mRNA_L-elsbetiae_contig9831.18781.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9831.18781.1
Unique NamemRNA_L-elsbetiae_contig9831.18781.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9831.18781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9831contigL-elsbetiae_contig9831:3118..3701 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size586
Cds size327
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817044.5243387-UTR-L-elsbetiae_contig9831:3117..33741622817044.5243387-UTR-L-elsbetiae_contig9831:3117..3374Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9831 3118..3374 +
1691684005.291547-UTR-L-elsbetiae_contig9831:3117..33741691684005.291547-UTR-L-elsbetiae_contig9831:3117..3374Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9831 3118..3374 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817044.5351298-CDS-L-elsbetiae_contig9831:3374..37011622817044.5351298-CDS-L-elsbetiae_contig9831:3374..3701Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9831 3375..3701 +
1691684005.3004067-CDS-L-elsbetiae_contig9831:3374..37011691684005.3004067-CDS-L-elsbetiae_contig9831:3374..3701Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9831 3375..3701 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9831.18781.1prot_L-elsbetiae_contig9831.18781.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9831 3375..3701 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9831.18781.1

>prot_L-elsbetiae_contig9831.18781.1 ID=prot_L-elsbetiae_contig9831.18781.1|Name=mRNA_L-elsbetiae_contig9831.18781.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
MLDDFWPQQSSWWCCCWCAMCWGGGARMRYAAGLHTICLQLLAFVVVALR
RGEDHPAASSSKRPRLYRHAGANCSNRPLYLRCWQLNLTSTMSPNGTKAA
CRISSFTCS
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mRNA from alignment at L-elsbetiae_contig9831:3118..3701+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9831.18781.1 ID=mRNA_L-elsbetiae_contig9831.18781.1|Name=mRNA_L-elsbetiae_contig9831.18781.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=584bp|location=Sequence derived from alignment at L-elsbetiae_contig9831:3118..3701+ (Laminarionema elsbetiae ELsaHSoW15)
AATGATAAGTGCCCAGGGGAACTCGCACATTCTTTGGAACGCAAATGCCT
TTAGTAGATATGTGTGTACAAAGTAACTTTTTGTGAGACGATCGGGGCTC
TCGGGCCGGAAAGCCAAGACGACAGGCCCCCGCTGTCCTTCTCCCTCTCC
ATCTATCTCTCTCACACGACACCGAACCCCTATTGTAGTATGTAAATCAA
ACAGATGCTCTACTTCAAGGTAAAACAAAACAACGCACAATACGTAGCCC
AGGAGAGATGCTCGACGACTTTTGGCCGCAGCAGTCCTCTTGGTGGTGCT
GCTGTTGGTGTGCCATGTGTTGGGGGGGCGGAGCAAGGATGCGTTATGCC
GCAGGATTGCACACGATCTGTTTGCAGCTCTTGGCTTTCGTTGTTGTCGC
CCTACGCAGAGGAGAAGACCATCCTGCCGCGAGCAGCAGCAAGAGACCCC
GGCTCTACCGCCATGCTGGCGCTAACTGCTCCAACCGTCCGTTGTATCTA
CGCTGCTGGCAGCTAAACCTCACCTCGACGATGTCCCCGAACGGCACGAA
AGCTGCGTGCAGGATCTCCTCGTTCACTTGCTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9831:3118..3701+

>mRNA_L-elsbetiae_contig9831.18781.1 ID=mRNA_L-elsbetiae_contig9831.18781.1|Name=mRNA_L-elsbetiae_contig9831.18781.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig9831:3118..3701+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCGACGACTTTTGGCCGCAGCAGTCCTCTTGGTGGTGCTGCTGTTG
GTGTGCCATGTGTTGGGGGGGCGGAGCAAGGATGCGTTATGCCGCAGGAT
TGCACACGATCTGTTTGCAGCTCTTGGCTTTCGTTGTTGTCGCCCTACGC
AGAGGAGAAGACCATCCTGCCGCGAGCAGCAGCAAGAGACCCCGGCTCTA
CCGCCATGCTGGCGCTAACTGCTCCAACCGTCCGTTGTATCTACGCTGCT
GGCAGCTAAACCTCACCTCGACGATGTCCCCGAACGGCACGAAAGCTGCG
TGCAGGATCTCCTCGTTCACTTGCTCCATGCTCGACGACTTTTGGCCGCA
GCAGTCCTCTTGGTGGTGCTGCTGTTGGTGTGCCATGTGTTGGGGGGGCG
GAGCAAGGATGCGTTATGCCGCAGGATTGCACACGATCTGTTTGCAGCTC
TTGGCTTTCGTTGTTGTCGCCCTACGCAGAGGAGAAGACCATCCTGCCGC
GAGCAGCAGCAAGAGACCCCGGCTCTACCGCCATGCTGGCGCTAACTGCT
CCAACCGTCCGTTGTATCTACGCTGCTGGCAGCTAAACCTCACCTCGACG
ATGTCCCCGAACGGCACGAAAGCTGCGTGCAGGATCTCCTCGTTCACTTG
CTCC
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