mRNA_L-elsbetiae_contig9934.18867.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9934.18867.1
Unique NamemRNA_L-elsbetiae_contig9934.18867.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9934.18867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9934contigL-elsbetiae_contig9934:6480..6825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size348
Cds size324
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817052.4014099-UTR-L-elsbetiae_contig9934:6479..65011622817052.4014099-UTR-L-elsbetiae_contig9934:6479..6501Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9934 6480..6501 +
1691684011.2266588-UTR-L-elsbetiae_contig9934:6479..65011691684011.2266588-UTR-L-elsbetiae_contig9934:6479..6501Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9934 6480..6501 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817052.414382-CDS-L-elsbetiae_contig9934:6501..68251622817052.414382-CDS-L-elsbetiae_contig9934:6501..6825Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9934 6502..6825 +
1691684011.236203-CDS-L-elsbetiae_contig9934:6501..68251691684011.236203-CDS-L-elsbetiae_contig9934:6501..6825Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9934 6502..6825 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9934.18867.1prot_L-elsbetiae_contig9934.18867.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9934 6502..6825 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9934.18867.1

>prot_L-elsbetiae_contig9934.18867.1 ID=prot_L-elsbetiae_contig9934.18867.1|Name=mRNA_L-elsbetiae_contig9934.18867.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
MGCALLCAGLGSARLGGGFDWLACSPVYLDVESCNCTYMPYLWGGSCNCF
HAIKKRRKQREDLYVLPPSCVTPRRIRFALYRNRTPKRVVTPHHTTPLPR
RVAHREMG
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mRNA from alignment at L-elsbetiae_contig9934:6480..6825+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9934.18867.1 ID=mRNA_L-elsbetiae_contig9934.18867.1|Name=mRNA_L-elsbetiae_contig9934.18867.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=346bp|location=Sequence derived from alignment at L-elsbetiae_contig9934:6480..6825+ (Laminarionema elsbetiae ELsaHSoW15)
TGATGGTGAGAGAGGTGCAGAGATGGGTTGCGCGCTGCTTTGCGCTGGGC
TTGGCTCGGCTCGGCTTGGCGGGGGTTTTGACTGGCTTGCTTGTAGTCCC
GTGTATCTAGATGTAGAGAGCTGTAATTGTACATACATGCCGTACCTCTG
GGGGGGGAGTTGTAATTGTTTTCACGCAATAAAAAAAAGAAGAAAACAGC
GCGAGGATTTGTACGTATTGCCCCCCTCCTGCGTGACCCCCCGGCGGATA
CGTTTCGCTTTGTACAGAAACCGTACACCGAAACGTGTAGTTACACCACA
CCACACCACACCACTACCGAGGCGCGTGGCACACCGAGAAATGGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9934:6480..6825+

>mRNA_L-elsbetiae_contig9934.18867.1 ID=mRNA_L-elsbetiae_contig9934.18867.1|Name=mRNA_L-elsbetiae_contig9934.18867.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig9934:6480..6825+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTTGCGCGCTGCTTTGCGCTGGGCTTGGCTCGGCTCGGCTTGGCGG
GGGTTTTGACTGGCTTGCTTGTAGTCCCGTGTATCTAGATGTAGAGAGCT
GTAATTGTACATACATGCCGTACCTCTGGGGGGGGAGTTGTAATTGTTTT
CACGCAATAAAAAAAAGAAGAAAACAGCGCGAGGATTTGTACGTATTGCC
CCCCTCCTGCGTGACCCCCCGGCGGATACGTTTCGCTTTGTACAGAAACC
GTACACCGAAACGTGTAGTTACACCACACCACACCACACCACTACCGAGG
CGCGTGGCACACCGAGAAATGGGAATGGGTTGCGCGCTGCTTTGCGCTGG
GCTTGGCTCGGCTCGGCTTGGCGGGGGTTTTGACTGGCTTGCTTGTAGTC
CCGTGTATCTAGATGTAGAGAGCTGTAATTGTACATACATGCCGTACCTC
TGGGGGGGGAGTTGTAATTGTTTTCACGCAATAAAAAAAAGAAGAAAACA
GCGCGAGGATTTGTACGTATTGCCCCCCTCCTGCGTGACCCCCCGGCGGA
TACGTTTCGCTTTGTACAGAAACCGTACACCGAAACGTGTAGTTACACCA
CACCACACCACACCACTACCGAGGCGCGTGGCACACCGAGAAATGGGA
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