mRNA_L-elsbetiae_contig9821.18771.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9821.18771.1
Unique NamemRNA_L-elsbetiae_contig9821.18771.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9821.18771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9821contigL-elsbetiae_contig9821:3837..6518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-03_004890.3
Exons2
Model size1000
Cds size999
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817043.3925626-CDS-L-elsbetiae_contig9821:3837..40731622817043.3925626-CDS-L-elsbetiae_contig9821:3837..4073Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9821 3838..4073 -
1691684004.4754815-CDS-L-elsbetiae_contig9821:3837..40731691684004.4754815-CDS-L-elsbetiae_contig9821:3837..4073Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9821 3838..4073 -
1622817043.4073024-CDS-L-elsbetiae_contig9821:5755..65181622817043.4073024-CDS-L-elsbetiae_contig9821:5755..6518Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9821 5756..6518 -
1691684004.486988-CDS-L-elsbetiae_contig9821:5755..65181691684004.486988-CDS-L-elsbetiae_contig9821:5755..6518Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9821 5756..6518 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9821.18771.1prot_L-elsbetiae_contig9821.18771.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9821 3838..6518 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9821.18771.1

>prot_L-elsbetiae_contig9821.18771.1 ID=prot_L-elsbetiae_contig9821.18771.1|Name=mRNA_L-elsbetiae_contig9821.18771.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=333bp
EGLESTTAEGAVSRREHGGDPCAESARAEASAAGPGGGGGKDPAADADAP
AGAAAGAAAGGGADTGATAVADAATGAATSSPRLGAVVVAGAAGVGVGSG
DPVESGVPEAAVQTPPHTPPGGPATSPASTADTTAGSSSSTGSSSSTGTS
SGTGRNGSLFQRNQAPSRQPKSAGVNLLEFAASIMRGGGGGGSSGGSSSG
STRSSSGGGGGGGVSNRINRGVRGAGGGWSGGRVIVPGGRGAMSSSSSSR
GGGPGGPLGRFEPTSPRGGGPGAGTGPGGGGGGHYLTYGAVLAETVELAL
GRGRAKAATAAARGQGGNHTGSGAVGGPAEVGG
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mRNA from alignment at L-elsbetiae_contig9821:3837..6518-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9821.18771.1 ID=mRNA_L-elsbetiae_contig9821.18771.1|Name=mRNA_L-elsbetiae_contig9821.18771.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2682bp|location=Sequence derived from alignment at L-elsbetiae_contig9821:3837..6518- (Laminarionema elsbetiae ELsaHSoW15)
GAGGGCCTGGAGTCGACGACGGCGGAGGGTGCAGTCAGCCGGCGGGAACA
CGGCGGCGATCCGTGCGCCGAGAGCGCGCGCGCGGAAGCCTCCGCGGCGG
GGCCAGGAGGAGGAGGAGGGAAAGACCCCGCGGCTGATGCCGACGCCCCT
GCCGGCGCCGCTGCCGGCGCCGCTGCCGGTGGAGGTGCCGATACCGGTGC
CACTGCCGTTGCCGATGCCGCTACCGGTGCCGCGACATCGTCTCCCCGGC
TGGGTGCCGTCGTCGTGGCCGGTGCCGCCGGCGTGGGCGTCGGCAGCGGC
GACCCCGTGGAGAGCGGGGTGCCCGAGGCGGCAGTGCAGACACCGCCGCA
CACGCCGCCAGGGGGGCCGGCTACCTCCCCCGCAAGCACCGCCGATACGA
CCGCTGGGAGCAGCAGCAGCACCGGCAGCAGCAGCAGCACCGGCACCAGC
AGCGGCACCGGCAGGAACGGCTCCCTCTTCCAGCGGAACCAGGCCCCGAG
CCGCCAGCCGAAGAGCGCCGGGGTGAACCTCCTCGAGTTCGCCGCTTCCA
TCATGCGAGGCGGCGGCGGCGGCGGCAGCAGCGGCGGCAGTAGCTCGGGC
TCGACCCGCAGCAGTAGCGGCGGCGGCGGCGGCGGCGGCGTCTCAAACCG
GATCAACAGGGGAGTTCGTGGGGCCGGTGGCGGATGGAGCGGCGGGAGAG
TCATCGTGCCCGGCGGGCGGGGAGCCATGTCGTCCAGCAGCTCGAGCAGG
GGAGGAGGGCCAGGTGCGATAAAAACCGTGAGGTTTTGTTTTCAATTAAT
GTGTACAAATGTCAGCAGTCTCCGCCCACTCTGCGGAGAAGTCGTTCCAG
AGGGACTGTTGCAGCCGTACTAACCCCCTGTTTGCCCATCCCAGATATGT
TCGCACAAAACCCGTAAATAGTTCAATTAAAACCGGTAATAATCTTTTTC
TTTTGTGTGTATTTATCGAGGAGATAGTGTTTTCGTATTTTCTCACAGGA
ATTTTGGTGAGGATTTCAATTTCTCGAAGCAATTTCTCGAAAGAACATGG
GCAAGTTCTTCTCTCGAGGGAGAGTGGGCTTGAACTCCCCTTTTGGCGTT
TTGGGAGTTGCGGAGGAACAAAAAAAAATGTTCACTCTGAGTTTAGTGCA
GGGAAAAAGAAGGTTTACAGAATGCACCTCAAAAAGAAAATAATGTGCCA
ACGGAGTCAGAGCCTAAGGGAGAGCCAGTCCTCTGAGAAGGAAGTCACGC
CGCAGGGGGGGCGCCGCAGGGGTGGGGAGGGGGGCTGGCTGTGCTTGCTT
GTCCTCGGCAAGTCTGGCTACGTTGCGACCGTTGCGGATGTTGCTCCTAC
GATTCGCTCCGTCAGCGACGTGTGTTTGCTGTCGAGCGCACACGGTTTTC
ACCGCCAATTTGGTTTTTCTCCTGGGCGTAAATGGAAAGCCGCGTCGGTG
GGTGGGGGGGGGGGCTACCAGTGGAAGACCAGTGGGTATGTTAGGTTTGT
CTCCTCTTGAGTTTGGCTTCAGGATCAGGATTACGGACAGGTTTTTATGT
GGTTTGGGCAGTGTTGGCGGCGGCCTTACTCCGCCCGTCTTTTGCCCTCT
GCCCACAAGTCTTGTCGCCAAAATATTCCATCTCTGTCTGTGCCTACCCC
CTCTCTTCCCGCCGTTTATTTCTCCCTCTCCTTATACCGTAATCATGCGA
AGGTTCGCACCCCCGTGTTCGCATTTTTCTAAAGCGTATTTCCCCACAAT
CAGGAGGGTGCGCGAACACTAACTGATACCTCTCTGGAAAGCCCCCGACG
AGACGTTTCGAAAACCACCCTTTTCGGCAGTGGTACCTACCCTCCTGGTT
GCGGAGAAATACGCTATAGAGAAACGCTCACACGGGGGTGCGAACCTTCG
CATGATTACGGTATGTATAAGGAGAGGGAAAAAAAAAAGTCTTCCTGCAG
CCGGGCCCCCAATCCTGAAAAAGCGGCTGTGGGGGATTCTTAACTCCATT
TCCTAGAGAAATACCCCCCCCCCCCCCCCCCGCTGCCCCCACAGTTTATT
TTTGAGAACTGGGGGCCCTATTGCAGGAAGCCTATAATACCTTCTCCGCA
CATACATCATACATGTGTACTTCTTTCCAACACCCCCCTCTTCCTCGCTC
TCTCCCCCTTCCTCCACCTCTCTCGCCCCCCAACCCCCCGCCCTGCCTGC
ACGCCGGGACCCCCCGCTCTCTACATGTTTTGCGCCAAAAGTATGTAGGC
CTCGGAACATTATTTTGAAGAGTGCTTTTTTTTTTCGCGTTGTTTTCCGT
CCTGTGGAAAGAGAGCCCAGAACCGGCCTTGCTTTTTTTCACGAGCCTAA
CTCCAATTGTTTATGGACACGGGCATTCGATTTCGGAAGGCGCCCTCGCC
CCCCGCCCTACCTAACTTCGGAACCCCCTGCGGAACCCCCTACAGGCGGG
CCACTGGGGCGGTTCGAACCGACATCGCCAAGAGGAGGGGGTCCCGGCGC
TGGCACCGGCCCCGGCGGTGGGGGTGGGGGGCACTACCTCACCTACGGGG
CCGTCCTGGCGGAGACGGTCGAGTTGGCCCTCGGCAGAGGGCGAGCGAAG
GCGGCAACCGCGGCAGCCCGCGGGCAAGGCGGCAACCACACGGGAAGCGG
TGCCGTAGGGGGCCCCGCGGAGGTTGGAGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9821:3837..6518-

>mRNA_L-elsbetiae_contig9821.18771.1 ID=mRNA_L-elsbetiae_contig9821.18771.1|Name=mRNA_L-elsbetiae_contig9821.18771.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1998bp|location=Sequence derived from alignment at L-elsbetiae_contig9821:3837..6518- (Laminarionema elsbetiae ELsaHSoW15)
GAGGGCCTGGAGTCGACGACGGCGGAGGGTGCAGTCAGCCGGCGGGAACA
CGGCGGCGATCCGTGCGCCGAGAGCGCGCGCGCGGAAGCCTCCGCGGCGG
GGCCAGGAGGAGGAGGAGGGAAAGACCCCGCGGCTGATGCCGACGCCCCT
GCCGGCGCCGCTGCCGGCGCCGCTGCCGGTGGAGGTGCCGATACCGGTGC
CACTGCCGTTGCCGATGCCGCTACCGGTGCCGCGACATCGTCTCCCCGGC
TGGGTGCCGTCGTCGTGGCCGGTGCCGCCGGCGTGGGCGTCGGCAGCGGC
GACCCCGTGGAGAGCGGGGTGCCCGAGGCGGCAGTGCAGACACCGCCGCA
CACGCCGCCAGGGGGGCCGGCTACCTCCCCCGCAAGCACCGCCGATACGA
CCGCTGGGAGCAGCAGCAGCACCGGCAGCAGCAGCAGCACCGGCACCAGC
AGCGGCACCGGCAGGAACGGCTCCCTCTTCCAGCGGAACCAGGCCCCGAG
CCGCCAGCCGAAGAGCGCCGGGGTGAACCTCCTCGAGTTCGCCGCTTCCA
TCATGCGAGGCGGCGGCGGCGGCGGCAGCAGCGGCGGCAGTAGCTCGGGC
TCGACCCGCAGCAGTAGCGGCGGCGGCGGCGGCGGCGGCGTCTCAAACCG
GATCAACAGGGGAGTTCGTGGGGCCGGTGGCGGATGGAGCGGCGGGAGAG
TCATCGTGCCCGGCGGGCGGGGAGCCATGTCGTCCAGCAGCTCGAGCAGG
GGAGGAGGGCCAGGAGGGCCTGGAGTCGACGACGGCGGAGGGTGCAGTCA
GCCGGCGGGAACACGGCGGCGATCCGTGCGCCGAGAGCGCGCGCGCGGAA
GCCTCCGCGGCGGGGCCAGGAGGAGGAGGAGGGAAAGACCCCGCGGCTGA
TGCCGACGCCCCTGCCGGCGCCGCTGCCGGCGCCGCTGCCGGTGGAGGTG
CCGATACCGGTGCCACTGCCGTTGCCGATGCCGCTACCGGTGCCGCGACA
TCGTCTCCCCGGCTGGGTGCCGTCGTCGTGGCCGGTGCCGCCGGCGTGGG
CGTCGGCAGCGGCGACCCCGTGGAGAGCGGGGTGCCCGAGGCGGCAGTGC
AGACACCGCCGCACACGCCGCCAGGGGGGCCGGCTACCTCCCCCGCAAGC
ACCGCCGATACGACCGCTGGGAGCAGCAGCAGCACCGGCAGCAGCAGCAG
CACCGGCACCAGCAGCGGCACCGGCAGGAACGGCTCCCTCTTCCAGCGGA
ACCAGGCCCCGAGCCGCCAGCCGAAGAGCGCCGGGGTGAACCTCCTCGAG
TTCGCCGCTTCCATCATGCGAGGCGGCGGCGGCGGCGGCAGCAGCGGCGG
CAGTAGCTCGGGCTCGACCCGCAGCAGTAGCGGCGGCGGCGGCGGCGGCG
GCGTCTCAAACCGGATCAACAGGGGAGTTCGTGGGGCCGGTGGCGGATGG
AGCGGCGGGAGAGTCATCGTGCCCGGCGGGCGGGGAGCCATGTCGTCCAG
CAGCTCGAGCAGGGGAGGAGGGCCAGGCGGGCCACTGGGGCGGTTCGAAC
CGACATCGCCAAGAGGAGGGGGTCCCGGCGCTGGCACCGGCCCCGGCGGT
GGGGGTGGGGGGCACTACCTCACCTACGGGGCCGTCCTGGCGGAGACGGT
CGAGTTGGCCCTCGGCAGAGGGCGAGCGAAGGCGGCAACCGCGGCAGCCC
GCGGGCAAGGCGGCAACCACACGGGAAGCGGTGCCGTAGGGGGCCCCGCG
GAGGTTGGAGGGGCGGGCCACTGGGGCGGTTCGAACCGACATCGCCAAGA
GGAGGGGGTCCCGGCGCTGGCACCGGCCCCGGCGGTGGGGGTGGGGGGCA
CTACCTCACCTACGGGGCCGTCCTGGCGGAGACGGTCGAGTTGGCCCTCG
GCAGAGGGCGAGCGAAGGCGGCAACCGCGGCAGCCCGCGGGCAAGGCGGC
AACCACACGGGAAGCGGTGCCGTAGGGGGCCCCGCGGAGGTTGGAGGG
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