mRNA_L-elsbetiae_contig9891.18831.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9891.18831.1
Unique NamemRNA_L-elsbetiae_contig9891.18831.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9891.18831.1 vs. uniprot
Match: A0A6H5KU49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU49_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.840e-24
Identity = 174/387 (44.96%), Postives = 195/387 (50.39%), Query Frame = -1 
Query:    1 AITDRAQFPPLLLRGASADRGPGLFLAPPITMVKTG-----AQQ--------AAERPGAEAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSRIGWWLRWATIASGTG--GAAADASNGDGXXXXXXXGLESLETSAGADGWQVVSVSAPGAPPSXXXXXXXXXXXXXXXATVIGKPEDEEDEDEEGSWCDFAVEEEGADDGVGVGDRGGAPVPLAVRDGDGGAGGRGAVAPAVTIEDALRRAAGGTIYESHDDGSXXXXXXXXXXXXXXXXEDENSTVHGAANECTEDHHGGVFPPRVVSPNAPRSFRDTLMAPSATGAVGFSESKALLRARAAAAAAAPWGLSSSGPALVDGGADGGAVFLWRKAAAGE 1116
            A    AQFPPL+LR ASA++GPGL+LAPPITMVK       A+Q        AA   G   +     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   +SRIGWWLRWAT  SG G    AA+A+ GDG           LET +GADGW+VV  SAP     XXXXXXXXXXXXXXX       +D+       SW DFA EE+ AD   G                DGG                                                  D+++T                  P+ VSPN PRSFRDTLMA    GA GFS+ KA  R+RAA               LVDGG  GGAVFLWRKAAAG+
Sbjct:  232 AADTNAQFPPLVLRDASAEKGPGLYLAPPITMVKKNSPGHPAEQLATSHEAAAAGTQGCAVSCSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGAVSRIGWWLRWATSGSGEGQVSPAAEAARGDG-----------LETRSGADGWEVVVSSAPXXXXXXXXXXXXXXXXXXXXXXXXXXXKDDV-----ASWSDFAGEEDKADTRFGK---------------DGG--------------------------------------------------DDDATAAA---------------PQSVSPNVPRSFRDTLMA---GGAAGFSDPKAFSRSRAAXXXXXXXXXXXXXXXLVDGGEQGGAVFLWRKAAAGQ 519
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9891.18831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KU49_9PHAE1.840e-2444.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9891contigL-elsbetiae_contig9891:95..1451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1358
Cds size1356
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817049.0531726-CDS-L-elsbetiae_contig9891:94..14501622817049.0531726-CDS-L-elsbetiae_contig9891:94..1450Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9891 95..1450 +
1691684008.7924488-CDS-L-elsbetiae_contig9891:94..14501691684008.7924488-CDS-L-elsbetiae_contig9891:94..1450Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9891 95..1450 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9891.18831.1prot_L-elsbetiae_contig9891.18831.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9891 95..1450 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9891.18831.1

>prot_L-elsbetiae_contig9891.18831.1 ID=prot_L-elsbetiae_contig9891.18831.1|Name=mRNA_L-elsbetiae_contig9891.18831.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=452bp
LPGRCLPPQENRSPVGPTVHKSRARGRQPPRRRRRCRRSRPQQRLRFGEP
HRPRGARGHQRVPERSRGVRGDNPRGKDAAVVVLCALVGGAVHGAVLVFA
CFVVVVVVVVLAGEAAAVVVALVDRAPGGPPEGILDRDGGRHRPSSAGAA
VSVANGQRDRGPTPIADADAVVGPLLFHREVAPRTFFVFVFFILGLADDR
RRRSSRRSSSRCCCFSGRRRPGSGNRHHLPAVGPSARLQRLKAAAAGRCA
AVSIRGVGGGAARAARYRRPSQPPADPRHPAATVSGSLGDGRSRRCLRTR
NHAAAAAAAAVGAAALRPHHPSRCRLRARPFRRLLGAGLDHRDGRSEEEA
RPPVGRRSAEQKRGKLSAVGNGDRRRERRAASPLWWAAGVVATTAAAAAA
AAVFYLRASNRSSSGSSSSGVDRGGRRGGRGRRGGRGENRLQRQHDRPPL
PR
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mRNA from alignment at L-elsbetiae_contig9891:95..1451+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9891.18831.1 ID=mRNA_L-elsbetiae_contig9891.18831.1|Name=mRNA_L-elsbetiae_contig9891.18831.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1357bp|location=Sequence derived from alignment at L-elsbetiae_contig9891:95..1451+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCCCGGCCGCTGCCTTCCTCCACAGGAAAACCGCTCCCCCGTCGGCCC
CACCGTCCACAAGAGCCGGGCCCGAGGAAGACAACCCCCAAGGCGCCGCC
GCCGCTGCCGCCGCTCGCGCCCTCAGCAGCGCCTTCGATTCGGAGAACCC
CACCGCCCCCGTGGCGCTCGGGGCCATCAGCGTGTCCCGGAAAGATCGCG
GGGCGTTCGGGGAGACAACCCGCGGGGGAAAGACGCCGCCGTGGTGGTCC
TCTGTGCACTCGTTGGCGGCGCCGTGCACGGTGCTGTTCTCGTCTTCGCG
TGCTTTGTCGTCGTCGTCGTCGTCGTCGTCCTCGCCGGCGAAGCTGCTGC
CGTCGTCGTGGCTCTCGTAGATCGTGCCCCCGGCGGCCCGCCTGAGGGCA
TCCTCGATCGTGACGGCGGGCGCCACCGCCCCTCTTCCGCCGGCGCCGCC
GTCTCCGTCGCGAACGGCCAGCGGGACAGGGGCCCCACCCCTATCGCCGA
CGCCGACGCCGTCGTCGGCCCCCTCCTCTTCCACCGCGAAGTCGCACCAC
GAACCTTCTTCGTCTTCGTCTTCTTCATCCTCGGGCTTGCCGATGACCGT
CGCAGGCGAAGCTCCAGGCGAAGCTCCAGCCGCTGCTGTTGCTTCAGCGG
ACGGCGGCGCCCCGGGAGCGGAAACCGACACCACCTGCCAGCCGTCGGCC
CCAGCGCTCGTCTCCAGCGACTCAAGGCCGCCGCCGCCGGCCGCTGCGCA
GCCGTCTCCATTCGAGGCGTCGGCGGCGGCGCCGCCCGTGCCGCTCGCTA
TCGTCGCCCATCGCAGCCACCAGCCGATCCTCGACATCCCGCCGCCACCG
TCAGCGGCAGCCTCGGCGACGGACGTAGCCGCCGCTGCCTCCGAACAAGA
AACCACGCCGCCGCCGCCGCCGCCGCCGCCGTCGGTGCTGCCGCTCTGCG
TCCTCACCACCCCTCCCGCTGCCGCCTCCGCGCCAGGCCGTTCCGCCGCC
TGCTGGGCGCCGGTCTTGACCATCGTGATGGGCGGAGCGAGGAAGAGGCC
AGGCCCCCTGTCGGCCGACGCTCCGCGGAGCAAAAGCGGGGGAAACTGAG
CGCGGTCGGTAATGGCGATCGCCGGCGAGAGCGGCGAGCAGCTAGCCCCC
TCTGGTGGGCGGCCGGTGTCGTCGCCACCACCGCCGCCGCCGCCGCCGCC
GCCGCAGTCTTTTACTTGCGCGCCAGCAACCGCAGCAGCAGCGGCAGCAG
CAGCAGCGGCGTCGATCGCGGTGGCCGCCGCGGTGGGCGAGGCCGGCGAG
GAGGTCGCGGCGAGAATCGCCTGCAGCGTCAGCACGATCGGCCTCCCCTT
CCTCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9891:95..1451+

>mRNA_L-elsbetiae_contig9891.18831.1 ID=mRNA_L-elsbetiae_contig9891.18831.1|Name=mRNA_L-elsbetiae_contig9891.18831.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2712bp|location=Sequence derived from alignment at L-elsbetiae_contig9891:95..1451+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCCCGGCCGCTGCCTTCCTCCACAGGAAAACCGCTCCCCCGTCGGCCC
CACCGTCCACAAGAGCCGGGCCCGAGGAAGACAACCCCCAAGGCGCCGCC
GCCGCTGCCGCCGCTCGCGCCCTCAGCAGCGCCTTCGATTCGGAGAACCC
CACCGCCCCCGTGGCGCTCGGGGCCATCAGCGTGTCCCGGAAAGATCGCG
GGGCGTTCGGGGAGACAACCCGCGGGGGAAAGACGCCGCCGTGGTGGTCC
TCTGTGCACTCGTTGGCGGCGCCGTGCACGGTGCTGTTCTCGTCTTCGCG
TGCTTTGTCGTCGTCGTCGTCGTCGTCGTCCTCGCCGGCGAAGCTGCTGC
CGTCGTCGTGGCTCTCGTAGATCGTGCCCCCGGCGGCCCGCCTGAGGGCA
TCCTCGATCGTGACGGCGGGCGCCACCGCCCCTCTTCCGCCGGCGCCGCC
GTCTCCGTCGCGAACGGCCAGCGGGACAGGGGCCCCACCCCTATCGCCGA
CGCCGACGCCGTCGTCGGCCCCCTCCTCTTCCACCGCGAAGTCGCACCAC
GAACCTTCTTCGTCTTCGTCTTCTTCATCCTCGGGCTTGCCGATGACCGT
CGCAGGCGAAGCTCCAGGCGAAGCTCCAGCCGCTGCTGTTGCTTCAGCGG
ACGGCGGCGCCCCGGGAGCGGAAACCGACACCACCTGCCAGCCGTCGGCC
CCAGCGCTCGTCTCCAGCGACTCAAGGCCGCCGCCGCCGGCCGCTGCGCA
GCCGTCTCCATTCGAGGCGTCGGCGGCGGCGCCGCCCGTGCCGCTCGCTA
TCGTCGCCCATCGCAGCCACCAGCCGATCCTCGACATCCCGCCGCCACCG
TCAGCGGCAGCCTCGGCGACGGACGTAGCCGCCGCTGCCTCCGAACAAGA
AACCACGCCGCCGCCGCCGCCGCCGCCGCCGTCGGTGCTGCCGCTCTGCG
TCCTCACCACCCCTCCCGCTGCCGCCTCCGCGCCAGGCCGTTCCGCCGCC
TGCTGGGCGCCGGTCTTGACCATCGTGATGGGCGGAGCGAGGAAGAGGCC
AGGCCCCCTGTCGGCCGACGCTCCGCGGAGCAAAAGCGGGGGAAACTGAG
CGCGGTCGGTAATGGCGATCGCCGGCGAGAGCGGCGAGCAGCTAGCCCCC
TCTGGTGGGCGGCCGGTGTCGTCGCCACCACCGCCGCCGCCGCCGCCGCC
GCCGCAGTCTTTTACTTGCGCGCCAGCAACCGCAGCAGCAGCGGCAGCAG
CAGCAGCGGCGTCGATCGCGGTGGCCGCCGCGGTGGGCGAGGCCGGCGAG
GAGGTCGCGGCGAGAATCGCCTGCAGCGTCAGCACGATCGGCCTCCCCTT
CCTCGGCTCCCCGGCCGCTGCCTTCCTCCACAGGAAAACCGCTCCCCCGT
CGGCCCCACCGTCCACAAGAGCCGGGCCCGAGGAAGACAACCCCCAAGGC
GCCGCCGCCGCTGCCGCCGCTCGCGCCCTCAGCAGCGCCTTCGATTCGGA
GAACCCCACCGCCCCCGTGGCGCTCGGGGCCATCAGCGTGTCCCGGAAAG
ATCGCGGGGCGTTCGGGGAGACAACCCGCGGGGGAAAGACGCCGCCGTGG
TGGTCCTCTGTGCACTCGTTGGCGGCGCCGTGCACGGTGCTGTTCTCGTC
TTCGCGTGCTTTGTCGTCGTCGTCGTCGTCGTCGTCCTCGCCGGCGAAGC
TGCTGCCGTCGTCGTGGCTCTCGTAGATCGTGCCCCCGGCGGCCCGCCTG
AGGGCATCCTCGATCGTGACGGCGGGCGCCACCGCCCCTCTTCCGCCGGC
GCCGCCGTCTCCGTCGCGAACGGCCAGCGGGACAGGGGCCCCACCCCTAT
CGCCGACGCCGACGCCGTCGTCGGCCCCCTCCTCTTCCACCGCGAAGTCG
CACCACGAACCTTCTTCGTCTTCGTCTTCTTCATCCTCGGGCTTGCCGAT
GACCGTCGCAGGCGAAGCTCCAGGCGAAGCTCCAGCCGCTGCTGTTGCTT
CAGCGGACGGCGGCGCCCCGGGAGCGGAAACCGACACCACCTGCCAGCCG
TCGGCCCCAGCGCTCGTCTCCAGCGACTCAAGGCCGCCGCCGCCGGCCGC
TGCGCAGCCGTCTCCATTCGAGGCGTCGGCGGCGGCGCCGCCCGTGCCGC
TCGCTATCGTCGCCCATCGCAGCCACCAGCCGATCCTCGACATCCCGCCG
CCACCGTCAGCGGCAGCCTCGGCGACGGACGTAGCCGCCGCTGCCTCCGA
ACAAGAAACCACGCCGCCGCCGCCGCCGCCGCCGCCGTCGGTGCTGCCGC
TCTGCGTCCTCACCACCCCTCCCGCTGCCGCCTCCGCGCCAGGCCGTTCC
GCCGCCTGCTGGGCGCCGGTCTTGACCATCGTGATGGGCGGAGCGAGGAA
GAGGCCAGGCCCCCTGTCGGCCGACGCTCCGCGGAGCAAAAGCGGGGGAA
ACTGAGCGCGGTCGGTAATGGCGATCGCCGGCGAGAGCGGCGAGCAGCTA
GCCCCCTCTGGTGGGCGGCCGGTGTCGTCGCCACCACCGCCGCCGCCGCC
GCCGCCGCCGCAGTCTTTTACTTGCGCGCCAGCAACCGCAGCAGCAGCGG
CAGCAGCAGCAGCGGCGTCGATCGCGGTGGCCGCCGCGGTGGGCGAGGCC
GGCGAGGAGGTCGCGGCGAGAATCGCCTGCAGCGTCAGCACGATCGGCCT
CCCCTTCCTCGG
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