prot_L-elsbetiae_contig9929.18863.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig9929.18863.1
Unique Nameprot_L-elsbetiae_contig9929.18863.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length272
Homology
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BLAST of mRNA_L-elsbetiae_contig9929.18863.1 vs. uniprot
Match: D8LKN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKN9_ECTSI)

HSP 1 Score: 199 bits (505), Expect = 3.020e-58
Identity = 115/235 (48.94%), Postives = 157/235 (66.81%), Query Frame = 0 
Query:    4 ALYCTAMPLLLMGIADMLELWVDTLPSQLLPADSFAIKVMHLAEEKSVFFWVGRVGSGGLAAFGLSASFLLPGETVIRCVDLMTGAAAACAFVGFNFVGFHLTTVINNAKRQASPSALAFYDCAIHTLRIQVAALSTSAVVWVVSVVSLEPQLGGFGARSPIIPISIMIADAYAGFGLAVHFAKVGPARGAPTSHGAASP----------AASRMHAAKAAISEVGAEVRQSLSL 228
            AL     PL+ M +A M++LW++TLP+QL+PADS AIKV+ LAE+K++  WVG +   GL  FGL   F+L    V+R V+L+         + FNFVG +LT +IN AKR A PS++AFY+ AIHTLRIQV AL+ + VVW+V VV+LEP LGG GAR+P+IP +IM+ DA+ GF LAVHFAK+GP     TS  + +P          AAS    A+A +S+VGA+  + +S+
Sbjct:  128 ALCSITFPLVCMAVAHMIDLWINTLPTQLVPADSVAIKVIKLAEKKNLCLWVGWLAIAGLTPFGLLTFFVLDVIKVVRAVNLV---------ICFNFVGVNLTKIINGAKRNAGPSSIAFYEQAIHTLRIQVFALTVAGVVWIVMVVALEPYLGGVGARTPVIPFTIMLLDAFVGFSLAVHFAKIGP-----TSRQSFNPLNQLGTQMNSAASPWGGARAILSDVGAKASEVMSM 348
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9929.18863.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKN9_ECTSI3.020e-5848.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 74..84
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..50
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 106..271
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..18
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 85..105
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 51..73
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.615
NoneNo IPR availableTMHMMTMhelixcoord: 53..75
NoneNo IPR availableTMHMMTMhelixcoord: 130..152
NoneNo IPR availableTMHMMTMhelixcoord: 2..24
NoneNo IPR availableTMHMMTMhelixcoord: 88..110
NoneNo IPR availableTMHMMTMhelixcoord: 164..186

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9929contigL-elsbetiae_contig9929:295..3590 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9929.18863.1mRNA_L-elsbetiae_contig9929.18863.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig9929 83..3662 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig9929.18863.1 ID=prot_L-elsbetiae_contig9929.18863.1|Name=mRNA_L-elsbetiae_contig9929.18863.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=272bp
MLLALYCTAMPLLLMGIADMLELWVDTLPSQLLPADSFAIKVMHLAEEKS
VFFWVGRVGSGGLAAFGLSASFLLPGETVIRCVDLMTGAAAACAFVGFNF
VGFHLTTVINNAKRQASPSALAFYDCAIHTLRIQVAALSTSAVVWVVSVV
SLEPQLGGFGARSPIIPISIMIADAYAGFGLAVHFAKVGPARGAPTSHGA
ASPAASRMHAAKAAISEVGAEVRQSLSLSLFTGKTATITHMTVKPAPPAA
SSSAPGGKRVVPTMEDIESVE*
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