mRNA_L-elsbetiae_contig982.18769.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig982.18769.1
Unique NamemRNA_L-elsbetiae_contig982.18769.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig982.18769.1 vs. uniprot
Match: A0A6H5KRH1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRH1_9PHAE)

HSP 1 Score: 367 bits (942), Expect = 4.650e-122
Identity = 217/387 (56.07%), Postives = 253/387 (65.37%), Query Frame = 1 
Query:    1 APSHPSPRSEGLLAALSTMVNDNLGVFRATTATMVVGSALTVCFLVYRRGLHGFDSAAQVPASYFERRKRVRVRIAKVAEAAVVLSNPNGAPKGDHGRYSTTTPSLMTSATVPLSVLLHAEHITLPRRLLRLPPRSLLPSAGGIDAATFTLRLCGVSVAEEGVMLARKELVKPLVGRYCDAELLYRERRPRGSRSLPPPFG------RQASLLIAVCHIHRRRGVLWRDIFQPRLDPTAGFGEHLLSEGLAILREEVWWAPGYN---TPS----LGSADATTEASAQ-------ARSTGRDARVIRDGDSSEQPFPALKRLLEDREKFVTAEKSAELARRGVWGSPRHEDADRDKVGDRDGLSSTGLK---ERSAAVVRAFVAFFGR 1092
            AP+ P   +E +LA +S  +NDNL +FRA TATM+VGSAL + FLVYRRG+HGF SAAQVPASYFERRKR+RVRIAK++EA       +G PK   GR+ T   ++ T+      VLLHAEHITLPRRLLRLPPRSLLPSAGG DAATFTLRLCGVS   EGV+LAR ELVKPLVG YCDAELL+RE+R   S S     G       Q S  +AVCHIHRRRGVLWRD+ Q R+DP AGFGE+L+S+GLA LREE WWA       TP+      +A  T+  SAQ       A STG        GD SEQPFPALKRLLEDRE  V AE  A+ A RG+W  P+       + G RD  ++   K   E  A + R     FGR
Sbjct:   31 APAQPPRITERVLATISIKINDNLRLFRAGTATMMVGSALAISFLVYRRGVHGFRSAAQVPASYFERRKRLRVRIAKISEAPAAPPTFDGPPKDGRGRFDTAGVAIPTTRPKGSDVLLHAEHITLPRRLLRLPPRSLLPSAGGSDAATFTLRLCGVSAESEGVLLARNELVKPLVGFYCDAELLFREQRSAASPSATAGVGFGVGATEQVSGPVAVCHIHRRRGVLWRDMLQSRIDPKAGFGEYLISQGLARLREEQWWAAADRNGLTPAPAVVTAAARPTSAVSAQTHRHRTGAASTGEG------GDDSEQPFPALKRLLEDREILVAAEGDAKRASRGLWDLPQRGG----EGGGRDSAAAGRAKSLIEGVAGIARVLTGLFGR 407
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BLAST of mRNA_L-elsbetiae_contig982.18769.1 vs. uniprot
Match: A0A835YR19_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR19_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.290e-6
Identity = 42/120 (35.00%), Postives = 56/120 (46.67%), Query Frame = 1 
Query:   43 ALSTMVNDNLGVFRATTATMVVGSALTVCFLVYRRGLHGFDSAAQVPASYFERRKRVRVRIAKVAEAAVVLSNPNGAPKGDHGRYSTTTPSLMTSATVPLSVLLHAEHITLPRRLLRLPP 402
            A+S  VN +L  +R T AT+++G A  V F+V+RRG+ GF S   +P  YF  R+R+ VR+  VA         +G                         V L  EH T  RRLLRL P
Sbjct:   28 AVSESVNAHLRAYRMTMATLIIGGAAGVAFVVHRRGVRGFRSPLDLPEGYFVNRRRIGVRV--VAAEGHATDRKDGLQM----------------------VTLRLEHFTPARRLLRLLP 123
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig982.18769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KRH1_9PHAE4.650e-12256.07Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YR19_9STRA1.290e-635.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig982contigL-elsbetiae_contig982:18813..21069 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_005150.1
Exons5
Model size1104
Cds size1104
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig982.18769.1prot_L-elsbetiae_contig982.18769.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig982 18813..21069 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817043.1787555-CDS-L-elsbetiae_contig982:18812..193411622817043.1787555-CDS-L-elsbetiae_contig982:18812..19341Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig982 18813..19341 -
1691684004.320031-CDS-L-elsbetiae_contig982:18812..193411691684004.320031-CDS-L-elsbetiae_contig982:18812..19341Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig982 18813..19341 -
1622817043.1889653-CDS-L-elsbetiae_contig982:19918..201921622817043.1889653-CDS-L-elsbetiae_contig982:19918..20192Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig982 19919..20192 -
1691684004.3310623-CDS-L-elsbetiae_contig982:19918..201921691684004.3310623-CDS-L-elsbetiae_contig982:19918..20192Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig982 19919..20192 -
1622817043.1990306-CDS-L-elsbetiae_contig982:20404..205491622817043.1990306-CDS-L-elsbetiae_contig982:20404..20549Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig982 20405..20549 -
1691684004.3462439-CDS-L-elsbetiae_contig982:20404..205491691684004.3462439-CDS-L-elsbetiae_contig982:20404..20549Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig982 20405..20549 -
1622817043.210061-CDS-L-elsbetiae_contig982:20748..208211622817043.210061-CDS-L-elsbetiae_contig982:20748..20821Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig982 20749..20821 -
1691684004.3574817-CDS-L-elsbetiae_contig982:20748..208211691684004.3574817-CDS-L-elsbetiae_contig982:20748..20821Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig982 20749..20821 -
1622817043.223905-CDS-L-elsbetiae_contig982:20986..210691622817043.223905-CDS-L-elsbetiae_contig982:20986..21069Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig982 20987..21069 -
1691684004.3697095-CDS-L-elsbetiae_contig982:20986..210691691684004.3697095-CDS-L-elsbetiae_contig982:20986..21069Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig982 20987..21069 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig982.18769.1

>prot_L-elsbetiae_contig982.18769.1 ID=prot_L-elsbetiae_contig982.18769.1|Name=mRNA_L-elsbetiae_contig982.18769.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=368bp
APSHPSPRSEGLLAALSTMVNDNLGVFRATTATMVVGSALTVCFLVYRRG
LHGFDSAAQVPASYFERRKRVRVRIAKVAEAAVVLSNPNGAPKGDHGRYS
TTTPSLMTSATVPLSVLLHAEHITLPRRLLRLPPRSLLPSAGGIDAATFT
LRLCGVSVAEEGVMLARKELVKPLVGRYCDAELLYRERRPRGSRSLPPPF
GRQASLLIAVCHIHRRRGVLWRDIFQPRLDPTAGFGEHLLSEGLAILREE
VWWAPGYNTPSLGSADATTEASAQARSTGRDARVIRDGDSSEQPFPALKR
LLEDREKFVTAEKSAELARRGVWGSPRHEDADRDKVGDRDGLSSTGLKER
SAAVVRAFVAFFGRGQK*
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mRNA from alignment at L-elsbetiae_contig982:18813..21069-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig982.18769.1 ID=mRNA_L-elsbetiae_contig982.18769.1|Name=mRNA_L-elsbetiae_contig982.18769.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2257bp|location=Sequence derived from alignment at L-elsbetiae_contig982:18813..21069- (Laminarionema elsbetiae ELsaHSoW15)
GCGCCTTCGCACCCGTCCCCTCGAAGCGAAGGATTGCTTGCTGCATTGTC
CACTATGGTCAACGACAACCTCGGCGTATTCCGGTGAGAGCGGAGCAACT
CACCGAACGTTCTTACTTATTTGTAATAAAAAATGTTGGACACTGGTGTC
AAATATTCGAAAGTCGTGAAATCTCATTTTTGGCCCTGCCTTCCACCCTT
GGCATTGCCCGTCGTTGTTTGCTTTGTTTTCTGCGACGATGTATGTAGGG
CCACAACGGCGACGATGGTGGTGGGGTCGGCGCTGACGGTTTGCTTTCTC
GTCTACCGTCGGGGTTTGCACGTGAGAGGCTTTGAGACGGCTCTAGGGTA
GGTAGAGTGTCTCAAGTTGGTTCTGGTTTGTTATGGTTCACAAAATTGGA
GATACAGATACTCTGACATCTGAGTTAGCACCTCGTTGATAGAACGTGTG
AAGGCGAAACCCCTTGCCCAATTTAATCAATTAGATACACCTTGCTCGCT
CAACACAACCCCACTTTCAGGGGTTCGATTCTGCCGCTCAGGTCCCTGCA
TCGTATTTCGAACGGCGGAAGAGGGTGAGGGTCCGAATCGCAAAGGTTGC
GGAGGCGGCGGTAGTGCTTTCAAACCCCAACGGTGCACCCAAGGGCGACC
ATGGCCGATACAGCAGTGTCAATGAAGAAGAGTCTCCTATGACCTCGCTC
CAGGACGGCGCGCTCGGTAGTTCAGACGGTGGGTGGGATATCCTCAGCCT
TGGCTTGATGTGTCTGGCCGTTGCTTGTATGCAGTGCACGCACAATACAT
GCTCACGAACTGATTGTCATACGAGTTTTATGTACGCTTTCGTGCCCCAG
GCTCGGTGCCATTCTCGTCTACTGAAGCAACCACTCCGTCTCTCATGACT
TCTGCCACTGTGCCCCTCTCAGTACTGCTCCACGCCGAGCACATCACTCT
CCCCCGGCGGCTCCTTCGTCTGCCGCCGAGGTCCCTCCTCCCGAGTGCCG
GCGGTATCGATGCCGCCACCTTCACGCTGAGGCTCTGCGGAGTTTCCGTT
GCAGAGGAGGGCGTCATGCTTGCGCGGAAGGAGCTGGTGAAGCCCTTGGT
CGGACGGTACTGCGATGCCGAGCTGCTGTACCGGGAGCGAAGACCCAGGG
GGTCCCCAAACTCGGGGGGACAGGTGATTGCAAGCGGCAGTTGTATGGAG
TATAAACACGCACCATCATCCGCTGCGCTTAAGGCCAGCTCTGGCGCTGT
GTTCGTGCCACTGCCACTAGTCTTGAGTTAGCTTCAAGATGTGTAAGGTG
GACGTGGTGTTGACCATGTGGATCCGAGGTATAGCTGTTGTGAAGATATC
GCCCGCAATGCACGTCACTTATTTTTTCGGTCGCGCGCTTCTCCGGAGGC
GTGTTTCTCTCCGGGCATGTGCTTGTGAATGTCGTACCTACTACAGGAAT
CGAGTACGCTGTCGCCTGTGTACTCGAGTGGAAGACGGTTACTTCATTTG
TTCAAAGGCCACCACCCGGGCTTGTCTTGTGGCAATCGGTGTTTTTTCCT
TGCGCTTGTGCTTCCGGAAACCCTTCTGTCACAGCGGTCGCTTTTTGGTC
GGGAACTGAAAACAAAACGTCAAGACCTCGACTCGATCTGCGGCCCTTCG
AGGCCTCAGAATCCTCAGGCGTCACATCTTTTCAATGCCTGGCTCTCCAT
GCCTCTGCATCCTGTACACTCAACGTAGCTCTCGGTCCCTTCCGCCGCCG
TTTGGTCGGCAGGCTTCCTTGCTGATCGCTGTCTGCCACATCCACCGTCG
CAGGGGAGTGCTCTGGCGGGACATCTTTCAGCCTCGACTCGACCCCACGG
CAGGGTTCGGCGAGCACCTGCTCTCGGAAGGCCTCGCGATACTACGCGAA
GAAGTGTGGTGGGCCCCAGGCTACAATACCCCCAGCCTGGGTTCCGCCGA
CGCGACAACAGAGGCGAGCGCCCAGGCGAGGTCGACTGGCAGGGACGCTC
GCGTGATCAGGGACGGGGACAGCTCGGAGCAGCCCTTCCCCGCGCTCAAA
CGCCTTCTTGAGGACCGTGAGAAGTTTGTTACCGCCGAGAAAAGCGCGGA
GCTGGCGAGGAGGGGCGTTTGGGGGTCGCCGCGGCACGAAGATGCTGACC
GAGATAAAGTGGGTGATAGGGACGGTTTGTCGTCAACGGGTCTGAAGGAA
CGATCGGCAGCGGTTGTGCGAGCTTTCGTGGCTTTTTTTGGCAGAGGGCA
AAAGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig982:18813..21069-

>mRNA_L-elsbetiae_contig982.18769.1 ID=mRNA_L-elsbetiae_contig982.18769.1|Name=mRNA_L-elsbetiae_contig982.18769.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2208bp|location=Sequence derived from alignment at L-elsbetiae_contig982:18813..21069- (Laminarionema elsbetiae ELsaHSoW15)
GCGCCTTCGCACCCGTCCCCTCGAAGCGAAGGATTGCTTGCTGCATTGTC
CACTATGGTCAACGACAACCTCGGCGTATTCCGGCGCCTTCGCACCCGTC
CCCTCGAAGCGAAGGATTGCTTGCTGCATTGTCCACTATGGTCAACGACA
ACCTCGGCGTATTCCGGGCCACAACGGCGACGATGGTGGTGGGGTCGGCG
CTGACGGTTTGCTTTCTCGTCTACCGTCGGGGTTTGCACGGCCACAACGG
CGACGATGGTGGTGGGGTCGGCGCTGACGGTTTGCTTTCTCGTCTACCGT
CGGGGTTTGCACGGGTTCGATTCTGCCGCTCAGGTCCCTGCATCGTATTT
CGAACGGCGGAAGAGGGTGAGGGTCCGAATCGCAAAGGTTGCGGAGGCGG
CGGTAGTGCTTTCAAACCCCAACGGTGCACCCAAGGGCGACCATGGCCGA
TACAGCAGGGTTCGATTCTGCCGCTCAGGTCCCTGCATCGTATTTCGAAC
GGCGGAAGAGGGTGAGGGTCCGAATCGCAAAGGTTGCGGAGGCGGCGGTA
GTGCTTTCAAACCCCAACGGTGCACCCAAGGGCGACCATGGCCGATACAG
CACAACCACTCCGTCTCTCATGACTTCTGCCACTGTGCCCCTCTCAGTAC
TGCTCCACGCCGAGCACATCACTCTCCCCCGGCGGCTCCTTCGTCTGCCG
CCGAGGTCCCTCCTCCCGAGTGCCGGCGGTATCGATGCCGCCACCTTCAC
GCTGAGGCTCTGCGGAGTTTCCGTTGCAGAGGAGGGCGTCATGCTTGCGC
GGAAGGAGCTGGTGAAGCCCTTGGTCGGACGGTACTGCGATGCCGAGCTG
CTGTACCGGGAGCGAAGACCCAGGGGCAACCACTCCGTCTCTCATGACTT
CTGCCACTGTGCCCCTCTCAGTACTGCTCCACGCCGAGCACATCACTCTC
CCCCGGCGGCTCCTTCGTCTGCCGCCGAGGTCCCTCCTCCCGAGTGCCGG
CGGTATCGATGCCGCCACCTTCACGCTGAGGCTCTGCGGAGTTTCCGTTG
CAGAGGAGGGCGTCATGCTTGCGCGGAAGGAGCTGGTGAAGCCCTTGGTC
GGACGGTACTGCGATGCCGAGCTGCTGTACCGGGAGCGAAGACCCAGGGG
CTCTCGGTCCCTTCCGCCGCCGTTTGGTCGGCAGGCTTCCTTGCTGATCG
CTGTCTGCCACATCCACCGTCGCAGGGGAGTGCTCTGGCGGGACATCTTT
CAGCCTCGACTCGACCCCACGGCAGGGTTCGGCGAGCACCTGCTCTCGGA
AGGCCTCGCGATACTACGCGAAGAAGTGTGGTGGGCCCCAGGCTACAATA
CCCCCAGCCTGGGTTCCGCCGACGCGACAACAGAGGCGAGCGCCCAGGCG
AGGTCGACTGGCAGGGACGCTCGCGTGATCAGGGACGGGGACAGCTCGGA
GCAGCCCTTCCCCGCGCTCAAACGCCTTCTTGAGGACCGTGAGAAGTTTG
TTACCGCCGAGAAAAGCGCGGAGCTGGCGAGGAGGGGCGTTTGGGGGTCG
CCGCGGCACGAAGATGCTGACCGAGATAAAGTGGGTGATAGGGACGGTTT
GTCGTCAACGGGTCTGAAGGAACGATCGGCAGCGGTTGTGCGAGCTTTCG
TGGCTTTTTTTGGCAGAGGGCAAAAGTGACTCTCGGTCCCTTCCGCCGCC
GTTTGGTCGGCAGGCTTCCTTGCTGATCGCTGTCTGCCACATCCACCGTC
GCAGGGGAGTGCTCTGGCGGGACATCTTTCAGCCTCGACTCGACCCCACG
GCAGGGTTCGGCGAGCACCTGCTCTCGGAAGGCCTCGCGATACTACGCGA
AGAAGTGTGGTGGGCCCCAGGCTACAATACCCCCAGCCTGGGTTCCGCCG
ACGCGACAACAGAGGCGAGCGCCCAGGCGAGGTCGACTGGCAGGGACGCT
CGCGTGATCAGGGACGGGGACAGCTCGGAGCAGCCCTTCCCCGCGCTCAA
ACGCCTTCTTGAGGACCGTGAGAAGTTTGTTACCGCCGAGAAAAGCGCGG
AGCTGGCGAGGAGGGGCGTTTGGGGGTCGCCGCGGCACGAAGATGCTGAC
CGAGATAAAGTGGGTGATAGGGACGGTTTGTCGTCAACGGGTCTGAAGGA
ACGATCGGCAGCGGTTGTGCGAGCTTTCGTGGCTTTTTTTGGCAGAGGGC
AAAAGTGA
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