mRNA_L-elsbetiae_contig9887.18824.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9887.18824.1
Unique NamemRNA_L-elsbetiae_contig9887.18824.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9887.18824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9887contigL-elsbetiae_contig9887:2350..6240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1877
Cds size1011
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9887.18824.1prot_L-elsbetiae_contig9887.18824.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9887 3159..6183 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817048.4513972-UTR-L-elsbetiae_contig9887:2349..31581622817048.4513972-UTR-L-elsbetiae_contig9887:2349..3158Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9887 2350..3158 -
1691684008.3261397-UTR-L-elsbetiae_contig9887:2349..31581691684008.3261397-UTR-L-elsbetiae_contig9887:2349..3158Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9887 2350..3158 -
1622817048.500783-UTR-L-elsbetiae_contig9887:6183..62401622817048.500783-UTR-L-elsbetiae_contig9887:6183..6240Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9887 6184..6240 -
1691684008.367107-UTR-L-elsbetiae_contig9887:6183..62401691684008.367107-UTR-L-elsbetiae_contig9887:6183..6240Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9887 6184..6240 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817048.4713514-CDS-L-elsbetiae_contig9887:3158..32231622817048.4713514-CDS-L-elsbetiae_contig9887:3158..3223Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9887 3159..3223 -
1691684008.343985-CDS-L-elsbetiae_contig9887:3158..32231691684008.343985-CDS-L-elsbetiae_contig9887:3158..3223Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9887 3159..3223 -
1622817048.4869993-CDS-L-elsbetiae_contig9887:5237..61831622817048.4869993-CDS-L-elsbetiae_contig9887:5237..6183Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9887 5238..6183 -
1691684008.3555813-CDS-L-elsbetiae_contig9887:5237..61831691684008.3555813-CDS-L-elsbetiae_contig9887:5237..6183Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9887 5238..6183 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9887.18824.1

>prot_L-elsbetiae_contig9887.18824.1 ID=prot_L-elsbetiae_contig9887.18824.1|Name=mRNA_L-elsbetiae_contig9887.18824.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=337bp
MPRECSHQGCPKRPSYGKAGGKAEYCRDHAKDGMVDVNSKKCTHHGCTKR
PSYGKAGSKAEYCRGHAKDGMVDVNCKKCTHHGCTKGPSYGKAGRKAEYC
RGHAKDGMVDVNSKKCTHHGCTKRPSYGKAGGKAEYCRDHAKDGMVDVVN
KRCTHHDCTKHPSYGKTGGKAEYCRDHANDGMVDVVSKRCTFPGCTTIAS
FGEENTGTRKFCIRHAEEEMIFLPGRSRGDRQRCGGADDAGARGSGTASG
SRQTKNRTSRSGSGGDLHPVRVKPKGADNEVPDDDNLTACPEPGDAGVKT
EDMELPCEIEPWKAAGRTSAARTKRRKAVAGQAGGP*
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mRNA from alignment at L-elsbetiae_contig9887:2350..6240-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9887.18824.1 ID=mRNA_L-elsbetiae_contig9887.18824.1|Name=mRNA_L-elsbetiae_contig9887.18824.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3891bp|location=Sequence derived from alignment at L-elsbetiae_contig9887:2350..6240- (Laminarionema elsbetiae ELsaHSoW15)
CGATTAAGGCAAGGGTCTGGATAAGTGCGACTAGGGCCTCATCGAAAGAA
CAGAAGGATGCCCCGAGAGTGCTCTCACCAGGGATGCCCCAAGCGGCCGT
CTTACGGCAAGGCTGGCGGGAAGGCGGAGTACTGCCGTGACCATGCCAAG
GACGGGATGGTGGACGTGAACAGCAAGAAGTGCACCCACCACGGTTGCAC
CAAGCGGCCGTCATACGGCAAGGCTGGCAGCAAGGCGGAGTACTGTCGTG
GCCACGCCAAGGATGGGATGGTGGACGTGAACTGCAAGAAGTGCACCCAC
CACGGTTGTACCAAGGGGCCGTCATATGGCAAGGCTGGCAGGAAGGCGGA
GTACTGCCGTGGCCATGCCAAGGATGGGATGGTGGACGTGAACAGCAAGA
AGTGCACCCACCACGGTTGTACCAAGCGGCCGTCATACGGCAAGGCTGGC
GGCAAGGCGGAGTACTGCCGTGACCATGCCAAGGACGGGATGGTTGATGT
TGTCAACAAGAGGTGCACCCACCACGATTGCACCAAGCACCCGTCATACG
GCAAGACTGGTGGCAAGGCGGAGTACTGCCGTGACCATGCCAACGACGGG
ATGGTTGATGTTGTCAGTAAGAGGTGCACCTTTCCCGGGTGCACCACGAT
TGCCAGCTTCGGCGAGGAGAACACTGGCACCCGGAAGTTCTGCATACGGC
ACGCCGAAGAAGAGATGATCTTTCTTCCTGGTCGGTCCAGGGGAGACAGA
CAAAGATGCGGCGGAGCTGATGACGCCGGAGCAAGGGGTAGCGGCACAGC
TAGCGGGAGCAGGCAGACCAAGAATCGAACCAGCCGGAGTGGTAGCGGTG
GGGACTTGCATCCGGTCCGGGTAAAACCAAAAGGAGCTGACAACGAAGTG
CCCGACGACGATAATTTGACGGCATGTCCGGAGCCAGGCGACGCGGGGGT
CAAGACGGAGGACATGGAATTGCCTTGCGAGATAGAGCCGTGGAAAGCTG
CAGGTACATTGAAACAAGTATATACATAGTCGATATCTCGGGGTGCTGTT
GTACATGCTTGTCGATGTAGAAGAGACAATGGATTTTGAGGCAGATCCAG
GTGCAGTCGTATGTAGTTGGACGCACAACCGAACAGAACTACTGTAACAG
TGGGCACAACCGCTGCAGCGCCGAGCGGCGAACAGATAGAGTGACGGCAT
TGAGATCGGGTTTTGAATTTCGTTACCGTCAATCACACCAGATACCATGT
CCCTGGTGGATACATTAGAGCGCCTGGTTATATTTTCACCGGGGGTGGTA
TTTTGTGGGTGGGGTGGTACCTATTCTGGCACGGGTTATAGAGTGCATGT
GTTGTGGGGCCCGTCGAAGGGGGGTGGTAACGACGGGGTGTTTTTACTGT
CCGCGAGAAAAATTGCTGCAGTCTGCAGGAGTTAGCTTGAAACGGAAATA
AATGTGCGTGATAAATATCGAGCGGAGGTGTCTTAAGCGCCTGCAACATA
GTCTATGCACACATGAAACTCGTGCATGTACGTACGTACCGTAAGTTGCT
CTGATGCTCCCCCCCCCTACATTTTGGCCTCGAAGCACGACTTCTTGATT
CCCTCCCAGAGGGAAAGTGATTTTGGAGGCAAACATAAAAATCCTCCTGG
GGTAGCGGCTTTTTATGACACCCCCCCGGGGGGTGGGTGTACTCCACTAG
CTACCTCCCGTGGTAATTTCCACACTCTCAACTGTTTGTATGAACAAGGA
GATCATTTATTTGGAACGGAATACGACGTCCGGTGTTGACTGCTGACACT
TACGGTGCCTTGCGGGGTGTCCACAAGTAGAGCAACTTACAGTATGTTTG
AGCGTGTTTTTTGCCTTCCCCCTCCGGATAGATTTCCCCCCGGGGTAGTT
AGTGCTGTAAGAAAGAAGACCCCCTCCCTGGTTAGCTACATCGATATTAT
GACTTCCCCCCAACGGGTGTGCGTTCGAAAAAATGCAATTGCTCCCGGGG
GGCAAATCAGGACAATTTTTGGTAAATAGACACGCCATCAAACCCATGTT
GAAATGAGAGAGGAGAAAGAAAATAGCCCATGGAAGTATGGGCCATCAAC
ACCTTGTGTGACACGAAATTCCACATTGCATGGAGGTCGAAAGCCGTCTG
CGTTCCCCGCTTGCATATCCGCAATAACATATCCATTTCCTACCCTGGCG
CGCTTCGAGCGAGTGCAAAAACCATGTTGTTAACCATAAAACCGTACCCC
ACGAAGGCTACCGTTGTCTACCTACTGTTTGTACAGTACTCACAAGGAAT
ATCATAATAGCATGCCCTGTGGTGGACATGTCAACCGAAGACACTAGGAT
ATGATTGGTACACCGCGCACACTATTGTAAAGCACGAGCAAAAATACAGA
AGGAAACAAAAAAAGCTAGCAGACCCGACCCCAGCTGGACTGGTCTCGCA
ACTACCGAATGTCACGCGGGATGAAAGCAGGGGCCAGATAGTGTTATGCT
CAACCTCAGTGGGGCGTCGTTATCTTCAGTGGTCTGGGTGATATTTTGGC
CTCGGCTCTGTGTCTGGAAATATCATCACCGGGGGGTGGTATCTGTAGGG
GGTGGGTGAGGGTGGCATCTTGTGTGGTTTACGGTAGATCGATGCTTGGT
GTAGGCGGGGAAAAGCTACATGCTACAACTATGATGCAACATCGTACAGA
GGAAGCCCGATGCACTCATGTCGTGTTTCGTTTTGGTGGCGTTACCCCCG
TATGCACTATGCTACCCTGGTTTTCAAATGCTACGTTCAGTCTGCTCGTG
TCCGCCATCGGCGCAGGCAGGTTTCGCTTTGTCACATTTTCTGCACTTCA
CAGAGAGATTTTGGTGGTGTGCCACTTTGATGGCATCATTATTTCACATG
ACCAGCATCCGTTTGCTCTCCGGCGGTGTTTGTTTTACATCTAACCCCGA
CCTCACCTGTTTGCTTGTCGTCCGGACGTGGCTCTTGTTCGCCCAATCCT
TTCTCCAATCGATGCAGGCCGGACAAGCGCAGCGAGGACGAAGCGGAGAA
AGGCCGTGGCGGGGCAAGCGGGAGGTCCCTGATATATCTGACGAACAGCA
GCAGCAGCAGCAGCACATTAGTGTAGGCGGGACAGCGTGGCCACGAGCGC
CTGCAAACAGCGGAATCACTGCCGAGCGTACTGCTGAAAATGAGCGACCA
CCTTTTGTTGATCATGTGCGACTGTCGTGCGTACGGTGCGATGTTTAGCT
CTTCCAGTGGCACGATGATGGACGTGGGTGCCTTGTGTATCTGCCGTGAA
AAGCTAGGTTTTAGACTGCCATGACTGCCATGTGGCTTTCTTTGTTGGTG
TATTTTTATCTTAACTGTATTCTCGCCCGGAATGCGTGTTGTTATTGAGT
TGGTTCTCGGCGTCGTGATGTAGCCTACATAGTTCGAAGGCGCCGTTTGT
TTTATTCGCGGCCGCCCTTTTGTAGATCGATATCTCTCCCTCCAGGGAGC
TCTGCTGGCGGCACTCCTACTACCGCAGATTTGCAACCAAGTAAAGCGGC
TATCTAGGTTTATCTTTGCCCGTGTTGCGCCTCTACGAGCTTTTGTGGGT
TCGGCACTGCAGTGGCGAAGGGTTGCAGCATCAATACTCAGCATTTTAGG
TGACAGCCAGTGAAAATACTTGGCGGATCGTGCAATATTTGTGTTTTGCA
TCTCTCTCTGTGTGTGTGTGCGTGTGTGTGTATGTTTTCGTCCCATTTAT
TCGGGCGCCTGCCACACGTTGCGGTGTGTGTACAACATGCACGTTGCGGT
GCTGCTTCTTTGTACAGCGTGACGTATCCGCCGGGGTCGCACAAGAGGGA
GTAAATACTGGGAATTTTTTCTTATTTTTAGTTATTGTTTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9887:2350..6240-

>mRNA_L-elsbetiae_contig9887.18824.1 ID=mRNA_L-elsbetiae_contig9887.18824.1|Name=mRNA_L-elsbetiae_contig9887.18824.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2022bp|location=Sequence derived from alignment at L-elsbetiae_contig9887:2350..6240- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCCGAGAGTGCTCTCACCAGGGATGCCCCAAGCGGCCGTCTTACGG
CAAGGCTGGCGGGAAGGCGGAGTACTGCCGTGACCATGCCAAGGACGGGA
TGGTGGACGTGAACAGCAAGAAGTGCACCCACCACGGTTGCACCAAGCGG
CCGTCATACGGCAAGGCTGGCAGCAAGGCGGAGTACTGTCGTGGCCACGC
CAAGGATGGGATGGTGGACGTGAACTGCAAGAAGTGCACCCACCACGGTT
GTACCAAGGGGCCGTCATATGGCAAGGCTGGCAGGAAGGCGGAGTACTGC
CGTGGCCATGCCAAGGATGGGATGGTGGACGTGAACAGCAAGAAGTGCAC
CCACCACGGTTGTACCAAGCGGCCGTCATACGGCAAGGCTGGCGGCAAGG
CGGAGTACTGCCGTGACCATGCCAAGGACGGGATGGTTGATGTTGTCAAC
AAGAGGTGCACCCACCACGATTGCACCAAGCACCCGTCATACGGCAAGAC
TGGTGGCAAGGCGGAGTACTGCCGTGACCATGCCAACGACGGGATGGTTG
ATGTTGTCAGTAAGAGGTGCACCTTTCCCGGGTGCACCACGATTGCCAGC
TTCGGCGAGGAGAACACTGGCACCCGGAAGTTCTGCATACGGCACGCCGA
AGAAGAGATGATCTTTCTTCCTGGTCGGTCCAGGGGAGACAGACAAAGAT
GCGGCGGAGCTGATGACGCCGGAGCAAGGGGTAGCGGCACAGCTAGCGGG
AGCAGGCAGACCAAGAATCGAACCAGCCGGAGTGGTAGCGGTGGGGACTT
GCATCCGGTCCGGGTAAAACCAAAAGGAGCTGACAACGAAGTGCCCGACG
ACGATAATTTGACGGCATGTCCGGAGCCAGGCGACGCGGGGGTCAAGACG
GAGGACATGGAATTGCCTTGCGAGATAGAGCCGTGGAAAGCTGCAGATGC
CCCGAGAGTGCTCTCACCAGGGATGCCCCAAGCGGCCGTCTTACGGCAAG
GCTGGCGGGAAGGCGGAGTACTGCCGTGACCATGCCAAGGACGGGATGGT
GGACGTGAACAGCAAGAAGTGCACCCACCACGGTTGCACCAAGCGGCCGT
CATACGGCAAGGCTGGCAGCAAGGCGGAGTACTGTCGTGGCCACGCCAAG
GATGGGATGGTGGACGTGAACTGCAAGAAGTGCACCCACCACGGTTGTAC
CAAGGGGCCGTCATATGGCAAGGCTGGCAGGAAGGCGGAGTACTGCCGTG
GCCATGCCAAGGATGGGATGGTGGACGTGAACAGCAAGAAGTGCACCCAC
CACGGTTGTACCAAGCGGCCGTCATACGGCAAGGCTGGCGGCAAGGCGGA
GTACTGCCGTGACCATGCCAAGGACGGGATGGTTGATGTTGTCAACAAGA
GGTGCACCCACCACGATTGCACCAAGCACCCGTCATACGGCAAGACTGGT
GGCAAGGCGGAGTACTGCCGTGACCATGCCAACGACGGGATGGTTGATGT
TGTCAGTAAGAGGTGCACCTTTCCCGGGTGCACCACGATTGCCAGCTTCG
GCGAGGAGAACACTGGCACCCGGAAGTTCTGCATACGGCACGCCGAAGAA
GAGATGATCTTTCTTCCTGGTCGGTCCAGGGGAGACAGACAAAGATGCGG
CGGAGCTGATGACGCCGGAGCAAGGGGTAGCGGCACAGCTAGCGGGAGCA
GGCAGACCAAGAATCGAACCAGCCGGAGTGGTAGCGGTGGGGACTTGCAT
CCGGTCCGGGTAAAACCAAAAGGAGCTGACAACGAAGTGCCCGACGACGA
TAATTTGACGGCATGTCCGGAGCCAGGCGACGCGGGGGTCAAGACGGAGG
ACATGGAATTGCCTTGCGAGATAGAGCCGTGGAAAGCTGCAGGCCGGACA
AGCGCAGCGAGGACGAAGCGGAGAAAGGCCGTGGCGGGGCAAGCGGGAGG
TCCCTGAGCCGGACAAGCGCAGCGAGGACGAAGCGGAGAAAGGCCGTGGC
GGGGCAAGCGGGAGGTCCCTGA
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