGTTTTCTGCTGGGCGTGTACCGGAGCAGC
AGCAGCAACAGCAGCAGCAACAGCAACAGCAGCGCGCTTCTTCGGCGCTC
CCAAGGCGATCAATACCCCTACAAGAAGGAGGGGCAGACAGCAGAGCAGG
TTGGGATACGCATACTACAGGCGAAGAGAGCGGATTGCCTTTGGCTAGGG
CATCGGGAGGGGGGGTGCGCGGGATCAGCCGCAACAGGCCTAGCACCGCC
ACCCCACGGCTCGCGGCTGACGATGCTGATGAGCTAGTAGCAGGTCCGCA
TCCGGAGAGAGGCTTCAGCGCCTCTGGTGCTAGGGCTGTAGATGGCTGTG
TCACAAACGACGGCACCACCGGAGGACGAGGAATGAGAGCCACGTCGGCG
CGTTTGCGGTCGCCAATGGACCCCAACACGAATCTCGCTATTGAAGGAGA
AGGAGAAGAAGGAGACGAGTTCCTAGAAGAGATCTACGAAGATCTCGACG
ACGAGGATGACGGCGAACTAGACAACCGGATATCGATCATGGAAAGCCGT
TTTTCGACAGCAGGTCGGGAGCGGCCCGACCCCGCTGTTGGTGACGGCGC
CACCGGTGGTAGCGACCTAGTTGGTGTCACCCGCCAACGACAACGGCGAT
CGGGCCCACAGCAAGCGGCAGTCTCTGCTACACCCCGCTCGGCGACGTCA
CAACGCCCGCCTCGTGCGCCACTTCAGCAGGAAAGGCGGTTGTCCGCCGA
GTCGCGGACAAATCGCCGCCTAACCATCTCTTCGGCTAGAGCGAACGGTG
GGGCGGCCAGGACGGAGGCGGGGGACGGCACTCATGGAACGCAGCAACGA
TACCCCGCCTACCCCCCGACCGCGATCCACGATGCGCGGCCGCCTCGAGC
TATCAGGAGCAGACCTACGTCGGCACCTGTGGCCTTTCACCAGGATCAAG
GAGGCGGGCGCGGCGTCAACGACCCCATGGCCCCTCTATATGCTCGATGG
AGAAGGCTGCAGATGTCAGCTGGTGCTGAGAGTGGAGACGGAAGAGCGGC
GGGGGTTGGTAACGGACAGCAGCAGCGAATGCGGCCCGTCCGAGATGTGG
CCACGGCCGTACCGTCCTGGGACGGGGGCGTTGGCAACTACCGTCCCCTG
TCGAGCGCCACCGAGGAAGCCCCGGGGACCATCGCCACCGCCGGTCGCGG
CGTCGAAGACGGAGCGGCAGAGCAGCAGAGGTCAAGCGGCTCTGTCTCCA
CCCCTACCAGCAGCCGACCATCCTCGGCGGCGTTCCGGAGCTGGATCAAG
GCGCGGCCGAGCGCAAGGTCCGCGGTCTCGGCCGTTTCCTCGGCGCGAAC
GCTGGGGATGGACGATCCCGAGCTGGTCCACCTGCAGCTCGAGATGGAGA
GCCGGCGAGGGGGCTTGTCAGAAGCTGCGCTTGCTAAGGTGGCCACGGCC
GTACCGTCCTGGGACGGGGGCGTTGGCAACTACCGTCCCCTGTCGAGCGC
CACCGAGGAAGCCCCGGGGACCATCGCCACCGCCGGTCGCGGCGTCGAAG
ACGGAGCGGCAGAGCAGCAGAGGTCAAGCGGCTCTGTCTCCACCCCTACC
AGCAGCCGACCATCCTCGGCGGCGTTCCGGAGCTGGATCAAGGCGCGGCC
GAGCGCAAGGTCCGCGGTCTCGGCCGTTTCCTCGGCGCGAACGCTGGGGA
TGGACGATCCCGAGCTGGTCCACCTGCAGCTCGAGATGGAGAGCCGGCGA
GGGGGCTTGTCAGAAGCTGCGCTTGCTAAGATGGAGGACCACTACACCGC
CGTCGTTCTCAAGAACGACAGCCAAAGTCTGCAGCGGGGCAGGACGGCGG
CGTCGCCACGAAAAAAGGGTGACCGTGGTGGTAAAAGCCCTCGCAAACGA
GGCCCGTCGAAAGGGAAAAAAGGGTCGCGCACGGGGGGCAGCAAGAGCAA
GAGCAAGAGCCCAACCAAGGGGCGAAAAAAGAAGGGAAAGAAGAAGCGCG
GTCGCAAGCTTGGGGGTGCGGGCAAGCGGCGTGGCGGCGGCGCTGGAGAG
CGGTCGGCGGGAGCCGGGAAGGTGTACGCGTCTGCGGGGGCATTTATGGC
AGAGCATTTCCCCCCGGAAGAACGGCAGATGGAGGACCACTACACCGCCG
TCGTTCTCAAGAACGACAGCCAAAGTCTGCAGCGGGGCAGGACGGCGGCG
TCGCCACGAAAAAAGGGTGACCGTGGTGGTAAAAGCCCTCGCAAACGAGG
CCCGTCGAAAGGGAAAAAAGGGTCGCGCACGGGGGGCAGCAAGAGCAAGA
GCAAGAGCCCAACCAAGGGGCGAAAAAAGAAGGGAAAGAAGAAGCGCGGT
CGCAAGCTTGGGGGTGCGGGCAAGCGGCGTGGCGGCGGCGCTGGAGAGCG
GTCGGCGGGAGCCGGGAAGGTGTACGCGTCTGCGGGGGCATTTATGGCAG
AGCATTTCCCCCCGGAAGAACGGCAGGGCGTGAGCCTGCTGGGGATGGAG
CAGGAGGAGGAATGCCGGCACGCGTCCGAGGTCCTCTCCAGGGCGTGAGC
CTGCTGGGGATGGAGCAGGAGGAGGAATGCCGGCACGCGTCCGAGGTCCT
CTCCAGGGCTGGCGTGTGGGTCTCCAGCTCGGCGCTACGCCGTGCTCTCG
TGATCCCCACCGACCGGCCTATCGAGACCTGCCTGGCCGGCCTCCCTTCC
CCCATGGAGGGGCTGCGCGACGCTCCCTACCCGACGCCGGCGCCGCCCAA
GCCTTTCGCCGTACGCCGGCGACACGAACCGTTGTCGCCGTCCCCGCGGA
TGAGCCGCGGCAGGGCGGGAGTGACGGCGGGGACGACGGCGCTCAGCTTG
CGCAAGGCAGGAGGGGCACGGAAGAGGTCTCCAACCCCGGGGCGGAGAGG
GGCTCGAGGGCGAGGGAAGTCCCCCGCTGGCGGGGAGCGAGCGAGAAAGA
AAACTGGGGTTCGGGGGCGATGAGGCTGGCGTGTGGGTCTCCAGCTCGGC
GCTACGCCGTGCTCTCGTGATCCCCACCGACCGGCCTATCGAGACCTGCC
TGGCCGGCCTCCCTTCCCCCATGGAGGGGCTGCGCGACGCTCCCTACCCG
ACGCCGGCGCCGCCCAAGCCTTTCGCCGTACGCCGGCGACACGAACCGTT
GTCGCCGTCCCCGCGGATGAGCCGCGGCAGGGCGGGAGTGACGGCGGGGA
CGACGGCGCTCAGCTTGCGCAAGGCAGGAGGGGCACGGAAGAGGTCTCCA
ACCCCGGGGCGGAGAGGGGCTCGAGGGCGAGGGAAGTCCCCCGCTGGCGG
GGAGCGAGCGAGAAAGAAAACTGGGGTTCGGGGGCGATGA
back to top