mRNA_L-elsbetiae_contig9878.18815.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9878.18815.1
Unique NamemRNA_L-elsbetiae_contig9878.18815.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9878.18815.1 vs. uniprot
Match: A0A6H5JNR4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNR4_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 2.000e-60
Identity = 105/128 (82.03%), Postives = 115/128 (89.84%), Query Frame = 1 
Query:   22 MFAARAMSKVAVPARAAASRAAVATPKRGMAGGAAPKYTGWEAKVREKLPKDEQVVVAISGFYVGLYVVCKGLSALFSSPKKAEVAAPVVAATTTSSDIPTGSGDDFWQWLEGAGNMEKYLATIDAAE 405
            MFAARAMSK A PARA ASRAA A PKRGMAGGAAP+YTGWEA++REKLPKDE VVVAISGFYVGLYV+ KG+SALFSSP+K EVAAPVVA++ TSSDIP G  D+FWQWLEGAGNMEKYLATID A+
Sbjct:    1 MFAARAMSKAAAPARAVASRAAPAVPKRGMAGGAAPEYTGWEAQIREKLPKDEHVVVAISGFYVGLYVLVKGISALFSSPEK-EVAAPVVASSATSSDIPDGYEDNFWQWLEGAGNMEKYLATIDKAQ 127
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BLAST of mRNA_L-elsbetiae_contig9878.18815.1 vs. uniprot
Match: A0A6U4IDD0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4IDD0_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 5.930e-7
Identity = 45/118 (38.14%), Postives = 64/118 (54.24%), Query Frame = 1 
Query:   52 AVPARAAASRAA-VATPKRGMAGGAAPKYTGWEAK--VREKLPKDEQVVVAISGFYVGLYVVCKGLSALFSSPKKAEVAAPVVAATTTSSDIPTGSGDDFWQWLEGAGNMEKYLATID 396
            A+ ARA  +RAA +  PKR   GGAA +Y        VR+ LP+D  VV+AI G Y  LY+    LS LFS  K          A+T+SS + + + + F +W+   GN+EKY   ++
Sbjct:   12 ALAARAQRARAANMKMPKR-FGGGAAVEYEPGSPDYIVRQYLPEDRHVVMAICGGYFSLYL----LSKLFSGGKXXXXXXXXXPASTSSSGVKSMADEGFAEWIAVDGNIEKYFKAVE 124
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BLAST of mRNA_L-elsbetiae_contig9878.18815.1 vs. uniprot
Match: A0A7R9UII2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UII2_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 7.570e-7
Identity = 42/106 (39.62%), Postives = 56/106 (52.83%), Query Frame = 1 
Query:   97 PKRGMAGGAAPKYT--GWEAKVREKLPKDEQVVVAISGFYVGLYVVCKGLSALFSSPKKAEV---AAPVVAATTTSSDIPTGSGDDFWQWLEGAGNMEKYLATIDA 399
            PKR  AGGA  +Y     +  VR+ LP D+Q+VVAI   Y G+Y+    LS LFS   K E    AAP  AA   +  + +   + F  W+   GN EKYL + +A
Sbjct:   39 PKR-FAGGAPTEYAPGSLDYIVRQYLPHDKQIVVAIVSGYFGIYL----LSTLFSGGSKKEETAEAAPAPAAAPAAGGVLSMEDEGFGDWIMQEGNFEKYLNSFEA 139
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9878.18815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JNR4_9PHAE2.000e-6082.03Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6U4IDD0_9STRA5.930e-738.14Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9UII2_9STRA7.570e-739.62Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9878contigL-elsbetiae_contig9878:132..3581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score205.7
Seed ortholog evalue1.3e-50
Seed eggNOG ortholog2880.D8LBJ5
Hectar predicted targeting categorymitochondrion
EggNOG OGs2CYCG@1,2S3JM@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_003740.1
Exons3
Model size1248
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9878.18815.1prot_L-elsbetiae_contig9878.18815.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9878 972..3560 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817047.5430923-UTR-L-elsbetiae_contig9878:131..9711622817047.5430923-UTR-L-elsbetiae_contig9878:131..971Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9878 132..971 -
1691684007.5698266-UTR-L-elsbetiae_contig9878:131..9711691684007.5698266-UTR-L-elsbetiae_contig9878:131..971Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9878 132..971 -
1622817047.5906675-UTR-L-elsbetiae_contig9878:3560..35811622817047.5906675-UTR-L-elsbetiae_contig9878:3560..3581Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9878 3561..3581 -
1691684007.6296465-UTR-L-elsbetiae_contig9878:3560..35811691684007.6296465-UTR-L-elsbetiae_contig9878:3560..3581Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9878 3561..3581 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817047.557362-CDS-L-elsbetiae_contig9878:971..11021622817047.557362-CDS-L-elsbetiae_contig9878:971..1102Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9878 972..1102 -
1691684007.586014-CDS-L-elsbetiae_contig9878:971..11021691684007.586014-CDS-L-elsbetiae_contig9878:971..1102Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9878 972..1102 -
1622817047.5683255-CDS-L-elsbetiae_contig9878:1592..16861622817047.5683255-CDS-L-elsbetiae_contig9878:1592..1686Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9878 1593..1686 -
1691684007.6083672-CDS-L-elsbetiae_contig9878:1592..16861691684007.6083672-CDS-L-elsbetiae_contig9878:1592..1686Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9878 1593..1686 -
1622817047.5802248-CDS-L-elsbetiae_contig9878:3398..35601622817047.5802248-CDS-L-elsbetiae_contig9878:3398..3560Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9878 3399..3560 -
1691684007.6188786-CDS-L-elsbetiae_contig9878:3398..35601691684007.6188786-CDS-L-elsbetiae_contig9878:3398..3560Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9878 3399..3560 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9878.18815.1

>prot_L-elsbetiae_contig9878.18815.1 ID=prot_L-elsbetiae_contig9878.18815.1|Name=mRNA_L-elsbetiae_contig9878.18815.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=129bp
MFAARAMSKVAVPARAAASRAAVATPKRGMAGGAAPKYTGWEAKVREKLP
KDEQVVVAISGFYVGLYVVCKGLSALFSSPKKAEVAAPVVAATTTSSDIP
TGSGDDFWQWLEGAGNMEKYLATIDAAE*
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mRNA from alignment at L-elsbetiae_contig9878:132..3581-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9878.18815.1 ID=mRNA_L-elsbetiae_contig9878.18815.1|Name=mRNA_L-elsbetiae_contig9878.18815.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3450bp|location=Sequence derived from alignment at L-elsbetiae_contig9878:132..3581- (Laminarionema elsbetiae ELsaHSoW15)
AGAGAGGGAAAGAGAAGGACAATGTTTGCTGCACGTGCCATGTCGAAGGT
GGCGGTGCCCGCAAGGGCAGCTGCCTCGCGAGCGGCGGTCGCGACCCCCA
AGCGCGGGATGGCGGGCGGAGCAGCCCCAAAGTACACCGGCTGGGAGGCC
AAGGTTAGGGAGAAGCTTCCTAAAGACGAGCAGGTGAGTTCGTAGGCGCA
GTGTATTTGATACCTGAGGGTAGTGAGCATCTGCGAATGGAGTACTCGAC
ATAACGTTCCCCGTTTTCTGCTGAAGGCTTTGCTTTGACTGGAAATGTAC
CAGATATGTTACGCATCAGAAGTGGTTATCGGTTCGTTTCGCTTTTGTGC
CCTCCTTTCTTCTGCTGAGTATTGTAAGAGGCGAGGGTAGGAAGGAACAG
CCACCGCTGTTTCCTCGAAATTGGCGAGGATAGGAGCTTGCAATGGACGA
GGAGGTGCTGCTGTGTGGATTGGTTCGTAAGTATCGCGATGAAATGTTTC
TGGTGCGCGCTTGTTATCAAAGAAGTGCACCTCTCTCACCATAATCGCCG
CCAGCAGCACAAACCGGTTCGTCGTTCGTCTACAAACACGTTCGGGTTGG
ACGGGCCCGAACTGGTACAAACACTCTGTAGTACCAGTACACGTTATGTT
GCTTGTGGTTTAAGGCAGGCCGCGGGGGGGTGCATTTCCATTTCACCAGG
CATTTCCCGTCGATTTGAGTGTGTGCTCTGAATTTGTGCTCTGAGAGGGA
CTTGTGCTGGGACGAGTTGTATAGTGTAGCGATTGCAATACAAGCTCTAC
AGCTCTGTGTAGTGTGCGTCTCCAGTCGATTGTACAGCAGCAGTAGTCTA
CCGATGTAGGCTCTACAGCTCTGTCTCCATCGATTGTACAACAGCAGTAG
TCTACCGATGTAGGCTAAATTTACCGGTCGAAAGCTTGGACAAGTTGGAC
ACTTCAACAACCAGCAACTCGAGATAGCTCGTTGTGCATGACTGCTGTGA
CTCTTGAGATCACTGAAACTATTTTTTTATAAAGTCAGAGGTGACGTGTC
GCTGGGGTGAATTATGGATCATTCCCCGACACAACACAAACAGTGGGGGC
GAATTGTACAGCATGGCTGCGTTTGCTCATGCGCCGTTCGACGAGTTTAA
CAGCCTTGTATCTATCCTGCACAAGGCAGCGTCGAACCGCTCATTCACAG
CGGTGGGGCGCAGTTGCATGCACCCATCGATGGCGTTCTATGCATGGTTT
GAGGTTGGCCTGTAACCACGAGAGGCGTGTCCTTCAGTTGGTACCTGCGC
ACAGGTCGTGAGGGTTTTTGTTTGTGCAGACAATGACAGCATTCTTCGAG
TATCGACCTGCGGTTGCTTCCATCCCGCAGCCACTACTGCTGCGCATTCG
AAGACATGTCGATCGATACCCGTTGTCGACTGCTCGCGATGAATTGTGCA
TGCAACCCTCGATATCCATACATATTCGATTTTCATGTCGCGATGCCTTT
TAGTGAGGAGTGCCGCAGACTGCTCTGCTCGAGTAAGTTTGGGGGAAGTG
GTCTATCGACGATGAGTATGCACCACCAACGATAAAAAAAAGTAGATTTT
GCGCCGTGTGGAGCGAAAGGCGCACCGAGGACATTAGCGCTCGCTCCCAC
TGCAAGTAGTCTACGGTTAGTATTGTGCTACTTGTGTCTCCTCTTGTGAG
TGATACTTTCACGTAGACATCTGGACCGCATTCTCGTTTTGTGTTGCATG
TTCGACTTGGATCTTTGTCGGGTACCGCAGAAGCACCACAAAACATATTG
CTTTGTGATGTCTGTGCAGCACTCCTTTGCTCCTATTACACAATGAACCC
CACTGGGTCTCAACACTCCTCTCCTTCTCTGCGTACCGATGGCAGGTGGT
GGTGGCCATCAGCGGGTTCTACGTGGGTTTGTACGTGGTGTGCAAGGGCT
TGTCGGCGTTGTTCTCGTCCCCCAAGAAGGCAGAAGTCGGTGAGGGGCGC
CGCGAGGAGCGTACAGAAGGTCACAAGACCATGTTGCGTCTGATTCCTTT
CGTCACAACACGTCACGTTATTGCTGGCGAAATTTCCAGTTCCAGAGAAA
AACGTCCTTGAGGGTTGTAATGGGTTGGCCAGGCCCGGCACTGCTGCTGC
TGCTGGTGCTGTTGCAACTGCAGAAGTGCGAGTTGGTGTATAACTGTCTC
TCACAGGCGCTGTTAAGATCTAGCAAGATATACTAGGGTTCTAGGGCTGT
GGAAGTGCTGGTATTCGAGACTTGAGTTGCCCAGTTTGTTCAGCAGAATC
GAGGGAGGCAAATGAGGCAATCAACGCTCCAAGCGGTCCGAACCGCCCTT
TGTCTTGCCTCGTGTGCGGCCATGAGTGGCGTGATGTTAGTGTGTCGGCG
AACGGTATTTTGCCGGGCTCGTTCTGTGTAAAATAACCTGGGTCATAACC
CCCTCCCTTTCCGCCCGTGTGCCACGCAGCTGCCCCCGTCGTCGCTGCGA
CCACGACGAGCTCCGACATCCCCACAGGTTCTGGGGACGACTTCTGGCAG
TGGCTCGAGGGTGCAGGAAACATGGAGAAGTACCTCGCGACGATCGACGC
AGCAGAGTAGACAACTTTTTGCAGGGGAGGATAGTTTCCGTCCCTAACTA
CTAAATAAGTACAACAACCGCTGCGTTTTCCTACCTCCTCAAGGGTTTAC
ATGTGGCCATGGCGTGCGGCGCGAGTGATCCGGGGTAAACAGGCGGTCTA
GTTTTTTGCTGGGGGTAACGTGTCCACGGAACGGAGGGGGGGGGAGAGGC
GGTCAAGCTTGACAGCAGGCCTGATTCCATCCGGCAAACTGCAATTCAAG
GCAATTGTTGCTGTCTGGAGGGCAGTGTATAGAAGGATCAGGCTGACCTT
GCTGTAGAGAACGGCGTTACCGATGCTTGCTATTGAGCAACGCACGAGAA
GAGGGGGCTGCAACGCCACACACATGCTGTGTGGTATCGTGTTTCCAAAC
TTCGCAGAAAAGAACATTTTTTTCCGGAACCAAGGGGGCAGGGCTCAACG
CGTACAACAGTAGTACTCGGAGTACTACGATATACGCTGTACTGTACAGT
AGGCATGTGGCACTACAGCAGTAGTGGATTCGAGCGGCAGTCGATCGCTC
CCCGCGACGCCCCTTTTCCGGCCAGTGAAAGTGCCTGGCATCACTCTCTG
ACATTTGGTATTCTGTATCCACCTTAGTGGTTTAGTCTCTCTCTCGCCAA
TCGATCCAATCCTATAGTCTAGCCATTCCGCCCCATTTTTGGGCATTTTT
GGGCTAAAATGCGTCATCCTGTTTTCTCGCCGCTCACGCCACCAACGGAC
GTCTATTTTCGCCGGTGAGTGCATGTGGGCCTCAAGGTTGTGCCCCCCCA
ATTTCAATTCTCGCCGACGCCGGGCGCTGAAAGAGCGGCGACGAACCGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9878:132..3581-

>mRNA_L-elsbetiae_contig9878.18815.1 ID=mRNA_L-elsbetiae_contig9878.18815.1|Name=mRNA_L-elsbetiae_contig9878.18815.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=774bp|location=Sequence derived from alignment at L-elsbetiae_contig9878:132..3581- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTGCTGCACGTGCCATGTCGAAGGTGGCGGTGCCCGCAAGGGCAGC
TGCCTCGCGAGCGGCGGTCGCGACCCCCAAGCGCGGGATGGCGGGCGGAG
CAGCCCCAAAGTACACCGGCTGGGAGGCCAAGGTTAGGGAGAAGCTTCCT
AAAGACGAGCAGATGTTTGCTGCACGTGCCATGTCGAAGGTGGCGGTGCC
CGCAAGGGCAGCTGCCTCGCGAGCGGCGGTCGCGACCCCCAAGCGCGGGA
TGGCGGGCGGAGCAGCCCCAAAGTACACCGGCTGGGAGGCCAAGGTTAGG
GAGAAGCTTCCTAAAGACGAGCAGGTGGTGGTGGCCATCAGCGGGTTCTA
CGTGGGTTTGTACGTGGTGTGCAAGGGCTTGTCGGCGTTGTTCTCGTCCC
CCAAGAAGGCAGAAGTCGGTGGTGGTGGCCATCAGCGGGTTCTACGTGGG
TTTGTACGTGGTGTGCAAGGGCTTGTCGGCGTTGTTCTCGTCCCCCAAGA
AGGCAGAAGTCGCTGCCCCCGTCGTCGCTGCGACCACGACGAGCTCCGAC
ATCCCCACAGGTTCTGGGGACGACTTCTGGCAGTGGCTCGAGGGTGCAGG
AAACATGGAGAAGTACCTCGCGACGATCGACGCAGCAGAGTAGCTGCCCC
CGTCGTCGCTGCGACCACGACGAGCTCCGACATCCCCACAGGTTCTGGGG
ACGACTTCTGGCAGTGGCTCGAGGGTGCAGGAAACATGGAGAAGTACCTC
GCGACGATCGACGCAGCAGAGTAG
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