prot_L-elsbetiae_contig982.18769.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig982.18769.1
Unique Name	prot_L-elsbetiae_contig982.18769.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	368

Homology

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BLAST of mRNA_L-elsbetiae_contig982.18769.1 vs. uniprot
Match: A0A6H5KRH1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRH1_9PHAE)

HSP 1 Score: 367 bits (942), Expect = 4.650e-122
Identity = 217/387 (56.07%), Postives = 253/387 (65.37%), Query Frame = 0

Query:    1 APSHPSPRSEGLLAALSTMVNDNLGVFRATTATMVVGSALTVCFLVYRRGLHGFDSAAQVPASYFERRKRVRVRIAKVAEAAVVLSNPNGAPKGDHGRYSTTTPSLMTSATVPLSVLLHAEHITLPRRLLRLPPRSLLPSAGGIDAATFTLRLCGVSVAEEGVMLARKELVKPLVGRYCDAELLYRERRPRGSRSLPPPFG------RQASLLIAVCHIHRRRGVLWRDIFQPRLDPTAGFGEHLLSEGLAILREEVWWAPGYN---TPS----LGSADATTEASAQ-------ARSTGRDARVIRDGDSSEQPFPALKRLLEDREKFVTAEKSAELARRGVWGSPRHEDADRDKVGDRDGLSSTGLK---ERSAAVVRAFVAFFGR 364
            AP+ P   +E +LA +S  +NDNL +FRA TATM+VGSAL + FLVYRRG+HGF SAAQVPASYFERRKR+RVRIAK++EA       +G PK   GR+ T   ++ T+      VLLHAEHITLPRRLLRLPPRSLLPSAGG DAATFTLRLCGVS   EGV+LAR ELVKPLVG YCDAELL+RE+R   S S     G       Q S  +AVCHIHRRRGVLWRD+ Q R+DP AGFGE+L+S+GLA LREE WWA       TP+      +A  T+  SAQ       A STG        GD SEQPFPALKRLLEDRE  V AE  A+ A RG+W  P+       + G RD  ++   K   E  A + R     FGR
Sbjct:   31 APAQPPRITERVLATISIKINDNLRLFRAGTATMMVGSALAISFLVYRRGVHGFRSAAQVPASYFERRKRLRVRIAKISEAPAAPPTFDGPPKDGRGRFDTAGVAIPTTRPKGSDVLLHAEHITLPRRLLRLPPRSLLPSAGGSDAATFTLRLCGVSAESEGVLLARNELVKPLVGFYCDAELLFREQRSAASPSATAGVGFGVGATEQVSGPVAVCHIHRRRGVLWRDMLQSRIDPKAGFGEYLISQGLARLREEQWWAAADRNGLTPAPAVVTAAARPTSAVSAQTHRHRTGAASTGEG------GDDSEQPFPALKRLLEDREILVAAEGDAKRASRGLWDLPQRGG----EGGGRDSAAAGRAKSLIEGVAGIARVLTGLFGR 407

[Close]

BLAST of mRNA_L-elsbetiae_contig982.18769.1 vs. uniprot
Match: A0A835YR19_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR19_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.290e-6
Identity = 42/120 (35.00%), Postives = 56/120 (46.67%), Query Frame = 0

Query:   15 ALSTMVNDNLGVFRATTATMVVGSALTVCFLVYRRGLHGFDSAAQVPASYFERRKRVRVRIAKVAEAAVVLSNPNGAPKGDHGRYSTTTPSLMTSATVPLSVLLHAEHITLPRRLLRLPP 134
            A+S  VN +L  +R T AT+++G A  V F+V+RRG+ GF S   +P  YF  R+R+ VR+  VA         +G                         V L  EH T  RRLLRL P
Sbjct:   28 AVSESVNAHLRAYRMTMATLIIGGAAGVAFVVHRRGVRGFRSPLDLPEGYFVNRRRIGVRV--VAAEGHATDRKDGLQM----------------------VTLRLEHFTPARRLLRLLP 123

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig982.18769.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig982.18769.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5KRH1_9PHAE	4.650e-122	56.07	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A835YR19_9STRA	1.290e-6	35.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..25
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 48..367
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 26..47
None	No IPR available	TMHMM	TMhelix		coord: 25..47

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig982	contig	L-elsbetiae_contig982:18813..21069 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig982.18769.1	mRNA_L-elsbetiae_contig982.18769.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig982 18813..21069 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig982.18769.1 ID=prot_L-elsbetiae_contig982.18769.1|Name=mRNA_L-elsbetiae_contig982.18769.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=368bp
APSHPSPRSEGLLAALSTMVNDNLGVFRATTATMVVGSALTVCFLVYRRG
LHGFDSAAQVPASYFERRKRVRVRIAKVAEAAVVLSNPNGAPKGDHGRYS
TTTPSLMTSATVPLSVLLHAEHITLPRRLLRLPPRSLLPSAGGIDAATFT
LRLCGVSVAEEGVMLARKELVKPLVGRYCDAELLYRERRPRGSRSLPPPF
GRQASLLIAVCHIHRRRGVLWRDIFQPRLDPTAGFGEHLLSEGLAILREE
VWWAPGYNTPSLGSADATTEASAQARSTGRDARVIRDGDSSEQPFPALKR
LLEDREKFVTAEKSAELARRGVWGSPRHEDADRDKVGDRDGLSSTGLKER
SAAVVRAFVAFFGRGQK*