mRNA_L-elsbetiae_contig9930.18865.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9930.18865.1
Unique NamemRNA_L-elsbetiae_contig9930.18865.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9930.18865.1 vs. uniprot
Match: D7FIN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIN4_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 1.300e-12
Identity = 68/105 (64.76%), Postives = 73/105 (69.52%), Query Frame = 2 
Query:  410 RVSVSGHMFWERNLRTVSKITSKKKDNSPSGKKDALRRATRKAGXXXXXXXXXXXXXXXXXXXXX--------------EDGRPSVGTWTKAQTYLQILKELSGK 682
            RVS SGHM WERNLRTVSK   KKK  S   KK+AL RA R+ G XXXXXXXXXXXXXXXXXXXX              EDGRPS+GTW   Q YL+ILKE+SGK
Sbjct:  655 RVSASGHMAWERNLRTVSKFQPKKKVTSLPSKKEALHRAMRRGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGEDGRPSIGTWATTQNYLKILKEISGK 759
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BLAST of mRNA_L-elsbetiae_contig9930.18865.1 vs. uniprot
Match: A0A6H5KD39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD39_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 2.890e-11
Identity = 66/101 (65.35%), Postives = 70/101 (69.31%), Query Frame = 2 
Query:  413 VSVSGHMFWERNLRTVSKITSKKKDNSPSGKKDALRRATRKAGXXXXXXXXXXXXXXXXXXXXX-----------EDGRPSVGTWTKAQTYLQILKELSGK 682
            VS SGHM WERNLRTVSK    KK  S   KK+AL RA R  G XXXXXXXXXXXXXXXXXXXX           EDGRPS+GTW   Q YL+ILKE+SGK
Sbjct:  649 VSASGHMAWERNLRTVSKFQPNKKVTSLQRKKEALHRAMRTGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDGRPSIGTWATTQNYLKILKEISGK 749
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9930.18865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIN4_ECTSI1.300e-1264.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KD39_9PHAE2.890e-1165.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9930contigL-elsbetiae_contig9930:6325..7384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue1.5e-12
Seed eggNOG ortholog2880.D7FIN4
Hectar predicted targeting categoryother localisation
EggNOG OGs2C7IG@1,2QWI0@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size1060
Cds size519
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9930.18865.1prot_L-elsbetiae_contig9930.18865.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9930 6677..7195 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817052.2579896-UTR-L-elsbetiae_contig9930:6324..66761622817052.2579896-UTR-L-elsbetiae_contig9930:6324..6676Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9930 6325..6676 +
1691684011.1323035-UTR-L-elsbetiae_contig9930:6324..66761691684011.1323035-UTR-L-elsbetiae_contig9930:6324..6676Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9930 6325..6676 +
1622817052.2802978-UTR-L-elsbetiae_contig9930:7195..73841622817052.2802978-UTR-L-elsbetiae_contig9930:7195..7384Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9930 7196..7384 +
1691684011.153221-UTR-L-elsbetiae_contig9930:7195..73841691684011.153221-UTR-L-elsbetiae_contig9930:7195..7384Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9930 7196..7384 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817052.269291-CDS-L-elsbetiae_contig9930:6676..71951622817052.269291-CDS-L-elsbetiae_contig9930:6676..7195Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9930 6677..7195 +
1691684011.1437378-CDS-L-elsbetiae_contig9930:6676..71951691684011.1437378-CDS-L-elsbetiae_contig9930:6676..7195Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9930 6677..7195 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9930.18865.1

>prot_L-elsbetiae_contig9930.18865.1 ID=prot_L-elsbetiae_contig9930.18865.1|Name=mRNA_L-elsbetiae_contig9930.18865.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=173bp
MVWPSTYSKNVAHEIVFGGRVSVSGHMFWERNLRTVSKITSKKKDNSPSG
KKDALRRATRKAGNGGGGGGRGGGGGGGGEGGGGEDGRPSVGTWTKAQTY
LQILKELSGKVGFAFEASCQPLACLWKRGVPKKLPGGASACLSLSRNDNR
GNDDAYLSQMSKCRMCVSRVVP*
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mRNA from alignment at L-elsbetiae_contig9930:6325..7384+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9930.18865.1 ID=mRNA_L-elsbetiae_contig9930.18865.1|Name=mRNA_L-elsbetiae_contig9930.18865.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1060bp|location=Sequence derived from alignment at L-elsbetiae_contig9930:6325..7384+ (Laminarionema elsbetiae ELsaHSoW15)
GCCTGCTAGAAGGGTTTCGGGGCGATACCGTATTGTTTTATGGTAGGGCC
TTCGCCCATTGCTGTAGATGTCGCCCCCCCTGGCTTTTCGTCACGCTCCC
CGACCTTTTGCAACTCGCCGAATAGAATGAGACGTCTCACGGTGGTTCGC
AGAACGTTTTTTTCGAGCCTCCCTCTTGTGACGGAACCCGTTGAGCGTGC
AGCCTCCGTTTGTACCGATAAAAGAACGGTCTGCTGTCCAACGAGCATAT
CAACCCGCCCCCGACCATCTTTCCCTGTGCGTGTGGAATTGACAGAGAGC
CGCACATTGTCATGCTCTCGCTTTTCTCTCCCAATTTCATTATTTGAAGT
CTATGGTCTGGCCATCAACATATTCTAAAAATGTAGCCCATGAAATTGTT
TTTGGTGGCAGGGTCTCTGTGTCTGGCCACATGTTTTGGGAGCGCAACCT
CAGGACAGTGTCCAAGATTACGTCCAAAAAAAAGGACAACTCTCCCTCCG
GAAAGAAGGACGCGCTCAGGCGGGCCACGCGCAAGGCCGGAAACGGTGGA
GGCGGCGGCGGCCGGGGCGGTGGCGGTGGCGGTGGCGGCGAAGGTGGGGG
AGGAGAGGATGGTCGACCGTCTGTCGGCACGTGGACCAAGGCACAGACAT
ACCTGCAGATTCTGAAGGAGCTGAGCGGCAAGGTGGGGTTTGCTTTTGAG
GCATCGTGTCAGCCTTTAGCCTGCTTGTGGAAGCGCGGTGTACCGAAGAA
GCTGCCTGGCGGCGCATCTGCTTGTCTGTCCTTAAGTCGCAATGACAATC
GTGGTAATGATGATGCTTACCTATCTCAAATGTCGAAGTGTCGGATGTGT
GTATCGCGCGTTGTGCCATGACGGCTTGCCTGCTTTTGTGTTGGGAATCC
GCAATGCTCCATTCCCAACTGACGGCATGCATTCTGCTGCATTCTAACTC
TTTGCGGGGACATGCGTCAAATTTGGTCACAGGATGACGAAGAGCTGCAG
TGGCTTGCGGTGGCAAAGCAAGGAAAGGGTGTCCAGAAGAGCGAGAAGCG
GCAGGAAAAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9930:6325..7384+

>mRNA_L-elsbetiae_contig9930.18865.1 ID=mRNA_L-elsbetiae_contig9930.18865.1|Name=mRNA_L-elsbetiae_contig9930.18865.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1038bp|location=Sequence derived from alignment at L-elsbetiae_contig9930:6325..7384+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCTGGCCATCAACATATTCTAAAAATGTAGCCCATGAAATTGTTTT
TGGTGGCAGGGTCTCTGTGTCTGGCCACATGTTTTGGGAGCGCAACCTCA
GGACAGTGTCCAAGATTACGTCCAAAAAAAAGGACAACTCTCCCTCCGGA
AAGAAGGACGCGCTCAGGCGGGCCACGCGCAAGGCCGGAAACGGTGGAGG
CGGCGGCGGCCGGGGCGGTGGCGGTGGCGGTGGCGGCGAAGGTGGGGGAG
GAGAGGATGGTCGACCGTCTGTCGGCACGTGGACCAAGGCACAGACATAC
CTGCAGATTCTGAAGGAGCTGAGCGGCAAGGTGGGGTTTGCTTTTGAGGC
ATCGTGTCAGCCTTTAGCCTGCTTGTGGAAGCGCGGTGTACCGAAGAAGC
TGCCTGGCGGCGCATCTGCTTGTCTGTCCTTAAGTCGCAATGACAATCGT
GGTAATGATGATGCTTACCTATCTCAAATGTCGAAGTGTCGGATGTGTGT
ATCGCGCGTTGTGCCATGAATGGTCTGGCCATCAACATATTCTAAAAATG
TAGCCCATGAAATTGTTTTTGGTGGCAGGGTCTCTGTGTCTGGCCACATG
TTTTGGGAGCGCAACCTCAGGACAGTGTCCAAGATTACGTCCAAAAAAAA
GGACAACTCTCCCTCCGGAAAGAAGGACGCGCTCAGGCGGGCCACGCGCA
AGGCCGGAAACGGTGGAGGCGGCGGCGGCCGGGGCGGTGGCGGTGGCGGT
GGCGGCGAAGGTGGGGGAGGAGAGGATGGTCGACCGTCTGTCGGCACGTG
GACCAAGGCACAGACATACCTGCAGATTCTGAAGGAGCTGAGCGGCAAGG
TGGGGTTTGCTTTTGAGGCATCGTGTCAGCCTTTAGCCTGCTTGTGGAAG
CGCGGTGTACCGAAGAAGCTGCCTGGCGGCGCATCTGCTTGTCTGTCCTT
AAGTCGCAATGACAATCGTGGTAATGATGATGCTTACCTATCTCAAATGT
CGAAGTGTCGGATGTGTGTATCGCGCGTTGTGCCATGA
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