mRNA_L-elsbetiae_contig983.18779.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig983.18779.1
Unique NamemRNA_L-elsbetiae_contig983.18779.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig983.18779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig983contigL-elsbetiae_contig983:2370..3038 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size293
Cds size201
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig983.18779.1prot_L-elsbetiae_contig983.18779.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig983 2412..2988 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817043.9780295-UTR-L-elsbetiae_contig983:2369..24111622817043.9780295-UTR-L-elsbetiae_contig983:2369..2411Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig983 2370..2411 -
1691684004.8861766-UTR-L-elsbetiae_contig983:2369..24111691684004.8861766-UTR-L-elsbetiae_contig983:2369..2411Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig983 2370..2411 -
1622817044.0229645-UTR-L-elsbetiae_contig983:2988..30381622817044.0229645-UTR-L-elsbetiae_contig983:2988..3038Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig983 2989..3038 -
1691684004.9139452-UTR-L-elsbetiae_contig983:2988..30381691684004.9139452-UTR-L-elsbetiae_contig983:2988..3038Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig983 2989..3038 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817043.9945114-CDS-L-elsbetiae_contig983:2411..25791622817043.9945114-CDS-L-elsbetiae_contig983:2411..2579Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig983 2412..2579 -
1691684004.8957586-CDS-L-elsbetiae_contig983:2411..25791691684004.8957586-CDS-L-elsbetiae_contig983:2411..2579Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig983 2412..2579 -
1622817044.0081048-CDS-L-elsbetiae_contig983:2955..29881622817044.0081048-CDS-L-elsbetiae_contig983:2955..2988Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig983 2956..2988 -
1691684004.9047337-CDS-L-elsbetiae_contig983:2955..29881691684004.9047337-CDS-L-elsbetiae_contig983:2955..2988Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig983 2956..2988 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig983.18779.1

>prot_L-elsbetiae_contig983.18779.1 ID=prot_L-elsbetiae_contig983.18779.1|Name=mRNA_L-elsbetiae_contig983.18779.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=67bp
MLLVLSRSSVQEFEGAYSGLARGNMESGASSPSCCSRFERRVRCCRSMLV
SMGGGDDCWRCFEQSV*
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mRNA from alignment at L-elsbetiae_contig983:2370..3038-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig983.18779.1 ID=mRNA_L-elsbetiae_contig983.18779.1|Name=mRNA_L-elsbetiae_contig983.18779.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=669bp|location=Sequence derived from alignment at L-elsbetiae_contig983:2370..3038- (Laminarionema elsbetiae ELsaHSoW15)
ATGGATCACGTCCGAGGCGACTTCATTGAGTGGAACGCCGCTAACGTTTG
ATGTTGCTGGTTCTGAGTCGAAGCTCTGTTCAGGTATGAGATGAAGCCTT
CGTGGTGCTTGTTCCGTGTTTGCGACCTTGCTATACTCCTTCCGGTGGTC
GCTTGCTCCGCTGGATTGCTTCGTGTTTGTGAATTGCTGGCAGGTGTTCT
GCTTGGGGTCGATTTGTGCACTTTCACCGATTGGTTTGGTATCGCGACCT
AAACGCCATGGCGTTGCTTTGCCGCTTGCTACGCTAGCCTTCTAGCTAGG
GCAGGAAAAGTGTGTTGACATTCCACGAAGCAATAACGGCTTCTTTGGGG
CGCGTGTGTAAAGCTTATACAAGACTACATACTTCTACAATGTAGCTCAG
CGTGACTCTGGTCTGTGTTGAGGTTTGTGTTTCGTTTCATCGGCCGCGTG
CTTTCGCAGGAATTTGAAGGAGCATACTCGGGATTGGCTCGTGGAAATAT
GGAGAGCGGTGCCTCATCGCCCTCTTGCTGCAGTCGGTTTGAGCGGCGTG
TGAGGTGCTGCAGGAGTATGCTGGTTTCTATGGGAGGTGGCGATGATTGC
TGGAGGTGCTTTGAACAGTCTGTGTGAAAACTGGGCAGCTGTACAGAGAA
CTGGTAACCTTCCGAGTGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig983:2370..3038-

>mRNA_L-elsbetiae_contig983.18779.1 ID=mRNA_L-elsbetiae_contig983.18779.1|Name=mRNA_L-elsbetiae_contig983.18779.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=402bp|location=Sequence derived from alignment at L-elsbetiae_contig983:2370..3038- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGCTGGTTCTGAGTCGAAGCTCTGTTCAGATGTTGCTGGTTCTGAG
TCGAAGCTCTGTTCAGGAATTTGAAGGAGCATACTCGGGATTGGCTCGTG
GAAATATGGAGAGCGGTGCCTCATCGCCCTCTTGCTGCAGTCGGTTTGAG
CGGCGTGTGAGGTGCTGCAGGAGTATGCTGGTTTCTATGGGAGGTGGCGA
TGATTGCTGGAGGTGCTTTGAACAGTCTGTGTGAGAATTTGAAGGAGCAT
ACTCGGGATTGGCTCGTGGAAATATGGAGAGCGGTGCCTCATCGCCCTCT
TGCTGCAGTCGGTTTGAGCGGCGTGTGAGGTGCTGCAGGAGTATGCTGGT
TTCTATGGGAGGTGGCGATGATTGCTGGAGGTGCTTTGAACAGTCTGTGT
GA
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