mRNA_L-elsbetiae_contig9862.18802.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9862.18802.1
Unique NamemRNA_L-elsbetiae_contig9862.18802.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9862.18802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9862contigL-elsbetiae_contig9862:3534..4886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1353
Cds size753
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9862.18802.1prot_L-elsbetiae_contig9862.18802.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9862 3868..4620 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817046.490326-UTR-L-elsbetiae_contig9862:3533..38671622817046.490326-UTR-L-elsbetiae_contig9862:3533..3867Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9862 3534..3867 +
1691684006.8250163-UTR-L-elsbetiae_contig9862:3533..38671691684006.8250163-UTR-L-elsbetiae_contig9862:3533..3867Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9862 3534..3867 +
1622817046.5133092-UTR-L-elsbetiae_contig9862:4620..48861622817046.5133092-UTR-L-elsbetiae_contig9862:4620..4886Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9862 4621..4886 +
1691684006.8458946-UTR-L-elsbetiae_contig9862:4620..48861691684006.8458946-UTR-L-elsbetiae_contig9862:4620..4886Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9862 4621..4886 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817046.5023232-CDS-L-elsbetiae_contig9862:3867..46201622817046.5023232-CDS-L-elsbetiae_contig9862:3867..4620Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9862 3868..4620 +
1691684006.834785-CDS-L-elsbetiae_contig9862:3867..46201691684006.834785-CDS-L-elsbetiae_contig9862:3867..4620Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9862 3868..4620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9862.18802.1

>prot_L-elsbetiae_contig9862.18802.1 ID=prot_L-elsbetiae_contig9862.18802.1|Name=mRNA_L-elsbetiae_contig9862.18802.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=251bp
MQILPKNRAKGLKTPQPPTTNCRARAISRHPQGARLSCLRTPSAAHETPL
QAKETQQQQCKRNRQQSPSTRFATYLAAPAYACLFSLPVYALGPKNTKEA
QTQTQPPTTNHLHRLQLAAPVSSVRVYPCACLPVRLHLGPFRALGLLLPR
SGGRRCRCCWRLGILLQRPLFPAPRAFWRLGPLLTPGACAGGGSSSSSSS
RSASRLRCLGPLALRRLSLLLTPGAYICSSSSSGGGGGASRLRCLGLLLG
*
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mRNA from alignment at L-elsbetiae_contig9862:3534..4886+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9862.18802.1 ID=mRNA_L-elsbetiae_contig9862.18802.1|Name=mRNA_L-elsbetiae_contig9862.18802.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1353bp|location=Sequence derived from alignment at L-elsbetiae_contig9862:3534..4886+ (Laminarionema elsbetiae ELsaHSoW15)
TTGTAGTTAAGGGTTCATTAAAATGTACCTGAATACATGCATGGTATTCC
CTCACCCCCAAAACGTCCACAACGGACATCATCTGGGCGTGTTATACGGT
AAGCACCGAGAAGCGCACTATCCGCTTTGCCTGAACGGGACCCAAGGCAC
GGCCGTTTCAAGACTGAAGGAACCCCACGCACATGGGAGTGTATACTGGT
AATTGGCTCGTTGGGCGTCGCAGGATAGATAGATGTCAACCCCCCCGGTG
TCTGCAAGCAAACGACTCAGTCAGGCCTAATGATCCATATACGTTTTGCT
ACAGCTGTTGGTCTTAACCCATCATAGGGGACACATGCAGATACTTCCAA
AAAACAGAGCAAAGGGACTCAAAACACCACAACCGCCAACAACCAACTGC
AGGGCTAGAGCTATCTCGCGGCACCCCCAGGGGGCCCGCCTGTCTTGTCT
ACGTACACCTTCGGCCGCTCACGAAACCCCCCTTCAAGCCAAGGAAACAC
AACAGCAGCAGTGCAAACGAAATCGCCAACAGTCACCCTCCACACGCTTT
GCCACATACCTAGCTGCACCAGCATATGCCTGTCTGTTTTCTCTGCCTGT
CTACGCCTTAGGGCCAAAGAACACCAAGGAAGCCCAAACGCAAACACAAC
CGCCAACGACCAACCATCTACACAGGCTTCAGCTAGCTGCACCGGTGTCT
TCCGTCCGTGTTTATCCATGTGCCTGCCTGCCTGTCCGTCTACACCTTGG
ACCGTTTCGCGCTCTTGGGCTTCTTCTTCCCCGATCCGGTGGCCGGCGTT
GCCGCTGCTGCTGGCGCCTCGGCATCCTCCTCCAACGACCTCTTTTTCCC
GCCCCCCGCGCTTTTTGGCGACTTGGCCCTCTTCTTACCCCCGGAGCCTG
CGCCGGCGGCGGCAGCAGCAGTAGCAGCAGCAGCAGGAGCGCCAGCCGGC
TCCGGTGTCTTGGGCCCCTTGCTCTTCGGCGACTTAGCCTTCTTCTTACC
CCCGGAGCCTACATCTGCAGCAGCAGCAGCAGCGGCGGCGGCGGCGGCGC
CAGCCGGCTCAGGTGTCTTGGGCTCCTTCTTGGCTGAGCCCTTTCCCTTC
GCACCCCCCGCAGCCGGCTCGGGTGTCCCGGGCCCCTTGCTCTTCTTCTT
GGCCGATCCCTTCGCCTTCACACTCCCGGGCGACTTGCCGCCCTTGTCAT
CACCAGCGGCTGCGGCAGCCGCTGGGGTGGTCGCCGCGACAACATCCTCC
TCCCCCGCCCCCTCCGCTGCTAACGCCTTGGACTTCTTGGTGGGCGTCTT
GGCGCCGCCCTTTCCCTTGGTGGGCGTTGTCCCTGACTTTTCTGTTGCCG
CCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9862:3534..4886+

>mRNA_L-elsbetiae_contig9862.18802.1 ID=mRNA_L-elsbetiae_contig9862.18802.1|Name=mRNA_L-elsbetiae_contig9862.18802.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1506bp|location=Sequence derived from alignment at L-elsbetiae_contig9862:3534..4886+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGATACTTCCAAAAAACAGAGCAAAGGGACTCAAAACACCACAACC
GCCAACAACCAACTGCAGGGCTAGAGCTATCTCGCGGCACCCCCAGGGGG
CCCGCCTGTCTTGTCTACGTACACCTTCGGCCGCTCACGAAACCCCCCTT
CAAGCCAAGGAAACACAACAGCAGCAGTGCAAACGAAATCGCCAACAGTC
ACCCTCCACACGCTTTGCCACATACCTAGCTGCACCAGCATATGCCTGTC
TGTTTTCTCTGCCTGTCTACGCCTTAGGGCCAAAGAACACCAAGGAAGCC
CAAACGCAAACACAACCGCCAACGACCAACCATCTACACAGGCTTCAGCT
AGCTGCACCGGTGTCTTCCGTCCGTGTTTATCCATGTGCCTGCCTGCCTG
TCCGTCTACACCTTGGACCGTTTCGCGCTCTTGGGCTTCTTCTTCCCCGA
TCCGGTGGCCGGCGTTGCCGCTGCTGCTGGCGCCTCGGCATCCTCCTCCA
ACGACCTCTTTTTCCCGCCCCCCGCGCTTTTTGGCGACTTGGCCCTCTTC
TTACCCCCGGAGCCTGCGCCGGCGGCGGCAGCAGCAGTAGCAGCAGCAGC
AGGAGCGCCAGCCGGCTCCGGTGTCTTGGGCCCCTTGCTCTTCGGCGACT
TAGCCTTCTTCTTACCCCCGGAGCCTACATCTGCAGCAGCAGCAGCAGCG
GCGGCGGCGGCGGCGCCAGCCGGCTCAGGTGTCTTGGGCTCCTTCTTGGC
TGAATGCAGATACTTCCAAAAAACAGAGCAAAGGGACTCAAAACACCACA
ACCGCCAACAACCAACTGCAGGGCTAGAGCTATCTCGCGGCACCCCCAGG
GGGCCCGCCTGTCTTGTCTACGTACACCTTCGGCCGCTCACGAAACCCCC
CTTCAAGCCAAGGAAACACAACAGCAGCAGTGCAAACGAAATCGCCAACA
GTCACCCTCCACACGCTTTGCCACATACCTAGCTGCACCAGCATATGCCT
GTCTGTTTTCTCTGCCTGTCTACGCCTTAGGGCCAAAGAACACCAAGGAA
GCCCAAACGCAAACACAACCGCCAACGACCAACCATCTACACAGGCTTCA
GCTAGCTGCACCGGTGTCTTCCGTCCGTGTTTATCCATGTGCCTGCCTGC
CTGTCCGTCTACACCTTGGACCGTTTCGCGCTCTTGGGCTTCTTCTTCCC
CGATCCGGTGGCCGGCGTTGCCGCTGCTGCTGGCGCCTCGGCATCCTCCT
CCAACGACCTCTTTTTCCCGCCCCCCGCGCTTTTTGGCGACTTGGCCCTC
TTCTTACCCCCGGAGCCTGCGCCGGCGGCGGCAGCAGCAGTAGCAGCAGC
AGCAGGAGCGCCAGCCGGCTCCGGTGTCTTGGGCCCCTTGCTCTTCGGCG
ACTTAGCCTTCTTCTTACCCCCGGAGCCTACATCTGCAGCAGCAGCAGCA
GCGGCGGCGGCGGCGGCGCCAGCCGGCTCAGGTGTCTTGGGCTCCTTCTT
GGCTGA
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