mRNA_L-elsbetiae_contig9825.18774.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9825.18774.1
Unique NamemRNA_L-elsbetiae_contig9825.18774.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9825.18774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9825contigL-elsbetiae_contig9825:3267..4447 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size854
Cds size828
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9825.18774.1prot_L-elsbetiae_contig9825.18774.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9825 3267..4422 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817043.641019-CDS-L-elsbetiae_contig9825:3266..39261622817043.641019-CDS-L-elsbetiae_contig9825:3266..3926Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9825 3267..3926 -
1691684004.6481547-CDS-L-elsbetiae_contig9825:3266..39261691684004.6481547-CDS-L-elsbetiae_contig9825:3266..3926Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9825 3267..3926 -
1622817043.6532826-CDS-L-elsbetiae_contig9825:4254..44221622817043.6532826-CDS-L-elsbetiae_contig9825:4254..4422Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9825 4255..4422 -
1691684004.660445-CDS-L-elsbetiae_contig9825:4254..44221691684004.660445-CDS-L-elsbetiae_contig9825:4254..4422Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9825 4255..4422 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817043.6669304-UTR-L-elsbetiae_contig9825:4422..44471622817043.6669304-UTR-L-elsbetiae_contig9825:4422..4447Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9825 4423..4447 -
1691684004.67195-UTR-L-elsbetiae_contig9825:4422..44471691684004.67195-UTR-L-elsbetiae_contig9825:4422..4447Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9825 4423..4447 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9825.18774.1

>prot_L-elsbetiae_contig9825.18774.1 ID=prot_L-elsbetiae_contig9825.18774.1|Name=mRNA_L-elsbetiae_contig9825.18774.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=276bp
MERRPPSTTRSRIPGGYGNYPGRDPESPPPESSGGGGGRGRKKRTPAPWG
GLFQGKEDVALPTAPWSIGAPQDGRYEEPVPPQSQHLVRASAAGAATGGG
YSSIATAGGRYGSPPPSSSGYRSSSLSPPAAATRRRASPLVANAPRLTVI
PAPVTHGAVQATTTSTRGLQHQRQQQRGPSPMGGGAGLSKWGSWGISHGG
DERKNSDIDDNGGGSSKLTSEPVAERTGLLFSAARPEVVGFGGGKTGGDG
NPLTGTFSRERSAPGSGFTGGRGGAR
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mRNA from alignment at L-elsbetiae_contig9825:3267..4447-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9825.18774.1 ID=mRNA_L-elsbetiae_contig9825.18774.1|Name=mRNA_L-elsbetiae_contig9825.18774.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1181bp|location=Sequence derived from alignment at L-elsbetiae_contig9825:3267..4447- (Laminarionema elsbetiae ELsaHSoW15)
AGACAACGCTGACACGAACGAGAACATGGAGCGGCGGCCGCCGTCGACTA
CGCGGTCTCGGATCCCAGGCGGCTATGGCAACTACCCGGGCCGAGATCCG
GAATCGCCGCCGCCGGAGAGTTCGGGTGGTGGCGGAGGGAGAGGGCGGAA
AAAACGTACACCAGCTCCATGGGGGGGTCTATTCCAAGGAAAGGTGCGCT
GTGAGAACATGCTCGAGCGTTGGCACGTCGCTCGTCGGTTTTCCGCGTGT
CCACCGTGCGTAGTGGAATGTGGAATCTTGACAAAATGAGAGGGTCTATA
CTTTTGAACACTCCATCAAACTATTTGGGATGTCATGACCCGTGGCACGG
GAGTGCGACGCATCTATCATGCGATCTAAGGGTAGAGGCTGGCGATACAT
ATGACACTCCCCACCTGGGTGGCAGCATGGTCCGGAGATCGCATGCTGTC
CTGCTCCCAGTACTCGAAGCAGGTGATAAATCGCACAACAACCCCGCTTG
CTACCCCCCGCCTCCCCACAGGAGGACGTCGCGCTACCGACGGCGCCCTG
GTCGATCGGAGCTCCGCAAGACGGAAGATACGAGGAACCAGTACCCCCTC
AAAGCCAGCACTTGGTTCGGGCTTCAGCAGCAGGAGCAGCGACTGGCGGC
GGCTACTCCAGCATTGCTACGGCGGGAGGGAGATACGGATCACCGCCACC
GTCGTCATCAGGGTACCGATCATCGTCCCTGTCACCGCCGGCGGCGGCCA
CGAGACGCCGCGCTTCGCCGCTGGTTGCGAACGCTCCCCGCTTGACAGTC
ATCCCGGCCCCGGTGACGCATGGAGCTGTCCAAGCTACGACGACATCAAC
GAGGGGGTTGCAGCATCAGCGGCAGCAGCAGCGAGGACCGTCACCGATGG
GAGGAGGGGCAGGGCTATCGAAGTGGGGTTCGTGGGGCATCAGCCACGGC
GGTGACGAGCGCAAAAATAGCGACATAGACGACAACGGCGGCGGCAGCAG
CAAGCTGACCTCGGAGCCGGTGGCAGAGAGAACGGGTCTGCTATTTTCGG
CTGCGCGCCCCGAAGTAGTGGGTTTCGGCGGTGGCAAGACCGGCGGCGAT
GGGAATCCCCTGACCGGGACCTTCTCGCGAGAGCGATCGGCACCAGGAAG
CGGATTTACCGGAGGACGAGGAGGAGCAAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9825:3267..4447-

>mRNA_L-elsbetiae_contig9825.18774.1 ID=mRNA_L-elsbetiae_contig9825.18774.1|Name=mRNA_L-elsbetiae_contig9825.18774.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1656bp|location=Sequence derived from alignment at L-elsbetiae_contig9825:3267..4447- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGCGGCGGCCGCCGTCGACTACGCGGTCTCGGATCCCAGGCGGCTA
TGGCAACTACCCGGGCCGAGATCCGGAATCGCCGCCGCCGGAGAGTTCGG
GTGGTGGCGGAGGGAGAGGGCGGAAAAAACGTACACCAGCTCCATGGGGG
GGTCTATTCCAAGGAAAGATGGAGCGGCGGCCGCCGTCGACTACGCGGTC
TCGGATCCCAGGCGGCTATGGCAACTACCCGGGCCGAGATCCGGAATCGC
CGCCGCCGGAGAGTTCGGGTGGTGGCGGAGGGAGAGGGCGGAAAAAACGT
ACACCAGCTCCATGGGGGGGTCTATTCCAAGGAAAGGAGGACGTCGCGCT
ACCGACGGCGCCCTGGTCGATCGGAGCTCCGCAAGACGGAAGATACGAGG
AACCAGTACCCCCTCAAAGCCAGCACTTGGTTCGGGCTTCAGCAGCAGGA
GCAGCGACTGGCGGCGGCTACTCCAGCATTGCTACGGCGGGAGGGAGATA
CGGATCACCGCCACCGTCGTCATCAGGGTACCGATCATCGTCCCTGTCAC
CGCCGGCGGCGGCCACGAGACGCCGCGCTTCGCCGCTGGTTGCGAACGCT
CCCCGCTTGACAGTCATCCCGGCCCCGGTGACGCATGGAGCTGTCCAAGC
TACGACGACATCAACGAGGGGGTTGCAGCATCAGCGGCAGCAGCAGCGAG
GACCGTCACCGATGGGAGGAGGGGCAGGGCTATCGAAGTGGGGTTCGTGG
GGCATCAGCCACGGCGGTGACGAGCGCAAAAATAGCGACATAGACGACAA
CGGCGGCGGCAGCAGCAAGCTGACCTCGGAGCCGGTGGCAGAGAGAACGG
GTCTGCTATTTTCGGCTGCGCGCCCCGAAGTAGTGGGTTTCGGCGGTGGC
AAGACCGGCGGCGATGGGAATCCCCTGACCGGGACCTTCTCGCGAGAGCG
ATCGGCACCAGGAAGCGGATTTACCGGAGGACGAGGAGGAGCAAGGGAGG
ACGTCGCGCTACCGACGGCGCCCTGGTCGATCGGAGCTCCGCAAGACGGA
AGATACGAGGAACCAGTACCCCCTCAAAGCCAGCACTTGGTTCGGGCTTC
AGCAGCAGGAGCAGCGACTGGCGGCGGCTACTCCAGCATTGCTACGGCGG
GAGGGAGATACGGATCACCGCCACCGTCGTCATCAGGGTACCGATCATCG
TCCCTGTCACCGCCGGCGGCGGCCACGAGACGCCGCGCTTCGCCGCTGGT
TGCGAACGCTCCCCGCTTGACAGTCATCCCGGCCCCGGTGACGCATGGAG
CTGTCCAAGCTACGACGACATCAACGAGGGGGTTGCAGCATCAGCGGCAG
CAGCAGCGAGGACCGTCACCGATGGGAGGAGGGGCAGGGCTATCGAAGTG
GGGTTCGTGGGGCATCAGCCACGGCGGTGACGAGCGCAAAAATAGCGACA
TAGACGACAACGGCGGCGGCAGCAGCAAGCTGACCTCGGAGCCGGTGGCA
GAGAGAACGGGTCTGCTATTTTCGGCTGCGCGCCCCGAAGTAGTGGGTTT
CGGCGGTGGCAAGACCGGCGGCGATGGGAATCCCCTGACCGGGACCTTCT
CGCGAGAGCGATCGGCACCAGGAAGCGGATTTACCGGAGGACGAGGAGGA
GCAAGG
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