mRNA_L-elsbetiae_contig1014.190.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1014.190.1
Unique NamemRNA_L-elsbetiae_contig1014.190.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1014.190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1014contigL-elsbetiae_contig1014:19057..19728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size330
Cds size318
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1014.190.1prot_L-elsbetiae_contig1014.190.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1014 19067..19728 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815245.2898777-UTR-L-elsbetiae_contig1014:19056..190661622815245.2898777-UTR-L-elsbetiae_contig1014:19056..19066Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1014 19057..19066 -
1691682793.0182126-UTR-L-elsbetiae_contig1014:19056..190661691682793.0182126-UTR-L-elsbetiae_contig1014:19056..19066Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1014 19057..19066 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815245.3040094-CDS-L-elsbetiae_contig1014:19066..192101622815245.3040094-CDS-L-elsbetiae_contig1014:19066..19210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1014 19067..19210 -
1691682793.0289857-CDS-L-elsbetiae_contig1014:19066..192101691682793.0289857-CDS-L-elsbetiae_contig1014:19066..19210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1014 19067..19210 -
1622815245.3174767-CDS-L-elsbetiae_contig1014:19554..197281622815245.3174767-CDS-L-elsbetiae_contig1014:19554..19728Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1014 19555..19728 -
1691682793.0382702-CDS-L-elsbetiae_contig1014:19554..197281691682793.0382702-CDS-L-elsbetiae_contig1014:19554..19728Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1014 19555..19728 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1014.190.1

>prot_L-elsbetiae_contig1014.190.1 ID=prot_L-elsbetiae_contig1014.190.1|Name=mRNA_L-elsbetiae_contig1014.190.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
VSFVSGVVPGTAQCSIEAARVDADAGDGLGAFVRPPPPAGCGAAGLVRGA
FPERQDAKGPHHVSEGAPADGRRPRRDRGRRKRRSEDGGGARQLREKRNG
GARQP*
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mRNA from alignment at L-elsbetiae_contig1014:19057..19728-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1014.190.1 ID=mRNA_L-elsbetiae_contig1014.190.1|Name=mRNA_L-elsbetiae_contig1014.190.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig1014:19057..19728- (Laminarionema elsbetiae ELsaHSoW15)
GTTTCCTTCGTCTCGGGGGTCGTCCCCGGCACGGCCCAATGCTCGATCGA
GGCCGCACGCGTCGACGCCGATGCCGGCGATGGGCTCGGCGCCTTCGTCC
GCCCGCCGCCCCCGGCGGGATGTGGCGCGGCCGGTCTCGTACGAGGAGCC
TTCCCTGAACGTCAAGATGCGAAAGTGAGCGGTGAACTGCGACGGATGTG
TTGATTTGTAGCACCCACCGCAGCAGTAGCAGCAAGCAGCTGGAATGGTT
ATATATGCAGCAGGAGCCAGCAGTAGCAATCACTCGCCCAGCGATGCGTC
CGATAGTGCAGCCCTGAATCAGTGGCTTTATTCATCGAGAGCGCTGTTTT
CTCTCTGCTGCGGCAGTTTCCGGCACGAACGTCCATGCCGGGGTTCATCG
TGTGCTGAACGATTTAGACTGCTGCACGATCAGGACTCTGCGCACACACA
CCGCACCAGATAGGAACACGGCCGATCCGCCGTTATTGCCCCCCTCTCTG
CGTGCGCGCGCTGCGCAGGGGCCACATCATGTTTCCGAAGGCGCGCCAGC
CGACGGACGCCGACCTCGCAGAGACAGGGGGCGCCGAAAGAGAAGGAGCG
AGGACGGAGGAGGGGCACGACAGCTGAGAGAAAAGCGCAACGGGGGGGCT
CGCCAGCCTTAGCACAACCGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1014:19057..19728-

>mRNA_L-elsbetiae_contig1014.190.1 ID=mRNA_L-elsbetiae_contig1014.190.1|Name=mRNA_L-elsbetiae_contig1014.190.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig1014:19057..19728- (Laminarionema elsbetiae ELsaHSoW15)
GTTTCCTTCGTCTCGGGGGTCGTCCCCGGCACGGCCCAATGCTCGATCGA
GGCCGCACGCGTCGACGCCGATGCCGGCGATGGGCTCGGCGCCTTCGTCC
GCCCGCCGCCCCCGGCGGGATGTGGCGCGGCCGGTCTCGTACGAGGAGCC
TTCCCTGAACGTCAAGATGCGAAAGTTTCCTTCGTCTCGGGGGTCGTCCC
CGGCACGGCCCAATGCTCGATCGAGGCCGCACGCGTCGACGCCGATGCCG
GCGATGGGCTCGGCGCCTTCGTCCGCCCGCCGCCCCCGGCGGGATGTGGC
GCGGCCGGTCTCGTACGAGGAGCCTTCCCTGAACGTCAAGATGCGAAAGG
GCCACATCATGTTTCCGAAGGCGCGCCAGCCGACGGACGCCGACCTCGCA
GAGACAGGGGGCGCCGAAAGAGAAGGAGCGAGGACGGAGGAGGGGCACGA
CAGCTGAGAGAAAAGCGCAACGGGGGGGCTCGCCAGCCTTAGGGGCCACA
TCATGTTTCCGAAGGCGCGCCAGCCGACGGACGCCGACCTCGCAGAGACA
GGGGGCGCCGAAAGAGAAGGAGCGAGGACGGAGGAGGGGCACGACAGCTG
AGAGAAAAGCGCAACGGGGGGGCTCGCCAGCCTTAG
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