mRNA_L-elsbetiae_contig985.18793.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig985.18793.1
Unique NamemRNA_L-elsbetiae_contig985.18793.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig985.18793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig985contigL-elsbetiae_contig985:4719..5263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons1
Model size547
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817045.6053998-CDS-L-elsbetiae_contig985:4718..50601622817045.6053998-CDS-L-elsbetiae_contig985:4718..5060Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig985 4719..5060 +
1691684006.149992-CDS-L-elsbetiae_contig985:4718..50601691684006.149992-CDS-L-elsbetiae_contig985:4718..5060Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig985 4719..5060 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817045.6192563-UTR-L-elsbetiae_contig985:5060..52631622817045.6192563-UTR-L-elsbetiae_contig985:5060..5263Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig985 5061..5263 +
1691684006.1600091-UTR-L-elsbetiae_contig985:5060..52631691684006.1600091-UTR-L-elsbetiae_contig985:5060..5263Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig985 5061..5263 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig985.18793.1prot_L-elsbetiae_contig985.18793.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig985 4719..5060 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig985.18793.1

>prot_L-elsbetiae_contig985.18793.1 ID=prot_L-elsbetiae_contig985.18793.1|Name=mRNA_L-elsbetiae_contig985.18793.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp
SSTATATSVAAVAAAAAAAAAASPGTAAGREGATPKSSSRRGGGLSPGGK
EVAARGATPSSSPRGSAARKRRSGDGGGGGGGSGGGGVGSTSSPSSPPPG
SASKRARRAPVSG*
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mRNA from alignment at L-elsbetiae_contig985:4719..5263+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig985.18793.1 ID=mRNA_L-elsbetiae_contig985.18793.1|Name=mRNA_L-elsbetiae_contig985.18793.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=545bp|location=Sequence derived from alignment at L-elsbetiae_contig985:4719..5263+ (Laminarionema elsbetiae ELsaHSoW15)
TCGAGCACGGCGACGGCCACGAGTGTGGCGGCGGTGGCGGCGGCGGCGGC
GGCGGCGGCGGCGGCGTCGCCCGGAACGGCGGCGGGTCGAGAAGGGGCAA
CGCCGAAGTCGTCATCGCGCCGGGGCGGCGGCCTCTCCCCCGGAGGAAAA
GAGGTTGCGGCGAGAGGCGCGACGCCTTCTTCTTCTCCCCGCGGCTCGGC
CGCTCGGAAGCGGCGGAGCGGTGATGGCGGCGGCGGCGGCGGCGGCAGCG
GGGGCGGGGGCGTGGGTTCTACTTCGTCGCCATCGTCGCCGCCGCCCGGC
TCGGCCAGCAAGCGGGCGCGGCGCGCTCCGGTCAGCGGGTAGTTATCGAG
GGCTGCCGAGCACGGCGGGCAGACGAAATTCAGTAAACGTGCCATGTATG
CATGTAGACGAGGACGGGACTTTCGTGTGGTGACGGTGGTGTACTTGGTG
GCAGATGTTGGGAGGGCAGGGCAAGCGACGCGGCCGCAGTGGTAGGAGTG
GAGGAGTTGACTACACACACAACCGGGGCCTTGTCTTGTCGCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig985:4719..5263+

>mRNA_L-elsbetiae_contig985.18793.1 ID=mRNA_L-elsbetiae_contig985.18793.1|Name=mRNA_L-elsbetiae_contig985.18793.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig985:4719..5263+ (Laminarionema elsbetiae ELsaHSoW15)
TCGAGCACGGCGACGGCCACGAGTGTGGCGGCGGTGGCGGCGGCGGCGGC
GGCGGCGGCGGCGGCGTCGCCCGGAACGGCGGCGGGTCGAGAAGGGGCAA
CGCCGAAGTCGTCATCGCGCCGGGGCGGCGGCCTCTCCCCCGGAGGAAAA
GAGGTTGCGGCGAGAGGCGCGACGCCTTCTTCTTCTCCCCGCGGCTCGGC
CGCTCGGAAGCGGCGGAGCGGTGATGGCGGCGGCGGCGGCGGCGGCAGCG
GGGGCGGGGGCGTGGGTTCTACTTCGTCGCCATCGTCGCCGCCGCCCGGC
TCGGCCAGCAAGCGGGCGCGGCGCGCTCCGGTCAGCGGGTAGTCGAGCAC
GGCGACGGCCACGAGTGTGGCGGCGGTGGCGGCGGCGGCGGCGGCGGCGG
CGGCGGCGTCGCCCGGAACGGCGGCGGGTCGAGAAGGGGCAACGCCGAAG
TCGTCATCGCGCCGGGGCGGCGGCCTCTCCCCCGGAGGAAAAGAGGTTGC
GGCGAGAGGCGCGACGCCTTCTTCTTCTCCCCGCGGCTCGGCCGCTCGGA
AGCGGCGGAGCGGTGATGGCGGCGGCGGCGGCGGCGGCAGCGGGGGCGGG
GGCGTGGGTTCTACTTCGTCGCCATCGTCGCCGCCGCCCGGCTCGGCCAG
CAAGCGGGCGCGGCGCGCTCCGGTCAGCGGGTAG
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