mRNA_L-elsbetiae_contig989.18828.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig989.18828.1
Unique NamemRNA_L-elsbetiae_contig989.18828.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig989.18828.1 vs. uniprot
Match: D8LG05_ECTSI (Glutaredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG05_ECTSI)

HSP 1 Score: 223 bits (569), Expect = 9.420e-70
Identity = 113/122 (92.62%), Postives = 120/122 (98.36%), Query Frame = 1 
Query:  223 MSDDF-DGDSFGAKAMQERTNAELQEMVSSHNILAFIKGNRLMPQCGYSGTLVNILQSLSVPFETVDVLADERIRQGIKDFSNWPTIPQLYLGGEFVGGADIVIEMYQSGELQEMIEVAAAS 585
            MS+DF + DSFGA+AMQERT+AELQEMVSSHNILAFIKGNRLMPQCGYSGTLVNILQSLSVPFETVDVLADERIRQGIKDFSNWPTIPQLYLGGEF+GGADIVIE++QSGELQEMIEVAAAS
Sbjct:    2 MSEDFGEEDSFGARAMQERTHAELQEMVSSHNILAFIKGNRLMPQCGYSGTLVNILQSLSVPFETVDVLADERIRQGIKDFSNWPTIPQLYLGGEFIGGADIVIELFQSGELQEMIEVAAAS 123
[Close]
BLAST of mRNA_L-elsbetiae_contig989.18828.1 vs. uniprot
Match: A0A836CAV6_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAV6_9STRA)

HSP 1 Score: 160 bits (406), Expect = 3.960e-45
Identity = 80/120 (66.67%), Postives = 95/120 (79.17%), Query Frame = 1 
Query:  226 SDDFDGDSFGAKAMQERTNAELQEMVSSHNILAFIKGNRLMPQCGYSGTLVNILQSLSVPFETVDVLADERIRQGIKDFSNWPTIPQLYLGGEFVGGADIVIEMYQSGELQEMIEVAAAS 585
            +DD D   F   A QER  A    +V+ + IL F+KGNR+ PQCGYSGT+V IL  L VP+ETVDV+AD+RIR+G+KDFSNWPTIPQLYL GEFVGGADIVIE+YQ+GEL E IE+AAAS
Sbjct:   20 ADDDDVVDFSGAATQERIAA----LVADNPILVFMKGNRMFPQCGYSGTVVQILNQLGVPYETVDVMADDRIREGVKDFSNWPTIPQLYLNGEFVGGADIVIELYQTGELLEQIEIAAAS 135
[Close]
BLAST of mRNA_L-elsbetiae_contig989.18828.1 vs. uniprot
Match: K8GGZ7_9CYAN (Glutaredoxin n=3 Tax=Cyanobacteria TaxID=1117 RepID=K8GGZ7_9CYAN)

HSP 1 Score: 150 bits (379), Expect = 1.720e-41
Identity = 67/107 (62.62%), Postives = 87/107 (81.31%), Query Frame = 1 
Query:  265 MQERTNAELQEMVSSHNILAFIKGNRLMPQCGYSGTLVNILQSLSVPFETVDVLADERIRQGIKDFSNWPTIPQLYLGGEFVGGADIVIEMYQSGELQEMIEVAAAS 585
            M   T A + E++ S+ I+ F+KGN+LMPQCG+S  +V IL  L VP+ETVDVLAD  IRQGIK++SNWPTIPQ+Y+ GEF+GG+DI+IE+YQ GELQ+M+EVA AS
Sbjct:    1 MTPDTQARIDELIQSNKIMVFMKGNKLMPQCGFSNNVVQILNVLGVPYETVDVLADPEIRQGIKEYSNWPTIPQVYINGEFIGGSDIMIELYQKGELQQMVEVALAS 107
[Close]
BLAST of mRNA_L-elsbetiae_contig989.18828.1 vs. uniprot
Match: A0A8K1ZX57_9CYAN (Grx4 family monothiol glutaredoxin n=1 Tax=Petrachloros mirabilis ULC683 TaxID=2781853 RepID=A0A8K1ZX57_9CYAN)

HSP 1 Score: 150 bits (378), Expect = 2.420e-41
Identity = 64/107 (59.81%), Postives = 86/107 (80.37%), Query Frame = 1 
Query:  265 MQERTNAELQEMVSSHNILAFIKGNRLMPQCGYSGTLVNILQSLSVPFETVDVLADERIRQGIKDFSNWPTIPQLYLGGEFVGGADIVIEMYQSGELQEMIEVAAAS 585
            M    N  + ++V +H IL F+KG++LMPQCG+S T V +  SL VPF+TVDVLAD  IRQGIK++SNWPTIPQ+Y+ GEF+GG+D++IE+YQ GELQ+++EVA AS
Sbjct:    1 MMPELNTRIDQLVQNHKILVFMKGSKLMPQCGFSNTAVQVFNSLGVPFDTVDVLADPEIRQGIKEYSNWPTIPQIYINGEFIGGSDVLIELYQQGELQQLVEVALAS 107
[Close]
BLAST of mRNA_L-elsbetiae_contig989.18828.1 vs. uniprot
Match: B7K8Z1_GLOC7 (Glutaredoxin n=1 Tax=Gloeothece citriformis (strain PCC 7424) TaxID=65393 RepID=B7K8Z1_GLOC7)

HSP 1 Score: 150 bits (378), Expect = 3.000e-41
Identity = 69/109 (63.30%), Postives = 87/109 (79.82%), Query Frame = 1 
Query:  259 KAMQERTNAELQEMVSSHNILAFIKGNRLMPQCGYSGTLVNILQSLSVPFETVDVLADERIRQGIKDFSNWPTIPQLYLGGEFVGGADIVIEMYQSGELQEMIEVAAAS 585
            + +     A + ++V  + IL F+KGN+LMPQCG+S  +V IL  L VPFETVDVLAD  IRQGIK++SNWPTIPQ+Y+ GEFVGG+DI+IE+YQSGELQEM+EVA AS
Sbjct:    6 QTLTPEVKARIDKLVKDNKILVFMKGNKLMPQCGFSNNVVQILSVLGVPFETVDVLADFEIRQGIKEYSNWPTIPQVYINGEFVGGSDIMIELYQSGELQEMVEVALAS 114
[Close]
BLAST of mRNA_L-elsbetiae_contig989.18828.1 vs. uniprot
Match: K9U8M4_CHRTP (Glutaredoxin n=3 Tax=Chroococcidiopsis TaxID=54298 RepID=K9U8M4_CHRTP)

HSP 1 Score: 149 bits (377), Expect = 3.400e-41
Identity = 69/107 (64.49%), Postives = 85/107 (79.44%), Query Frame = 1 
Query:  265 MQERTNAELQEMVSSHNILAFIKGNRLMPQCGYSGTLVNILQSLSVPFETVDVLADERIRQGIKDFSNWPTIPQLYLGGEFVGGADIVIEMYQSGELQEMIEVAAAS 585
            M       L  +V  + IL F+KGN+LMPQCG+S  +V IL +L VPFETVDVLAD  IRQGIK++SNWPTIPQ+Y+ G+FVGG+DI+IEMYQSGELQ+M+EVA AS
Sbjct:    1 MTPELKERLDNLVQQNKILVFMKGNKLMPQCGFSNNVVQILNTLGVPFETVDVLADSEIRQGIKEYSNWPTIPQVYVNGQFVGGSDILIEMYQSGELQQMVEVALAS 107
[Close]
BLAST of mRNA_L-elsbetiae_contig989.18828.1 vs. uniprot
Match: D8FTI6_9CYAN (Glutaredoxin n=2 Tax=Oscillatoriales TaxID=1150 RepID=D8FTI6_9CYAN)

HSP 1 Score: 149 bits (376), Expect = 4.790e-41
Identity = 66/107 (61.68%), Postives = 87/107 (81.31%), Query Frame = 1 
Query:  265 MQERTNAELQEMVSSHNILAFIKGNRLMPQCGYSGTLVNILQSLSVPFETVDVLADERIRQGIKDFSNWPTIPQLYLGGEFVGGADIVIEMYQSGELQEMIEVAAAS 585
            M    + +++ +V  + +L F+KGN+LMPQCG+S  +V IL +L VPFETVDVLAD  IRQG+K++SNWPTIPQ+Y+ GEFVGG+DI+IE+YQ GELQEM+EVA AS
Sbjct:    1 MSTAAHDKIESLVKQNKVLVFMKGNKLMPQCGFSNNVVQILNTLGVPFETVDVLADPEIRQGVKEYSNWPTIPQVYINGEFVGGSDIMIELYQKGELQEMVEVALAS 107
[Close]
BLAST of mRNA_L-elsbetiae_contig989.18828.1 vs. uniprot
Match: A0A651DPB0_9CYAN (Glutaredoxin n=2 Tax=unclassified Leptolyngbya TaxID=2650499 RepID=A0A651DPB0_9CYAN)

HSP 1 Score: 149 bits (376), Expect = 4.790e-41
Identity = 67/102 (65.69%), Postives = 85/102 (83.33%), Query Frame = 1 
Query:  280 NAELQEMVSSHNILAFIKGNRLMPQCGYSGTLVNILQSLSVPFETVDVLADERIRQGIKDFSNWPTIPQLYLGGEFVGGADIVIEMYQSGELQEMIEVAAAS 585
            N  L  +V+   I+ F+KGN+LMPQCG+S  +V IL SL VPF TVDVLAD+ +RQGIK+FSNWPTIPQ+Y+ GEFVGG+DI+IE+YQ+GELQ+M+EVA AS
Sbjct:    6 NDRLSSLVNQDKIVVFMKGNKLMPQCGFSNNVVQILNSLGVPFSTVDVLADQEVRQGIKEFSNWPTIPQVYINGEFVGGSDILIELYQNGELQQMVEVALAS 107
[Close]
BLAST of mRNA_L-elsbetiae_contig989.18828.1 vs. uniprot
Match: L8LXD6_9CYAN (Glutaredoxin n=1 Tax=Xenococcus sp. PCC 7305 TaxID=102125 RepID=L8LXD6_9CYAN)

HSP 1 Score: 149 bits (376), Expect = 4.790e-41
Identity = 67/107 (62.62%), Postives = 87/107 (81.31%), Query Frame = 1 
Query:  265 MQERTNAELQEMVSSHNILAFIKGNRLMPQCGYSGTLVNILQSLSVPFETVDVLADERIRQGIKDFSNWPTIPQLYLGGEFVGGADIVIEMYQSGELQEMIEVAAAS 585
            M     A+L ++V+ + +L F+KG++LMPQCG+S  +V I  +L VPFETVDVLAD  IRQG+K++SNWPTIPQ+Y+ GEF+GG+DI IEMYQSGELQEM+EVA AS
Sbjct:    1 MTPELKAKLDQLVTDNKVLIFMKGSKLMPQCGFSNNVVQIFNTLGVPFETVDVLADPEIRQGVKEYSNWPTIPQIYVNGEFLGGSDIAIEMYQSGELQEMVEVALAS 107
[Close]
BLAST of mRNA_L-elsbetiae_contig989.18828.1 vs. uniprot
Match: A0A1E5QGL9_9CYAN (Glutaredoxin n=2 Tax=unclassified Desertifilum TaxID=2621682 RepID=A0A1E5QGL9_9CYAN)

HSP 1 Score: 149 bits (375), Expect = 6.740e-41
Identity = 68/107 (63.55%), Postives = 86/107 (80.37%), Query Frame = 1 
Query:  265 MQERTNAELQEMVSSHNILAFIKGNRLMPQCGYSGTLVNILQSLSVPFETVDVLADERIRQGIKDFSNWPTIPQLYLGGEFVGGADIVIEMYQSGELQEMIEVAAAS 585
            M      ++  +V+ + IL F+KGN+LMPQCG+S  +V IL +L VPFETVDVLAD  IRQGIK++SNWPTIPQ+Y+ GEFVGG+DI+IE+YQ GELQEM+EVA AS
Sbjct:    1 MTPEAQEKIDSLVNQNKILVFMKGNKLMPQCGFSNNVVQILNALGVPFETVDVLADPDIRQGIKEYSNWPTIPQVYINGEFVGGSDIMIELYQKGELQEMVEVALAS 107
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig989.18828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG05_ECTSI9.420e-7092.62Glutaredoxin n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A836CAV6_9STRA3.960e-4566.67Thioredoxin-like protein n=1 Tax=Tribonema minus T... [more]
K8GGZ7_9CYAN1.720e-4162.62Glutaredoxin n=3 Tax=Cyanobacteria TaxID=1117 RepI... [more]
A0A8K1ZX57_9CYAN2.420e-4159.81Grx4 family monothiol glutaredoxin n=1 Tax=Petrach... [more]
B7K8Z1_GLOC73.000e-4163.30Glutaredoxin n=1 Tax=Gloeothece citriformis (strai... [more]
K9U8M4_CHRTP3.400e-4164.49Glutaredoxin n=3 Tax=Chroococcidiopsis TaxID=54298... [more]
D8FTI6_9CYAN4.790e-4161.68Glutaredoxin n=2 Tax=Oscillatoriales TaxID=1150 Re... [more]
A0A651DPB0_9CYAN4.790e-4165.69Glutaredoxin n=2 Tax=unclassified Leptolyngbya Tax... [more]
L8LXD6_9CYAN4.790e-4162.62Glutaredoxin n=1 Tax=Xenococcus sp. PCC 7305 TaxID... [more]
A0A1E5QGL9_9CYAN6.740e-4163.55Glutaredoxin n=2 Tax=unclassified Desertifilum Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig989contigL-elsbetiae_contig989:18299..23331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score225.7
Seed ortholog evalue1.8e-56
Seed eggNOG ortholog2880.D8LG05
Preferred nameGRX3
KEGG koko:K07390
Hectar predicted targeting categorysignal peptide
GOsGO:0001085,GO:0001102,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006790,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006950,GO:0006979,GO:0006996,GO:0007010,GO:0008104,GO:0008134,GO:0008150,GO:0008152,GO:0009893,GO:0009987,GO:0010467,GO:0010604,GO:0010638,GO:0015036,GO:0015037,GO:0015038,GO:0016043,GO:0016226,GO:0016491,GO:0016667,GO:0019222,GO:0019538,GO:0019725,GO:0022607,GO:0030003,GO:0030029,GO:0030036,GO:0031056,GO:0031058,GO:0031063,GO:0031065,GO:0031163,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0033036,GO:0033043,GO:0033044,GO:0033554,GO:0033613,GO:0034599,GO:0042221,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043392,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0044572,GO:0045185,GO:0046916,GO:0048037,GO:0048518,GO:0048522,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051098,GO:0051100,GO:0051101,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051186,GO:0051220,GO:0051235,GO:0051246,GO:0051247,GO:0051536,GO:0051537,GO:0051540,GO:0051604,GO:0051716,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055114,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0071704,GO:0071840,GO:0080090,GO:0090311,GO:0090312,GO:0098771,GO:1901564,GO:1902275,GO:1903025,GO:1903026,GO:1905269,GO:2000677,GO:2000678,GO:2001252
EggNOG free text desc.protein disulfide oxidoreductase activity
EggNOG OGsCOG0278@1,KOG0911@2759
Ec32 ortholog descriptionGlutaredoxin
Ec32 orthologEc-21_005080.1
COG Functional cat.O
BiGG ReactioniMM904.YER174C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko03110
Exons3
Model size1116
Cds size555
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig989.18828.1prot_L-elsbetiae_contig989.18828.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig989 18827..23298 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817048.8724709-UTR-L-elsbetiae_contig989:18298..188261622817048.8724709-UTR-L-elsbetiae_contig989:18298..18826Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig989 18299..18826 -
1691684008.6519947-UTR-L-elsbetiae_contig989:18298..188261691684008.6519947-UTR-L-elsbetiae_contig989:18298..18826Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig989 18299..18826 -
1622817048.9189785-UTR-L-elsbetiae_contig989:23298..233311622817048.9189785-UTR-L-elsbetiae_contig989:23298..23331Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig989 23299..23331 -
1691684008.7135878-UTR-L-elsbetiae_contig989:23298..233311691684008.7135878-UTR-L-elsbetiae_contig989:23298..23331Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig989 23299..23331 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817048.8831823-CDS-L-elsbetiae_contig989:18826..189581622817048.8831823-CDS-L-elsbetiae_contig989:18826..18958Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig989 18827..18958 -
1691684008.6750166-CDS-L-elsbetiae_contig989:18826..189581691684008.6750166-CDS-L-elsbetiae_contig989:18826..18958Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig989 18827..18958 -
1622817048.894589-CDS-L-elsbetiae_contig989:20148..202711622817048.894589-CDS-L-elsbetiae_contig989:20148..20271Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig989 20149..20271 -
1691684008.6856756-CDS-L-elsbetiae_contig989:20148..202711691684008.6856756-CDS-L-elsbetiae_contig989:20148..20271Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig989 20149..20271 -
1622817048.906034-CDS-L-elsbetiae_contig989:22998..232981622817048.906034-CDS-L-elsbetiae_contig989:22998..23298Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig989 22999..23298 -
1691684008.698592-CDS-L-elsbetiae_contig989:22998..232981691684008.698592-CDS-L-elsbetiae_contig989:22998..23298Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig989 22999..23298 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig989.18828.1

>prot_L-elsbetiae_contig989.18828.1 ID=prot_L-elsbetiae_contig989.18828.1|Name=mRNA_L-elsbetiae_contig989.18828.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=185bp
MASRCFALLCIITTTARVLGFALQPLGVASRVGAKPLNVQDTQHICQLGE
QRHVTGAATTRLGMSDDFDGDSFGAKAMQERTNAELQEMVSSHNILAFIK
GNRLMPQCGYSGTLVNILQSLSVPFETVDVLADERIRQGIKDFSNWPTIP
QLYLGGEFVGGADIVIEMYQSGELQEMIEVAAAS*
back to top

mRNA from alignment at L-elsbetiae_contig989:18299..23331-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig989.18828.1 ID=mRNA_L-elsbetiae_contig989.18828.1|Name=mRNA_L-elsbetiae_contig989.18828.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5033bp|location=Sequence derived from alignment at L-elsbetiae_contig989:18299..23331- (Laminarionema elsbetiae ELsaHSoW15)
GGCTGCCGCTGCAACGACGACAGCACACGAAAGATGGCTTCTCGCTGCTT
CGCCCTCCTCTGCATCATAACGACCACGGCAAGAGTACTCGGTTTCGCGC
TTCAGCCCCTTGGAGTGGCCAGCCGCGTTGGCGCCAAGCCGCTGAACGTT
CAAGACACACAACATATCTGTCAACTTGGAGAGCAGCGACATGTCACGGG
TGCAGCGACGACACGCTTAGGGATGTCCGACGATTTTGACGGGGATAGCT
TCGGGGCGAAAGCAATGCAGGAGAGAACGAACGCCGAGCTGCAGGAGATG
GTTTCCTCGCACAACATCCTGGCATTCATCAAGGTGAAGCACGCACTCTC
AGAGGACCAAAAGTGAAAAGCTCTCGTATCGCATGGAAGGTGCAGACGCA
TGTATTTATGCAGGTACTCTCCGATGGCTCACGTTCCACAGAGTCAGTGA
CGCTAGATATCATGTTGCCCACTTTGCATAGGATTGGCCGGGGGTTTCCA
ACATGAAAAAAATCGAAGTGGGTCTCTCTGGCTGACAGGTGTGGCCTCGC
AAACCTGTGCGCCCAATACAGTGGTACCTCCCTCCGACCCACAGATGTAC
ATATGTACAGCAGTACATCTTACACTCCAGATCGCGCCCATCAGTAACAG
CAAGAGGGCAAGTATTCTACATATGCTCCGAGCCTGGGGGTACACGCTCG
TCGGTACGAGCTAAACAAGACAAATCGCTTGTCTGTCGTCGACTACTCTC
CCTTGGGGGAGGTAGAGGTGCCTCAGCATGGTTTGCAACTTCTTGTTCTG
TCGGTACTTGTAGGCGGGAGCACTGCTGTTGCAGACCACCGGGTTTCGGT
TGCACTGGGACTCCTACCTGATCCAAGCAAGGGCAGGAGACCTGTGCTCG
TGTTCCAGGAAATGCATGGAGTGTGAACCGTCTCAAGTCGTCACGCGGCA
CCAGCACAAAAAGCCTGTCATACAGACCCCGTTTGCATCTCAATTCCGAA
GCCGTGTATGCTCCTCTGCTGTCTGTAAGCCCAGTCTCGCCAAGTCTAAT
GAGCGACAGCAGCCGTTTGGCTTATTTCATTTTTTTTCGTTTGGAACCTC
GGTACTCTGTTTACTACAATACCTCCTTTCAGCAACGGCCGCTGAGAAGA
GTTTCCAACCCAGTCAGTCCGGTAAAGAAAATTGAATTACTAGTCTGATT
GACCACCAAACCACGCGCTGGACGCGGCTGTTTTCGTGACATTTGAGGGT
GTGGGCATTTCAGTTTTCTTACTCTTAGATCGCACTCGCAGATGGTGTGC
CCAAAGAAAGAAGTCTATGCGATCATGTGCTGGTACAGCTGCCATCAAAA
TCGGGGGTACCCGCGATCCGAATTGCACGGTGGTCAGGCGGAATTGGTGA
GGATTGTGATCAAAGAGTGATGAAAGGCCAGTGAAGTAAGTGGCGCTCCC
AAGACGGTCGACACCAATCTATTGGAGCCGGGTGTTGCTGCACATCCGCG
AGAGACGTGTAGGCTGCCCACAGCAGTGTTGGCAAACCTCCCGACTACAA
TGCCATCCAAGCTGTTGCGTTTCCAAGCCGGCTATTCGATGTACATCGGG
TGTGTCTTGTTCAGCGCCAATGCCAGTCAAACTGATGTTGGCTTTTCGAG
AAGACTATATACGTATTCGACACACAAGAGCCAAGGGTGTCTTGGCCAGC
ACTTCGAATCCACCCACAGCACACCAGCACGTATTTGGCCTCCCTTCAAG
CTAAATCGAGGACGATAGTGAGGCATGAGGCATGAAGGGTCCAGGGTGCT
CAGTGTGGCTTTGCAACCCACTACCGCTTGCGCCAAAATACACCAAATGC
GGCACTCTTGATGTATGTGCGCGCACATTCACCACCTGAGACGGCGAGAC
TTGGCTGGTAGAGTTTACATGCCACAAGGAGATTAGCAGGACACCGTCCG
TGTGCTTTGGGAATGAATTATCGGGGGGTGTCGTGTGTCGAGCGTCCAGG
CTCGCTGCTGAGAGACGCCGAAGCGATAGAGATCTGCCGAGCCTTTTGAA
TTTACCCAAACACCCACTCCTCCTGTACGCGACTCTCAGTGTCACGAAAC
ATTATTTTCCGTATCGAGTGGCACGAGGGGGCTCGCAGCAGCGGAATATA
TGTATGTATGTATATGTATGTATGTTGTCTTCACATTAAAAACCGTTCCG
ATCTCTCCATCCAGTACCTCTCAATGTCCGTACTAACCCAACACTTGATG
CGGTCAATTCCCGTGATCACAGGCTAACGTATACCTAAGAAAAGGTACAC
GAAAAATAAAATGGACCCAAAGGGCCAGCAAATCAATAATGACACAGATA
TCGAGTCTGGAGCCCTTCGCTCCCCTCTACACGCTATGTGAGGTAAAACA
AAACTGGAACAACCAACACCACCACTATCTTGGTACCCCAACAAAGCCGG
GGGGTTCCGCGCCGGGTTCTCGCCGGCCAGCAGCCTTGAAAATCAATGAA
ATCGGGTCTGTGAGAGAGGCTGAAAACAGACGGCAACGTGAAATGGCTTT
GCCGTCTCATGTGTCTCCAACACAGGAGGGCAGACCTCCTGTTTCTCTTC
GGGGTCTTTCGTAAGGAAACGACTTGTCACTAATTTTCCATCTACACTTG
ACCCCAATGCCAAACCCATCGTGGCGACGTCGGGGGAAGATTTTTGTACA
CATCCTTCGTTCCACGAGAAGTTGGAGGATGCTGTATTCCTTGCGAAGGT
CGCCCAACCTGAGGCAGCCAACCTGAGGCAGCCTACCACTTACAGCCCCC
ACATGAGTGTATGTATGCACTTGTTTGGACAGCATTGCTCCGCTTCGGTC
CTATGCAGTGTGTCATCTGCGGAGAAGCGTGCAGTATCTAATTTCCCCTG
TATTCTTGTCTTTCCCCAAGCATGCTGTTGTGGTGGTGAGTAAATGTGGT
GTTCACGTTCCTTCTGCGTGCCTTGTTGCTGAATGGAACACGATATGTCC
ACGACAACGCGCTGATGAAGGCGTGTCTTCATGTCGTTGGTGTGTGCTGC
TGCTGTTCAGGGCAATCGGCTGATGCCGCAGTGCGGCTACAGCGGCACTT
TGGTGAACATCCTGCAGAGCCTGTCGGTGCCCTTCGAGACCGTCGACGTG
CTGGCCGACGAGCGCATCCGGCAAGGAATAAAGGCAAGCCGAAGAAGAGG
GAGAGCCCGGCCCTGCTGCTGCTGGTGTGCGATATCGTGTTTTCGATCAG
TGTGCTGCTATTTATTTACCTGTGGAATCTATCCTGCGAGGCGACCAAAC
GATTTGCTTCCGGGAGCGTTGATGTTTTCGGCCGGCGGTCTTTCGGTAGC
AATCAGATCCCAACGAAAACCCCAGCGCCAGCGAGCACCCTTTCTACAAT
AGCATGTACGTACATACGCACCACGCGGCAATTGATCGAGAAGGCTTTTG
CTTTTTGCCAAACCAATCGGCTGCTGCGCAAACAATTGTGCACGTACATA
CATACGTGCATCATGCGCTTTCGGTGCACCTCTCCGGGTGCTTCCTCTCT
TGACTTTTATCTCCACTTATCGTTGTATCGTTCGGCAATGGTCCCGAGTA
TGCGAAAGTGCCAACCGACTCGTCGAAAAGCCCAGTCTCTCTCGTCGAAA
CCCGAGACCCATCTTCGTAGACAACAAGTAGTGAGAAAATACACGTACGG
CAACCTCTTAACGCTTTACAGCAAGAAGCCATGTTGCTCCGTGGACGGCA
GACGTGTCCTTTTGTCCTGCAGTTGACGGTTGCTTGGACTCCAGTGCTAA
AATACTCTTTGGCTGTGTGAATGCTCACACGACAGAGGCATGTCTCATGA
GACGCTCGGTACTACTCCACACGCTAACCTGCGATGTTTGTCTTGGGTGG
GCCCGATATGAAACCAATCAGGTAACTGCGTGCCTCAAATCATTTTCTCT
TGGGGCGTGGCAGTCAGAACGGTGCAGCTCCCACCGTAGACCTCGGCAGC
CGACATGTTTTTCTTTTGGTCGTTTCCAAACCTTGAAAGCACACCTGAGC
AATAAATAGAACCCCTTAAGAGCGCCCTAAGAGACAACCCTTGTAGTTGC
TGTCGGTTGCTCCTCAGAGAAATCGAAAACGAAAGCACATGCACGAGATT
CCCACGTGGTAGTCGCACGCTCTCCCGAACGGAAACATAAGAGTCGTCGG
GTGTTGCTGGCAATTGATCCCGTAGAGCTTGAACTTGAGGCAGCAACGCG
TCTCACGGAATAATGCACCCCACATCTGCTCTGTGGCGACAGAGGTTCCA
TGCCTGACTCCGTGAGCACCGTTCCGTCTGTCTTGGCTACCCCTGCCTCC
TTGCCGGCCATCTTCACCCACAGGACTTCAGCAACTGGCCAACAATTCCG
CAACTTTACCTGGGAGGAGAGTTTGTTGGCGGCGCCGACATAGTGATTGA
GATGTACCAGTCTGGAGAGTTGCAAGAGATGATAGAAGTGGCGGCAGCGT
CCTAGATGTTGGGGCGATTTATCTTCGGGAGTGTCGGGCTTTTGCGCGAG
CGCATGACAAACATGGCGATCTTTGCCTTTTACAGGAAATCGTGATCGTG
GTCACTGTTTGTCTAGATCTACAAGTAATGTTTTAGCTACAAACAGTGTA
GATACCATAATATGTAGACTTGCATGTAGTCTTTGGCACCCGCGAATAAA
AATTAACACATCCAGCTCTCGGTGATCATTTATCATGAGGCCCAAGCCTA
GCGGCGACGGTTTCTGTGGGGAAACGACAGTCACAACTCGTCCAGCAGGC
CAAAGGTCGAATCGGAAGGAAACCTCCTTTAGACTAATACTTTTACTAGA
AGTATCTCGCAACGAATTTGATTTTCCTTCGCTAACTGTAGATAGACTAT
AGTCTATATCTAGAGAAGTACTAAACCCTCGTGTATGTGTCGTCAGAGAG
TAAATATTCCGATTTCTCGAGGAATTTCCGGCGTCTCTGTTGGAGATGAC
GATTTTTGGAGATGCAATGAAGGTGCGCAAAGT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig989:18299..23331-

>mRNA_L-elsbetiae_contig989.18828.1 ID=mRNA_L-elsbetiae_contig989.18828.1|Name=mRNA_L-elsbetiae_contig989.18828.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1110bp|location=Sequence derived from alignment at L-elsbetiae_contig989:18299..23331- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTTCTCGCTGCTTCGCCCTCCTCTGCATCATAACGACCACGGCAAG
AGTACTCGGTTTCGCGCTTCAGCCCCTTGGAGTGGCCAGCCGCGTTGGCG
CCAAGCCGCTGAACGTTCAAGACACACAACATATCTGTCAACTTGGAGAG
CAGCGACATGTCACGGGTGCAGCGACGACACGCTTAGGGATGTCCGACGA
TTTTGACGGGGATAGCTTCGGGGCGAAAGCAATGCAGGAGAGAACGAACG
CCGAGCTGCAGGAGATGGTTTCCTCGCACAACATCCTGGCATTCATCAAG
ATGGCTTCTCGCTGCTTCGCCCTCCTCTGCATCATAACGACCACGGCAAG
AGTACTCGGTTTCGCGCTTCAGCCCCTTGGAGTGGCCAGCCGCGTTGGCG
CCAAGCCGCTGAACGTTCAAGACACACAACATATCTGTCAACTTGGAGAG
CAGCGACATGTCACGGGTGCAGCGACGACACGCTTAGGGATGTCCGACGA
TTTTGACGGGGATAGCTTCGGGGCGAAAGCAATGCAGGAGAGAACGAACG
CCGAGCTGCAGGAGATGGTTTCCTCGCACAACATCCTGGCATTCATCAAG
GGCAATCGGCTGATGCCGCAGTGCGGCTACAGCGGCACTTTGGTGAACAT
CCTGCAGAGCCTGTCGGTGCCCTTCGAGACCGTCGACGTGCTGGCCGACG
AGCGCATCCGGCAAGGAATAAAGGGCAATCGGCTGATGCCGCAGTGCGGC
TACAGCGGCACTTTGGTGAACATCCTGCAGAGCCTGTCGGTGCCCTTCGA
GACCGTCGACGTGCTGGCCGACGAGCGCATCCGGCAAGGAATAAAGGACT
TCAGCAACTGGCCAACAATTCCGCAACTTTACCTGGGAGGAGAGTTTGTT
GGCGGCGCCGACATAGTGATTGAGATGTACCAGTCTGGAGAGTTGCAAGA
GATGATAGAAGTGGCGGCAGCGTCCTAGGACTTCAGCAACTGGCCAACAA
TTCCGCAACTTTACCTGGGAGGAGAGTTTGTTGGCGGCGCCGACATAGTG
ATTGAGATGTACCAGTCTGGAGAGTTGCAAGAGATGATAGAAGTGGCGGC
AGCGTCCTAG
back to top