mRNA_L-elsbetiae_contig9879.18816.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9879.18816.1
Unique NamemRNA_L-elsbetiae_contig9879.18816.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9879.18816.1 vs. uniprot
Match: A0A6H5JZT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZT8_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 2.310e-7
Identity = 32/41 (78.05%), Postives = 33/41 (80.49%), Query Frame = 2 
Query:    2 RTLDAWVVRDSSVTSPGRAPLRSLSPDVPIEKKEAPARRGR 124
            RTLDAWVVRD S     RAPLRSLSPDVPI+K E PARRGR
Sbjct:   60 RTLDAWVVRDQS----DRAPLRSLSPDVPIDK-EVPARRGR 95
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9879.18816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JZT8_9PHAE2.310e-778.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9879contigL-elsbetiae_contig9879:1747..2062 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size317
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817047.6213057-CDS-L-elsbetiae_contig9879:1746..20611622817047.6213057-CDS-L-elsbetiae_contig9879:1746..2061Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9879 1747..2061 +
1691684007.6390655-CDS-L-elsbetiae_contig9879:1746..20611691684007.6390655-CDS-L-elsbetiae_contig9879:1746..2061Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9879 1747..2061 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9879.18816.1prot_L-elsbetiae_contig9879.18816.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9879 1747..2061 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9879.18816.1

>prot_L-elsbetiae_contig9879.18816.1 ID=prot_L-elsbetiae_contig9879.18816.1|Name=mRNA_L-elsbetiae_contig9879.18816.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
AHAGRLGRPRLFRHLAWQSASAIPLAGRPHRKKGSSSPSRPEISGGGGGR
PDDLLYGHREQTLTAARADERDGNGSERGGNVHEKRAPAEARRRRGQAQA
QERNR
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mRNA from alignment at L-elsbetiae_contig9879:1747..2062+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9879.18816.1 ID=mRNA_L-elsbetiae_contig9879.18816.1|Name=mRNA_L-elsbetiae_contig9879.18816.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=316bp|location=Sequence derived from alignment at L-elsbetiae_contig9879:1747..2062+ (Laminarionema elsbetiae ELsaHSoW15)
GCGCACGCTGGACGCCTGGGTCGTCCGAGACTCTTCCGTCACCTCGCCTG
GCAGAGCGCCTCTGCGATCCCTCTCGCCGGACGTCCCCATCGAAAAAAAG
GAAGCTCCAGCCCGTCGAGGCCGGAAATCAGCGGCGGCGGCGGCGGTCGC
CCAGACGACCTCCTCTACGGCCACCGTGAACAAACGCTCACCGCGGCTCG
CGCAGACGAAAGGGACGGAAACGGCAGCGAAAGGGGCGGAAACGTTCACG
AGAAAAGAGCCCCAGCCGAAGCCCGCCGCCGCCGCGGCCAAGCCCAAGCC
CAGGAACGCAACCGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9879:1747..2062+

>mRNA_L-elsbetiae_contig9879.18816.1 ID=mRNA_L-elsbetiae_contig9879.18816.1|Name=mRNA_L-elsbetiae_contig9879.18816.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig9879:1747..2062+ (Laminarionema elsbetiae ELsaHSoW15)
GCGCACGCTGGACGCCTGGGTCGTCCGAGACTCTTCCGTCACCTCGCCTG
GCAGAGCGCCTCTGCGATCCCTCTCGCCGGACGTCCCCATCGAAAAAAAG
GAAGCTCCAGCCCGTCGAGGCCGGAAATCAGCGGCGGCGGCGGCGGTCGC
CCAGACGACCTCCTCTACGGCCACCGTGAACAAACGCTCACCGCGGCTCG
CGCAGACGAAAGGGACGGAAACGGCAGCGAAAGGGGCGGAAACGTTCACG
AGAAAAGAGCCCCAGCCGAAGCCCGCCGCCGCCGCGGCCAAGCCCAAGCC
CAGGAACGCAACCGAGCGCACGCTGGACGCCTGGGTCGTCCGAGACTCTT
CCGTCACCTCGCCTGGCAGAGCGCCTCTGCGATCCCTCTCGCCGGACGTC
CCCATCGAAAAAAAGGAAGCTCCAGCCCGTCGAGGCCGGAAATCAGCGGC
GGCGGCGGCGGTCGCCCAGACGACCTCCTCTACGGCCACCGTGAACAAAC
GCTCACCGCGGCTCGCGCAGACGAAAGGGACGGAAACGGCAGCGAAAGGG
GCGGAAACGTTCACGAGAAAAGAGCCCCAGCCGAAGCCCGCCGCCGCCGC
GGCCAAGCCCAAGCCCAGGAACGCAACCGA
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