mRNA_L-elsbetiae_contig9826.18775.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9826.18775.1
Unique NamemRNA_L-elsbetiae_contig9826.18775.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9826.18775.1 vs. uniprot
Match: A0A6H5K4D7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D7_9PHAE)

HSP 1 Score: 285 bits (729), Expect = 3.450e-83
Identity = 179/302 (59.27%), Postives = 209/302 (69.21%), Query Frame = 3 
Query:  306 KRGGVRLVIAALETSPCLRRLSMAGCQLGVDGGQAIIAAIGSDREQFRLLDLDLANNSLGAGCGGLLGVALRRNETLTRLSLRANGLGPEGGASLAAGLARNCGMLKELVVADNRLGPGVATLVAATMHGGTSQCLRGFGYRAAPKTIQQRHRQDGGSREVCDDGDAAPPSEEGQQSALSPEKFDGGTKETQS--RPTSAVGKRSSRANGGNAQPVSFATTRHSSLGLQRTSALASPASR--TNGSRPSALAGEAGVGVMGSGSNEFQLLSTSDGAPTTADDDAAAFEEDLGRPQTAGTASG 1199
            +RGG RL+IAALETS  LRRL++AGCQLGVDGGQA+IAAIGS R++FRLLDLDLANNSLGAGCG  L VALRRN+TLTRLSLRANGLGPEGG SLAAGLA NCG+LKE+VVADNRLGP VATLVAATM GGTS+CLRGFGYR AP T+ Q   Q           D APP             F+ G    QS  RP+  + + S   + G+   V+ A+ R S   LQRTSAL  P +R   N +      G A  G MG G+N+ ++L+ ++ +P TA    AA EEDLGRPQTAGTASG
Sbjct:  595 RRGGARLIIAALETSAHLRRLNLAGCQLGVDGGQAMIAAIGSGRDKFRLLDLDLANNSLGAGCGDSLAVALRRNKTLTRLSLRANGLGPEGGTSLAAGLASNCGVLKEVVVADNRLGPRVATLVAATMRGGTSECLRGFGYRPAP-TLSQPQPQPSDHLH-----DTAPP-------------FEKGADNDQSIPRPSRPLQRYSGENSCGSNPRVAAASVRESLSSLQRTSALEPPTARGRLNSTALPTTVGAA-EGTMGPGTNDLEVLARNNSSPITA---TAAIEEDLGRPQTAGTASG 873
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BLAST of mRNA_L-elsbetiae_contig9826.18775.1 vs. uniprot
Match: D8LGB3_ECTSI (Hypothetical leucine rich repeat and MORN motif protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGB3_ECTSI)

HSP 1 Score: 277 bits (709), Expect = 1.000e-80
Identity = 174/302 (57.62%), Postives = 210/302 (69.54%), Query Frame = 3 
Query:  306 KRGGVRLVIAALETSPCLRRLSMAGCQLGVDGGQAIIAAIGSDREQFRLLDLDLANNSLGAGCGGLLGVALRRNETLTRLSLRANGLGPEGGASLAAGLARNCGMLKELVVADNRLGPGVATLVAATMHGGTSQCLRGFGYRAAPKTIQQRHRQDGGSREVCDDGDAAPPSEEGQQSALSPEKFDGGTKETQSRPTS-AVGKRSSRANGGNAQP-VSFATTRHSSLGLQRTSAL--ASPASRTNGSRPSALAGEAGVGVMGSGSNEFQLLSTSDGAPTTADDDAAAFEEDLGRPQTAGTASG 1199
            +RGG RL+IAALETS  LRRL++AGCQLGVDGGQA+IAAIGS R++FRL+DLDLA+NSLGAGCG  L VALRRN+TLTRLS+RANGLGPEGG +LAAGLA NCG+LK++VVADNRLGP VATLVAATM GGTS+CLRGFGYR AP  + +  +Q             APP             F+ G    QS P S    +R S  N   + P V+ A+ R S   LQRTSAL  ++   R N + P+   G AG G MG G+N+ ++L+ ++ +P TA    AA EEDLGRPQTAGTASG
Sbjct:  539 RRGGARLIIAALETSAHLRRLNLAGCQLGVDGGQAMIAAIGSGRDKFRLVDLDLASNSLGAGCGDPLAVALRRNKTLTRLSVRANGLGPEGGTALAAGLASNCGILKQVVVADNRLGPRVATLVAATMRGGTSECLRGFGYRPAP-ALSELQQQPSDHLHAT-----APP-------------FEKGADTDQSIPGSPGPSQRYSGENSCGSNPRVAAASMRESLSSLQRTSALEPSTARGRLNSTAPTTTVGAAG-GTMGPGTNDLEVLTRNNSSPITA---TAAIEEDLGRPQTAGTASG 817
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9826.18775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K4D7_9PHAE3.450e-8359.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGB3_ECTSI1.000e-8057.62Hypothetical leucine rich repeat and MORN motif pr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9826contigL-elsbetiae_contig9826:4882..7100 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score281.6
Seed ortholog evalue4.6e-73
Seed eggNOG ortholog2880.D8LGB3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of ryanodine-sensitive calcium-release channel activity
EggNOG OGsCOG4642@1,KOG0231@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1546
Cds size942
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9826.18775.1prot_L-elsbetiae_contig9826.18775.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9826 5226..6840 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817043.698355-UTR-L-elsbetiae_contig9826:4881..52251622817043.698355-UTR-L-elsbetiae_contig9826:4881..5225Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9826 4882..5225 -
1691684004.6874616-UTR-L-elsbetiae_contig9826:4881..52251691684004.6874616-UTR-L-elsbetiae_contig9826:4881..5225Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9826 4882..5225 -
1622817043.738624-UTR-L-elsbetiae_contig9826:6840..71001622817043.738624-UTR-L-elsbetiae_contig9826:6840..7100Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9826 6841..7100 -
1691684004.7284403-UTR-L-elsbetiae_contig9826:6840..71001691684004.7284403-UTR-L-elsbetiae_contig9826:6840..7100Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9826 6841..7100 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817043.7130322-CDS-L-elsbetiae_contig9826:5225..58741622817043.7130322-CDS-L-elsbetiae_contig9826:5225..5874Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9826 5226..5874 -
1691684004.707611-CDS-L-elsbetiae_contig9826:5225..58741691684004.707611-CDS-L-elsbetiae_contig9826:5225..5874Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9826 5226..5874 -
1622817043.7263832-CDS-L-elsbetiae_contig9826:6547..68401622817043.7263832-CDS-L-elsbetiae_contig9826:6547..6840Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9826 6548..6840 -
1691684004.7178702-CDS-L-elsbetiae_contig9826:6547..68401691684004.7178702-CDS-L-elsbetiae_contig9826:6547..6840Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9826 6548..6840 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9826.18775.1

>prot_L-elsbetiae_contig9826.18775.1 ID=prot_L-elsbetiae_contig9826.18775.1|Name=mRNA_L-elsbetiae_contig9826.18775.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=314bp
MKNVLFSSLLAYVREKRGGVRLVIAALETSPCLRRLSMAGCQLGVDGGQA
IIAAIGSDREQFRLLDLDLANNSLGAGCGGLLGVALRRNETLTRLSLRAN
GLGPEGGASLAAGLARNCGMLKELVVADNRLGPGVATLVAATMHGGTSQC
LRGFGYRAAPKTIQQRHRQDGGSREVCDDGDAAPPSEEGQQSALSPEKFD
GGTKETQSRPTSAVGKRSSRANGGNAQPVSFATTRHSSLGLQRTSALASP
ASRTNGSRPSALAGEAGVGVMGSGSNEFQLLSTSDGAPTTADDDAAAFEE
DLGRPQTAGTASG*
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mRNA from alignment at L-elsbetiae_contig9826:4882..7100-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9826.18775.1 ID=mRNA_L-elsbetiae_contig9826.18775.1|Name=mRNA_L-elsbetiae_contig9826.18775.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2219bp|location=Sequence derived from alignment at L-elsbetiae_contig9826:4882..7100- (Laminarionema elsbetiae ELsaHSoW15)
AAGGAACCCTTCTTGTGACCACAAGTAAATACTCTGGCAAGATGTCCTCG
TGACAGGGAGCCCATCGAGCACTGGGAATAAATGTGAAGAAAAAGAAACA
TATATACGAAGTAGGAGTATAATATATAAGCTCACGGTTGCTGTACTCGC
AATATCTCATCGACCGAACGACCTAGATGCGTGAAGCTATGAATGCAGTC
TTCCTCCACTTAAGGAGTACCCCAACATTGCTGGTATGACCGACGATAAC
TCCCCTTAAAATGAAAAATGTTCTCTTCTCTTCACTCCTTGCTTACGTTC
GCGAGAAAAGGGGCGGGGTGAGACTCGTCATAGCTGCACTGGAGACCTCC
CCGTGCCTCAGGCGCCTCAGCATGGCTGGGTGCCAACTTGGGGTAGACGG
AGGACAGGCGATTATCGCGGCCATCGGATCCGATCGAGAACAGTTCCGCT
TACTCGACCTTGACCTCGCGAACAACTCCCTCGGCGCGGGTTGTGGGGGT
TTGCTGGGTGTGGCGCTGCGCCGAAATGAGACCCTTACGCGGCTCAGTCT
CAGGTGCGCGAGAAGCGCTTTTGCTGAACGATCGACCGATAGACATCGAC
AAATACCTGGGGATGGTTGGTGTATTGTAGATGCGAGCGGTGTGATCTGG
TGATACGATCAAAATCGCGGATATGATTCATCAACTATACGGAACCATCA
GCATACCAACAGCCTTGGAAGAAATTATACTTTATCCATCCTGCATTACC
TCTTTCCCCTTAGGGCATCCCGAAATTCTGTGAGGTATTTAGACTATTAC
CTGCGAAGTTGGGACCTGGATCGAAATGTCTCACTCTCCTCAGCAAAATG
GCTATTTAATGTTGTTAGTACGTGGTTCTTCGCACTCCGCCAAGAATAAG
GCAACGCAGAGTGTGTAGCGGTGCTCAGGGGCGGTTCCCCGCCCTTTGAG
TATAAAACTTGTGGCTAGCTATCAGAGATGTCAAAGACAAATATTCCCGC
GGCCAGTCAGTTTGGTGCAAAAAAGTGGGGTGAGAAAATCAGCTGGAAAA
TTGTGATATGTATCCCCGTGAAACAGAGCCTGAGTGGCACAAAATGCAAA
CCGCCCAGTTCCCTTCCCCGTACAGGGACGCCACAGCCAACGACCTGGCT
GCTACATAAGAAATGTGGTTAACGAGTGCACCCCTTTCCTCGCCCCCGTC
TCCCGCCGCATGTCATGGGTTTGTAGAGCTAACGGCCTCGGGCCAGAGGG
GGGTGCTTCTCTCGCCGCCGGCCTTGCCCGGAATTGTGGGATGTTAAAAG
AGCTCGTCGTAGCTGATAACCGTTTGGGACCCGGCGTAGCGACTCTAGTC
GCTGCCACCATGCATGGTGGAACATCGCAGTGTCTGCGCGGCTTCGGCTA
CCGCGCAGCACCAAAAACCATCCAACAGCGACATCGTCAAGATGGAGGAT
CGCGAGAGGTCTGTGATGATGGCGATGCCGCACCGCCTTCCGAGGAAGGC
CAACAATCCGCTTTGTCGCCCGAGAAATTTGATGGCGGTACCAAGGAAAC
GCAATCTCGGCCAACATCTGCTGTAGGCAAACGTTCTAGTCGTGCGAATG
GTGGTAACGCCCAGCCTGTTTCCTTCGCAACGACAAGGCATTCATCGTTG
GGCCTTCAACGAACGTCGGCTCTTGCATCGCCTGCGTCGCGCACGAACGG
TTCTAGACCATCAGCATTAGCAGGGGAAGCAGGAGTAGGGGTGATGGGTT
CGGGGAGTAATGAGTTCCAACTGTTGTCGACGAGTGATGGTGCTCCAACC
ACAGCTGATGATGATGCGGCAGCTTTCGAGGAAGATCTCGGACGGCCCCA
AACAGCCGGAACTGCGAGCGGGTAGCGAGTGGTACCAGTACAAGGAGACA
TCGTTGTTTTCAAAATCTCTGTGTGTGCGTGTGTGTGTCCTTCCCATTTA
TTTTGGCGACAGTCCCCCCAAGTGGAGACGTGTAATACACCTTGCGGTGT
ACTTGTCTGTACAACTAGAACCAACCGGGATATCTAGATCCAACTTTATC
CAGATGTCATCAGTCTACTTTCGGGGATAAAGACTAGGGGGACTTTGGCA
AGTATGTACATATCTCGACTTATGTGTATCTAGATACTAGGAGTACCATC
CTTATCCTCTATAGAGATGCCCTTCTCATCCTCGCTCCTCGGCTGCATGT
GGCACAAATAAACCCGCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9826:4882..7100-

>mRNA_L-elsbetiae_contig9826.18775.1 ID=mRNA_L-elsbetiae_contig9826.18775.1|Name=mRNA_L-elsbetiae_contig9826.18775.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1884bp|location=Sequence derived from alignment at L-elsbetiae_contig9826:4882..7100- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAAAATGTTCTCTTCTCTTCACTCCTTGCTTACGTTCGCGAGAAAAG
GGGCGGGGTGAGACTCGTCATAGCTGCACTGGAGACCTCCCCGTGCCTCA
GGCGCCTCAGCATGGCTGGGTGCCAACTTGGGGTAGACGGAGGACAGGCG
ATTATCGCGGCCATCGGATCCGATCGAGAACAGTTCCGCTTACTCGACCT
TGACCTCGCGAACAACTCCCTCGGCGCGGGTTGTGGGGGTTTGCTGGGTG
TGGCGCTGCGCCGAAATGAGACCCTTACGCGGCTCAGTCTCAGATGAAAA
ATGTTCTCTTCTCTTCACTCCTTGCTTACGTTCGCGAGAAAAGGGGCGGG
GTGAGACTCGTCATAGCTGCACTGGAGACCTCCCCGTGCCTCAGGCGCCT
CAGCATGGCTGGGTGCCAACTTGGGGTAGACGGAGGACAGGCGATTATCG
CGGCCATCGGATCCGATCGAGAACAGTTCCGCTTACTCGACCTTGACCTC
GCGAACAACTCCCTCGGCGCGGGTTGTGGGGGTTTGCTGGGTGTGGCGCT
GCGCCGAAATGAGACCCTTACGCGGCTCAGTCTCAGAGCTAACGGCCTCG
GGCCAGAGGGGGGTGCTTCTCTCGCCGCCGGCCTTGCCCGGAATTGTGGG
ATGTTAAAAGAGCTCGTCGTAGCTGATAACCGTTTGGGACCCGGCGTAGC
GACTCTAGTCGCTGCCACCATGCATGGTGGAACATCGCAGTGTCTGCGCG
GCTTCGGCTACCGCGCAGCACCAAAAACCATCCAACAGCGACATCGTCAA
GATGGAGGATCGCGAGAGGTCTGTGATGATGGCGATGCCGCACCGCCTTC
CGAGGAAGGCCAACAATCCGCTTTGTCGCCCGAGAAATTTGATGGCGGTA
CCAAGGAAACGCAATCTCGGCCAACATCTGCTGTAGGCAAACGTTCTAGT
CGTGCGAATGGTGGTAACGCCCAGCCTGTTTCCTTCGCAACGACAAGGCA
TTCATCGTTGGGCCTTCAACGAACGTCGGCTCTTGCATCGCCTGCGTCGC
GCACGAACGGTTCTAGACCATCAGCATTAGCAGGGGAAGCAGGAGTAGGG
GTGATGGGTTCGGGGAGTAATGAGTTCCAACTGTTGTCGACGAGTGATGG
TGCTCCAACCACAGCTGATGATGATGCGGCAGCTTTCGAGGAAGATCTCG
GACGGCCCCAAACAGCCGGAACTGCGAGCGGGTAGAGCTAACGGCCTCGG
GCCAGAGGGGGGTGCTTCTCTCGCCGCCGGCCTTGCCCGGAATTGTGGGA
TGTTAAAAGAGCTCGTCGTAGCTGATAACCGTTTGGGACCCGGCGTAGCG
ACTCTAGTCGCTGCCACCATGCATGGTGGAACATCGCAGTGTCTGCGCGG
CTTCGGCTACCGCGCAGCACCAAAAACCATCCAACAGCGACATCGTCAAG
ATGGAGGATCGCGAGAGGTCTGTGATGATGGCGATGCCGCACCGCCTTCC
GAGGAAGGCCAACAATCCGCTTTGTCGCCCGAGAAATTTGATGGCGGTAC
CAAGGAAACGCAATCTCGGCCAACATCTGCTGTAGGCAAACGTTCTAGTC
GTGCGAATGGTGGTAACGCCCAGCCTGTTTCCTTCGCAACGACAAGGCAT
TCATCGTTGGGCCTTCAACGAACGTCGGCTCTTGCATCGCCTGCGTCGCG
CACGAACGGTTCTAGACCATCAGCATTAGCAGGGGAAGCAGGAGTAGGGG
TGATGGGTTCGGGGAGTAATGAGTTCCAACTGTTGTCGACGAGTGATGGT
GCTCCAACCACAGCTGATGATGATGCGGCAGCTTTCGAGGAAGATCTCGG
ACGGCCCCAAACAGCCGGAACTGCGAGCGGGTAG
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