mRNA_L-elsbetiae_contig9824.18773.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9824.18773.1
Unique NamemRNA_L-elsbetiae_contig9824.18773.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9824.18773.1 vs. uniprot
Match: D8LEN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEN2_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 6.840e-40
Identity = 75/94 (79.79%), Postives = 82/94 (87.23%), Query Frame = 2 
Query:    2 VVFGMLALVTMLLVDLTSFPSLTGWSRGSLLAVQNWPREERHAFAWVAAARVFLVVCWAVWMLCRIYISGSLLRKLPYVPYRYQQLSYRFFGLQ 283
            VVFG+L L  MLLVDLTSFP+LTG  RGSLLAVQNWP  +RHAFA VA+AR+F+V+ WAVWMLCRIYISG LLRKLPYVP RYQQLSYRFF LQ
Sbjct:  637 VVFGVLTLALMLLVDLTSFPTLTGMDRGSLLAVQNWPESQRHAFAGVASARIFMVMLWAVWMLCRIYISGCLLRKLPYVPNRYQQLSYRFFALQ 730
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BLAST of mRNA_L-elsbetiae_contig9824.18773.1 vs. uniprot
Match: A0A6H5KRH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRH3_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 4.440e-39
Identity = 74/94 (78.72%), Postives = 81/94 (86.17%), Query Frame = 2 
Query:    2 VVFGMLALVTMLLVDLTSFPSLTGWSRGSLLAVQNWPREERHAFAWVAAARVFLVVCWAVWMLCRIYISGSLLRKLPYVPYRYQQLSYRFFGLQ 283
            VVFG+L L  MLLVDLTSFP+LT   RGSLLAVQNWP  +RHAFA VA+AR+F+V+ WAVWMLCRIYISG LLRKLPYVP RYQQLSYRFF LQ
Sbjct:  803 VVFGVLTLALMLLVDLTSFPTLTAMDRGSLLAVQNWPESQRHAFAGVASARIFMVMLWAVWMLCRIYISGCLLRKLPYVPNRYQQLSYRFFALQ 896
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BLAST of mRNA_L-elsbetiae_contig9824.18773.1 vs. uniprot
Match: D8LEN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEN4_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 4.340e-34
Identity = 67/110 (60.91%), Postives = 83/110 (75.45%), Query Frame = 2 
Query:    2 VVFGMLALVTMLLVDLTSFPSLTGWSRGSLLAVQNWPREERHAFAWVAAARVFLVVCWAVWMLCRIYISGSLLRKLPYVPYRYQQLSYRFFGLQVCMSYVCMSVFMAVRI 331
            VVFG+  +  MLLVD  SFP++ G  RGSLLAVQNWP  ++ AF  VA+AR+F+V+ WAVWMLCR+Y+SG LLRKLPYVP RYQQLSYRFFGLQ  +  +  + F   R+
Sbjct:  327 VVFGVWTMACMLLVDRASFPTVIGIDRGSLLAVQNWPESQQQAFELVASARIFMVMLWAVWMLCRMYVSGCLLRKLPYVPNRYQQLSYRFFGLQAILLGIVYTTFTLWRL 436
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BLAST of mRNA_L-elsbetiae_contig9824.18773.1 vs. uniprot
Match: D8LRA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRA0_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 2.220e-22
Identity = 55/111 (49.55%), Postives = 69/111 (62.16%), Query Frame = 2 
Query:    2 VVFGMLALVTMLLVDLTSFPSLTGWSRGSLLAVQNWPREERHAFAWVAAARVFLVVCWAVWMLCRIYISGSLLRKLPYVPYRYQQLSYRFFGLQVCMSYVCMSVFMAVRIS 334
            V  G+ AL+ MLLVDL  FPSL GW  GSL+A+ NWP  +  AF  VA A + L+  W      RI  +G LLR+LPYVP R+QQLSY FFGLQV    +  +V    R++
Sbjct:  764 VALGVAALMFMLLVDLALFPSLAGWDHGSLVAMDNWPHAQLVAFTLVAVAEMVLMAMWXXXXXXRITSAGRLLRQLPYVPTRFQQLSYTFFGLQVLFLVLVFAVLALARLA 874
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BLAST of mRNA_L-elsbetiae_contig9824.18773.1 vs. uniprot
Match: A0A6H5JIC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIC3_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 4.150e-20
Identity = 52/95 (54.74%), Postives = 62/95 (65.26%), Query Frame = 2 
Query:    2 VVFGMLALVTMLLVDLTSFPSLTGWSRGSLLAVQNWPREERHAFAWVAAARVFLVVCWAVWMLCRIYISGSLLRKLPYVPYRYQQLSYRFFGLQV 286
            V  G+ AL+ MLLVDL  FPSL GW  GSL+A+ NWP  ++ AFA VA A +            RI  +G LLR+LPYVP R+QQLSY FFGLQV
Sbjct: 1009 VALGVAALMFMLLVDLALFPSLAGWDHGSLVAMNNWPHAQQVAFALVAVAEMAXXXXXXXXXXXRITSAGRLLRQLPYVPTRFQQLSYTFFGLQV 1103
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BLAST of mRNA_L-elsbetiae_contig9824.18773.1 vs. uniprot
Match: D7G0U2_ECTSI (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U2_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 2.640e-10
Identity = 35/63 (55.56%), Postives = 44/63 (69.84%), Query Frame = 2 
Query:  143 AAARVFLVVCWAVWMLCRIYISGSLLRKLPYVPYRYQQLSYRFFGLQVCMSYVCMSVFMAVRI 331
            AAAR+ +V  W VW+L  +Y SG LLRKLPYVP R++QLSYRFFGLQ  +  V   +F   R+
Sbjct:  568 AAARILMVRVWVVWILFCMYTSGRLLRKLPYVPNRFRQLSYRFFGLQAILLGVVYVMFALWRL 630
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BLAST of mRNA_L-elsbetiae_contig9824.18773.1 vs. uniprot
Match: A0A7S2DGJ3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DGJ3_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.600e-5
Identity = 27/75 (36.00%), Postives = 43/75 (57.33%), Query Frame = 2 
Query:   53 SFPSL-TGWSRGSLLAVQNWPREERHAFAWVAAARVFLVVCWAVWMLCRIYISGSLLRKLPYVPYRYQQLSYRFF 274
            S+P+L +G     LL V +W    +  +       +FL+  W VW++  +  +G +LR+LPY+  R+QQL YRFF
Sbjct:   53 SYPALYSGRDTSPLLCVADWGYTLQVMYVTSGLLVLFLLTVWFVWLIACVTNTGRVLRRLPYLQTRFQQLPYRFF 127
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BLAST of mRNA_L-elsbetiae_contig9824.18773.1 vs. uniprot
Match: A0A7S2GJP9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GJP9_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 6.630e-5
Identity = 27/75 (36.00%), Postives = 43/75 (57.33%), Query Frame = 2 
Query:   53 SFPSL-TGWSRGSLLAVQNWPREERHAFAWVAAARVFLVVCWAVWMLCRIYISGSLLRKLPYVPYRYQQLSYRFF 274
            S+P+L +G     LL V +W    +  +       +FL+  W VW++  +  +G +LR+LPY+  R+QQL YRFF
Sbjct:  175 SYPALYSGRDTSPLLCVADWGYTLQVMYVTSGLLVLFLLTVWFVWLIACVTNTGRVLRRLPYLQTRFQQLPYRFF 249
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9824.18773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LEN2_ECTSI6.840e-4079.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRH3_9PHAE4.440e-3978.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEN4_ECTSI4.340e-3460.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRA0_ECTSI2.220e-2249.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JIC3_9PHAE4.150e-2054.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0U2_ECTSI2.640e-1055.56Lipase_3 domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S2DGJ3_9STRA1.600e-536.00Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2GJP9_9STRA6.630e-536.00Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9824contigL-elsbetiae_contig9824:1494..3842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size458
Cds size429
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9824.18773.1prot_L-elsbetiae_contig9824.18773.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9824 1494..3814 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817043.5808835-CDS-L-elsbetiae_contig9824:1493..16321622817043.5808835-CDS-L-elsbetiae_contig9824:1493..1632Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9824 1494..1632 +
1691684004.6150317-CDS-L-elsbetiae_contig9824:1493..16321691684004.6150317-CDS-L-elsbetiae_contig9824:1493..1632Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9824 1494..1632 +
1622817043.591994-CDS-L-elsbetiae_contig9824:3524..38141622817043.591994-CDS-L-elsbetiae_contig9824:3524..3814Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9824 3525..3814 +
1691684004.6278515-CDS-L-elsbetiae_contig9824:3524..38141691684004.6278515-CDS-L-elsbetiae_contig9824:3524..3814Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9824 3525..3814 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817043.6035535-UTR-L-elsbetiae_contig9824:3814..38421622817043.6035535-UTR-L-elsbetiae_contig9824:3814..3842Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9824 3815..3842 +
1691684004.6377604-UTR-L-elsbetiae_contig9824:3814..38421691684004.6377604-UTR-L-elsbetiae_contig9824:3814..3842Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9824 3815..3842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9824.18773.1

>prot_L-elsbetiae_contig9824.18773.1 ID=prot_L-elsbetiae_contig9824.18773.1|Name=mRNA_L-elsbetiae_contig9824.18773.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
GGVWYAGAGDDAARGPHELSEPDRLEPRVAAGGAKLAAGGTARLRVGGGC
ARFPGGLLGGVDAVQDLHLRQSSQEASVRAVPLPAAVVQVLRSAGMHVVC
MYVCIHGRADLFKCILCYFVLKTHAVCLSRGRARNPCKDVML*
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mRNA from alignment at L-elsbetiae_contig9824:1494..3842+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9824.18773.1 ID=mRNA_L-elsbetiae_contig9824.18773.1|Name=mRNA_L-elsbetiae_contig9824.18773.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2349bp|location=Sequence derived from alignment at L-elsbetiae_contig9824:1494..3842+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGGTGTTTGGTATGCTGGCGCTGGTGACGATGCTGCTCGTGGACCTCA
CGAGCTTTCCGAGCCTGACCGGCTGGAGCCGCGGGTCGCTGCTGGCGGTG
CAAAACTGGCCGCGGGAGGAACGGCACGCCTTCGCGTGGGTGAGAAATCT
CTTTTGGGGTTTACTGCTGTAGTCTATACATACCTACATATGTACATATG
CCCCGCAGAAGGGGTTCCAGCCCCCCCCCCCCCCTCCCCCCCTGTGTGAC
CCCAGTTGGGTCGTCTAGCTATTTAATCGTAGTTGGAGGAAGGGGGGCAG
TGGGGCAGACGACGAATAAATAAGCCAACAATGGGAGGAGAAGAAAAAAA
AAACTTACTCTGTGGTGGCTGGCGATGCGGCGGGGACTCGTATCCCATGC
TTATACATCATGATACTTTTCCGTTCGTACTACTAGCTTTCGGCGACAAT
GACTTGACTCGAGTGTGCGTCTAAATTAGATTAGTGGTTGTTTGCCCCTT
GTTTTGTTAAGGGCTGCATTTTGTTTTTTGTGCTGTTTTTTTTTTTTGCT
GTTTTTTTTAGGGGGGGCTGCGATGCGGAGAGCGGACGCAGGTTTTGCTT
TTTGTCGGCGTGGCGGCGAAATGTCAAATTTTAGGCGATTGGTTGTTCGT
GGCAATTTTTGCGCCCGCCGCATATCCCGACGCCAGAGGTCTTGTTTGGC
GTGTGTCTTATTTATTCAGCTCTGTTTTGTGTTGAGACCTGGTTATGTAC
TCCGCTGGGCAGTTGCTGAAGCGGGACAAGCTTGACAGTACGGTGTGTTT
TTTCTCTCTGGCGTGCCGGTAAATTGCAGAACAGAAACGGCTCCTCCAGA
GGTCACGACGACCACCTCCCCCCCGTGAACATTTTTCGTGTTTTTTTGTC
TCGATTATATTCAAGGTCTTGATGACGTTAACCGTAACGCATTTTCGACA
TCCAGGAGCGTGTTGTATGTGTGTTTATTCTTAAGTTTTTTCTCCTTGAA
CATTTTTCGTGTTTTTTGTCTCGATTATATTCAAGGTCTTGATGACCATA
ACCGTAACGAATTTTGGATATCCAGGAGCGTGTTTGCGTGTATAATTCTG
TCATAAGTTTTTTCTTTGCGGCTCTGTATTCGGATGTAAGAGACACTTCT
TGTGGGGTGGGAGGAGATGATGGGATTATTTGTTCGAAAACCATAAATAA
ATGAGGGTGTGCGTTTTTTTCTTCCTCCCTCGCACCGACGACGATTCTGG
CGGCCCGTCTTGTTGCATGTGTCCTTGGGCTGTGTGCACACAGCAGCAGT
AGTAGCGCTCCTGTCTGTTTTGGTCGTCCCAACGGCATGATTTACTGCCT
GTCCATCGCATCGAGCTTCGCGTCGCCGTGCCTTCGGAGGGATCGAAACG
TTTTTTTTATTGTCGAAGACAACAACAGCAACAACCAACCATTTGAACCC
CATATCGAGTCTTTGCTCTAGTATGGGTTAGGTTCCATCTTTGATTCTTT
GTTTTATTTTTAACAACAACAACAACAACAACAACAACAACAGCAGCAGC
AGCAGCAGCAGGGAGGAGAAGACCGCACGATCCGACCCAACCCAACCAGA
CCAGACTAGACCCCTGATAAGATCCAATGGATCGATCTGATTATGACCGT
TACTCCTTTTGTCTTTTTTGGTCGATCGCATATCGGATTGGCTTGCCTCT
CTCGTCCGCGTCGGGGGGCACGCGATTGGCGCAACTCACATCTATTTTGT
CCTTTAATTTGTTATCGATCCGGTTGGCGCAAACTATTGCCCCCATATCT
GTGGGGATCCGATCGGCGCAACTCAACTATTTTGTCCATCCACATGGGTC
GCGACCCGATTGATTGGCTTACAGTATAGCTCTCTTGGCACCCCCCATCA
GTGTCTCCTGCTGTTGTTTTGTTTCACCGCCCCATCACCGGCTGTATTTG
CTGCACCGAAAACTGCACCGCAACTGACTGCGCGGCATGCACTGTTGTTG
TCGCAAACAAACTCTGCACACTGCGGGGCAGGTGGCGGCTGCGCGCGTTT
TCCTGGTGGTCTGCTGGGCGGTGTGGATGCTGTGCAGGATTTACATCTCA
GGCAGTCTTCTCAGGAAGCTTCCGTACGTGCCGTACCGCTACCAGCAGCT
GTCGTACAGGTTCTTCGGTCTGCAGGTATGCATGTCGTATGTATGTATGT
CTGTATTCATGGCCGTGCGGATCTCTTCAAATGTATTTTGTGTTATTTCG
TGCTGAAGACACATGCAGTGTGCTTATCCAGAGGGCGTGCGCGCAACCCT
TGCAAAGACGTGATGTTGTGATATGTCCGCGTCGCTCGCGGGTCGATGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9824:1494..3842+

>mRNA_L-elsbetiae_contig9824.18773.1 ID=mRNA_L-elsbetiae_contig9824.18773.1|Name=mRNA_L-elsbetiae_contig9824.18773.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig9824:1494..3842+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGGTGTTTGGTATGCTGGCGCTGGTGACGATGCTGCTCGTGGACCTCA
CGAGCTTTCCGAGCCTGACCGGCTGGAGCCGCGGGTCGCTGCTGGCGGTG
CAAAACTGGCCGCGGGAGGAACGGCACGCCTTCGCGTGGGGTGGTGTTTG
GTATGCTGGCGCTGGTGACGATGCTGCTCGTGGACCTCACGAGCTTTCCG
AGCCTGACCGGCTGGAGCCGCGGGTCGCTGCTGGCGGTGCAAAACTGGCC
GCGGGAGGAACGGCACGCCTTCGCGTGGGTGGCGGCTGCGCGCGTTTTCC
TGGTGGTCTGCTGGGCGGTGTGGATGCTGTGCAGGATTTACATCTCAGGC
AGTCTTCTCAGGAAGCTTCCGTACGTGCCGTACCGCTACCAGCAGCTGTC
GTACAGGTTCTTCGGTCTGCAGGTATGCATGTCGTATGTATGTATGTCTG
TATTCATGGCCGTGCGGATCTCTTCAAATGTATTTTGTGTTATTTCGTGC
TGAAGACACATGCAGTGTGCTTATCCAGAGGGCGTGCGCGCAACCCTTGC
AAAGACGTGATGTTGTGAGTGGCGGCTGCGCGCGTTTTCCTGGTGGTCTG
CTGGGCGGTGTGGATGCTGTGCAGGATTTACATCTCAGGCAGTCTTCTCA
GGAAGCTTCCGTACGTGCCGTACCGCTACCAGCAGCTGTCGTACAGGTTC
TTCGGTCTGCAGGTATGCATGTCGTATGTATGTATGTCTGTATTCATGGC
CGTGCGGATCTCTTCAAATGTATTTTGTGTTATTTCGTGCTGAAGACACA
TGCAGTGTGCTTATCCAGAGGGCGTGCGCGCAACCCTTGCAAAGACGTGA
TGTTGTGA
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