mRNA_L-elsbetiae_contig981.18767.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig981.18767.1 vs. uniprot
Match: D8LJY0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJY0_ECTSI) HSP 1 Score: 546 bits (1406), Expect = 2.560e-163 Identity = 735/1660 (44.28%), Postives = 817/1660 (49.22%), Query Frame = 1
Query: 1 STDANVRVWDLSNDDEKQRQTKPAFRDISNSKDTRIVFGDFAYGGATVLSLVKLDAPPVANRMEIALPEAGVASPLXXXXXXXXXRGKRHCRMLKDLAGTQDGRHVVLVCSDGMLLYHRHTQAVNTMRLQPLEGIGMEEEDAKPTVALSLAGTSGLPVLIIAGEK----KGXXXXEETEKELELMALPRSDEQKSEDAQVKRTDSLGRTMPPWPEGRRLTPEDNETDGEESAXXXXXXXXXXXXXDTEHPPAGNGDXXEREQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAAPVTPSTPXXXXXPQGPSWHGGG---TLGWKE----------GTPQPGTPMSVTPPPLGAGVQQHLFASPGAPTPGSGXXXXXXXXXXXXXXXXXDKPGNSGG--DQAVRASPXXXXXXXXXSRGGRKKRAVGAGXXXXXXXXXXXXXXXGSPATEQGTAAAAPWG---------------GGAMDGVVEKKR-SAVAGLAELGFAVGVVTGGGLPGSGSKQLRKEPVAGAAVXXXXXXXXXXXXXXXVVTVSKGRTRETSVDRDQFGRTAGGRGVAGGDETGNAGEISGPVAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREQLLLRDRRSRIAARALRSSGSVFDMGSIVKGMGSSSWLSGG-EQLEQLRVVRVEERDVAVDPPPMPPGLVSFLGQRKTRRDRETTPITLEQARARYRAGLKLLPHTLSAASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATHPVKEASEA-ARSGGASALSESSAGGTPVALAGDGAVGAERVGGAGEKTTGVWGKSAAAESGGRGETLPSPAVNSSSTRVVAAVDGATAPEKDAEKLAGSIGGGADDGSGGKXSGLATAPAATATSQPAGASGTVGAPPTPIAGGTGAGGHAGVPMFETAATTASAATPVSREEAAA--------------------------------------------------PTEPTAEAAADDATTRLPGRQVGAEGLGVPGAEGGPETAALTSATETNLPAGLTRQSSGTAPAADGAXXXXXXXVQPAGAARPEAASAXXXXXASTESTTGGAAVGAMRTVDPMDVEVDG----------------DAPQTGGGDAACSGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATDRAPXXXXXXXXXXXXTKQALRTGNGRAAGNEAK-RPPSGPDVFPPALECVIDMERQESGRPAAEGGEQLDELKQQLNREQQPDSLGGGDXXXXXXXXXXXXXXXXSAIDRLYGDHCLEREAVARSFFDEHDTLRRRFQAAVDLVELDKAVESEGLELRNGCRTVQTLKMRLKSRWREGTVLGSILGDSCSGSAAVGGDGGGVRGGGG---LSRCSSKEVQQATLRWQEQVRAVIRGYEELVAEVLGRQRLEAGALQMAQEMEVPKGKAPALSVRFAFPRMFEEVAQRHKIKL 4659
STDANVRVWDLS++ ++QTKP+FRDISNSKDTR+VFGDFAYGGATVLSLVKLDAPPVANRMEI RH + D T D R + ++ + + + AVNTMRLQPLEGIGMEEEDAKPTVALSLAG SGLPVLIIAG K EE +KELELMALPR+++Q+ ED VKRTD+LGR M PWPEGRRLTPEDNETDGE+SA + G + E XX + PSTP PQGP+W G G LGW+ G P P T MSV+P P+GAGVQQHLF+SP TPGSG G Q P SRGGR+KR GA XXXXXXXXXXXXXXX GT+A GGA + + E++R SAVAGLAELGF DQ + A DE G E + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LLLRDRRSRIAAR LRSSGS+FDMGSIVKG+GSS WLSGG EQ E+LRVVRVEE+D V+PP +PPGLV+FL R+TRRDRETTPITLEQARARYRAGL+LLPHTLSAA+ XXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXX XX + P EAS A A G SA++ S G P +AG SP + AAV +P+++A + +PM P E AA + G Q G A+ GPET SA ET+ P +S APAAD A P A P A S ST G A GA DPMDVE++ + G GD E XXXXXXXXXXXXXXX XXXXXXXXXXXX R G +A EA+ PP G DVFPP LECVIDM RQE+ R EG L ++ +QP GG SAIDRLYGD CLEREA ARSFF EHD LRR+F AAVDLVELDKAVESEGLELR+GCRTVQTLKMRLK+RWREGTVLG+ILGDSC LSRC+SKEVQQATLRWQEQ+RAVI ++EL+ EVLGRQRLEAGALQMAQ+MEVPKGKAP LSVRFAFP MF+EVAQRHKIK+
Sbjct: 258 STDANVRVWDLSSE---EKQTKPSFRDISNSKDTRVVFGDFAYGGATVLSLVKLDAPPVANRMEIG----------------------RHRPVASDTLST-DERIMHVLAPFSAIAFCLWSPAVNTMRLQPLEGIGMEEEDAKPTVALSLAGASGLPVLIIAGGKGSGGDAAVSGEERDKELELMALPRTEKQQREDLHVKRTDTLGRPMLPWPEGRRLTPEDNETDGEDSAAADSDNESGNGNPEV----GGXSSKQQGEGGGVSVGEEAGGTGVVPASPMNQQRQPAATSAAXXXXTILPPSTPVPPVTPQGPTWQGAGGDNALGWRRTGDSADAQQAGRPTPQTSMSVSPSPIGAGVQQHLFSSPAGSTPGSGGGRKRTRVDGGVDGKTGAADGXXXXXXQQGAPMIPGGPSPGSAGSRGGRRKR--GAXXXXXXXXXXXXXXXXXXXTAAGGTSAXXXXXXXXXXXXXXXXXXXXGGAKEDLGERRRGSAVAGLAELGF----------------------------------------------------------EDQRDKAA--------DEEGEQDEREAQNSTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------------------------------------------------------------------------------------------LLLRDRRSRIAARTLRSSGSIFDMGSIVKGIGSS-WLSGGGEQAEELRVVRVEEKDELVEPPVVPPGLVAFLETRRTRRDRETTPITLEQARARYRAGLRLLPHTLSAAAAXXXXXXARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPXXXXXXXXLVPASSXXRP----------SPPATEASAAVAARGSTSAVTPSLPG--PAVVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPPLAG------AAVGAVPSPQENAAQ------------------------------------------------------QGVLPMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAERVXXAAEASSAAGSLGAQAGTSARATAAADSGPETTNRPSAMETSPPG----TASNFAPAADDAL--------PTAGAPPPAV-----VGGSARSTVVGVAGGA----DPMDVEIENRTIAAAAATVQPVAEKNRAAPGSGDVVAKAEALEERKEQATTRPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPKKRAG--KAGTKEARPSPPKGHDVFPPPLECVIDMGRQETRRATTEGERPLGRQQRGYVPAEQPHDGGG------------------SAIDRLYGDQCLEREAAARSFFAEHDNLRRQFLAAVDLVELDKAVESEGLELRSGCRTVQTLKMRLKTRWREGTVLGTILGDSCGSGXXXXXXXXXXXXXXXXXXLSRCTSKEVQQATLRWQEQIRAVITDHKELLREVLGRQRLEAGALQMAQQMEVPKGKAPPLSVRFAFPNMFDEVAQRHKIKM 1606
BLAST of mRNA_L-elsbetiae_contig981.18767.1 vs. uniprot
Match: A0A6H5LF69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LF69_9PHAE) HSP 1 Score: 538 bits (1385), Expect = 6.750e-158 Identity = 814/1768 (46.04%), Postives = 893/1768 (50.51%), Query Frame = 1
Query: 1 STDANVRVWDLSNDDEKQRQTKPAFRDISNSKDTRIVFGDFAYGGATVLSLVKLDAPPVANRMEIA-LPEAGVASPLXXXXXXXXXRGKRHCRMLKDLAGTQDGRHVVLVCSDGMLLYHRHTQ-----------------------------------------------------------AVNTMRLQPLEGIGMEEEDAKPTVALSLAGTSGLPVLIIAGEK----KGXXXXEETEKELELMALPRSDEQKSEDAQVKRTDSLGRTMPPWPEGRRLTPEDNETDGEESAXXXXXXXXXXXXXDTEHPPAGNGDXXERE------QXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAAPVTPSTPXXXXXPQGPSWHGGG---TLGWKE----------GTPQPGTPMSVTPPPLGAGVQQHLFASPGAPTPGSGXXXXXXXXXXXXXXXXXDKPGNSGGDQAVRASPXXXXXXXXXS---RGGRKKRAVGAGXXXXXXXXXXXXXXXGSPATEQGTAAAAPWGGG-------------AMDGVVEKKR-SAVAGLAELGFAVGVVTGGGLPGSGSKQLRKEPVAGAAVXXXXXXXXXXXXXXXVVTVSKGRTRETSVDRDQFGRTAGGRGVAGGDETGNAGEISGPVAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREQ-------------------------------------------------------------------------LLLRDRRSRIAARALRSSGSVFDMGSIVKGMGSSSWLSGG-EQLEQLRVVRVEERDVAVDPPPMPPGLVSFLGQRKTRRDRETTPITLEQARARYRAGLKLLPHTLSAASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATHPVKEASEAARSGGASALSESSAGGTPVALAGDGAVGAERVGGAGEKTTGVWGKSAAAESGGRGETLPSPAVNSSSTRVVAAVDGAT-APEKDAEK-----LAGSIGGGADDGSGGKXSGLATAPAAT-ATSQPAGASGTVGAPPTPIAGGTGAGGHAGVPMFETAATTASAATPVSREEAAAPTEPTAEAAADDATTRLPGRQVGAEGLGVPGAEGGP----------------------ETAALTSATETNLPAGLTRQSSGTAPAADGAXXXXXXXVQPAGAARPEAASAXXXXXASTESTTGGAAVGAMRTVDPMDVEVDGDAPQTGGGDA-----------ACSGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATDRAPXXXXXXXXXXXXTKQALRTGNGRAAGNEAK-RPPSGPDVFPPALECVIDMERQESGRPAAEGGEQLDELKQQLNREQQPDSLGGGDXXXXXXXXXXXXXXXXSAIDRLYGDHCLEREAVARSFFDEHDTLRRRFQAAVDLVELDKAVESEGLELRNGCRTVQTLKMRLKSRWREGTVLGSILGDSCSGSAAVGGDGGGVRGGGGLSRCSSKEVQQATLRWQEQVRAVIRGYEELVAEVLGRQRLEAGALQMAQEMEVPKGKAPALSVRFAFPRMFEEVAQRHKIKL 4659
STDANVRVWDLS++ +RQTKP FRDISNSKD R VFGDFAYGGATVLSLVKLDAPPVANRMEI P G+ DGRHVVLVCSDGMLLYHRHTQ AVNTMRLQPLEGIG EEDAKPTVALSLAG SGLPVLIIAG K EE +KELELMALPR+ EQ+ ED+QVKRTD+ GR M PWPEGRRLTPEDNETDGE+SA P GD ++ XXXXXXXXXXXXXXXX STP P GP+W G G LGW+ G P T MS++P P+GAGVQQHLF+SP TPGSG Q + +P S RGGR+KR XXXXXXXX XXX + A +G+ E+KR SAVAGLAELGF VG+V G+ GSGSK+ RK +A V XXXXXXXXXXX GR A GR D T GEISGPVAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX E+ LLRDRRSRI AR LRSSGS+FDMGSIVKG+GSS WLSGG EQ E+LRVV VEERD V+PP +PPGLV+FL R+TRRDRETTPITLEQARARYR GL+LLPH LSAA+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXX A G SA++ S G +AGD A E GG + A+ SGG SSS + A GA +P+++A + + GS+ GG D APA + ATS+ A T + G ETA L SA ET+ PA T APAAD A + AGA P + ST ST G A GA DPMDVE++ T XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXX A + +A EA+ PP GPDV PP LECVIDM RQE+ R E L +++ +QP GG SAIDRLYGD CLEREA ARSFF EHD LRR+F AAVDLVELDKAVESEGLELRNGCRTVQTLKMRLK+RWREGTVLG+IL DS SG LSRC+SKEVQQATLRWQEQ+RAVI ++EL+ EVLGRQRLEAGALQMAQ+MEVPKGKAP LSVRFAFP MF+EVAQRHKI +
Sbjct: 383 STDANVRVWDLSSE---ERQTKPPFRDISNSKDIRAVFGDFAYGGATVLSLVKLDAPPVANRMEIGEKPREGLGG---------------------------DGRHVVLVCSDGMLLYHRHTQPPTPSQATSAPCTFLLLSEPPLFVLVSSERDPNGLLFLLNVGGTLVCVWHSPPNDTPQQAVNTMRLQPLEGIGTREEDAKPTVALSLAGASGLPVLIIAGGKGSGGDAAVSGEERDKELELMALPRTKEQQREDSQVKRTDTFGRCMLPWPEGRRLTPEDNETDGEDSAAADSGNESGNGN------PEVGGDSSRQQGEGGCVSVGEEVGGTEVVPASPMNQXXXXXXXXXXXXXXXXXXXXXXXSTPAPPVTPPGPTWQGAGEDNALGWRRTGDSANAQQVGRPTSQTSMSLSPSPIGAGVQQHLFSSPAGSTPGSGGGRKRTRVDGGSDGKTGAAXXXXXXXQ--QDAPTIHGVPTPGSAGLRGGRRKRGAXXXXXXXXXXXAGTGXXXXTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXGKEGLSERKRGSAVAGLAELGFEVGIV---GVLGSGSKESRKGSMAATTVVSTGXXXXXXXXXXXXXXXXX------------LGRAASGRS----DVTAGGGEISGPVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVREHAQAAKQDKPRENRGEKSPSVGGGDSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVDTSTVPAKRPGKKRAREDQRDKPGGEEGEQDEREAQNPTPTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGGDQLLRDRRSRITARTLRSSGSIFDMGSIVKGIGSS-WLSGGGEQAEELRVVCVEERDALVEPPVVPPGLVAFLETRRTRRDRETTPITLEQARARYRTGLRLLPHMLSAAAASADADGARSNDSGSDSSDGANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVVPTPTSLQPELVPASSSXXXXXXXXXXXXXXXXXXXAR-----GSTSAVTPSLPG--LAVVAGDVAEETESAGGPRKDEP-------ASVSGGVSAGXXXXXXPSSSPPLAGAAVGAVPSPQENAAQQGVFPMGGSVDGGCAD----------RAPAESLATSE--------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATTIKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETATLPSAMETSPPAAATNL----APAADDA-------LTSAGAPPPAVVAG------STRSTVVGVAGGA----DPMDVEIESRTITTAAATMQPVANKNRKAPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARKKSTRKARTKEARPSPPKGPDVLPPPLECVIDMGRQETRRATTEDERPLGRQQRREIPCEQPRDGGG------------------SAIDRLYGDQCLEREAAARSFFAEHDKLRRQFLAAVDLVELDKAVESEGLELRNGCRTVQTLKMRLKTRWREGTVLGTILSDS-SGXXXXXXXXXXXXXXXXLSRCTSKEVQQATLRWQEQIRAVITDHKELLREVLGRQRLEAGALQMAQQMEVPKGKAPPLSVRFAFPNMFDEVAQRHKINM 2002
BLAST of mRNA_L-elsbetiae_contig981.18767.1 vs. uniprot
Match: A0A835YLG3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLG3_9STRA) HSP 1 Score: 122 bits (306), Expect = 3.040e-24 Identity = 88/193 (45.60%), Postives = 112/193 (58.03%), Query Frame = 1
Query: 16 VRVWDLSNDDEKQRQTKPAFRDISNSKDTRI-----------------------VFGDFAYGGATVLSLVKLDAPPVANRMEIALPEAGVASPLXXXXXXXXXRGKRHCRMLKDLAGTQDGRHVVLVCSDGMLLYHRHTQAVNTM---------RLQPLEGIGMEE--EDAKPTVALSL--AGTSGLPVLIIA 486
+R+WDLS+D +R P + D+ N++D + VFGDFAYGG LSLV+LDA ANR E+ALP G A XXXXXXXXX +RHCR++K LAGTQDGRHV+++CSDG +LYHRH RLQPL + ++ ED TVALSL AG +P+L+IA
Sbjct: 181 IRLWDLSDDGGARR---PGYTDVPNTQDAKDAKRRXXXXXXXXXXXXXXXXXXGVFGDFAYGGTYSLSLVRLDAAAWANRAELALPPQGSAXXXXXXXXXXXXXARRHCRVIKRLAGTQDGRHVLVLCSDGQVLYHRHAANXXXXXXXXXDAHSRLQPLGALLVDGRGEDVPCTVALSLVDAGAGAVPMLMIA 370 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig981.18767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig981.18767.1 >prot_L-elsbetiae_contig981.18767.1 ID=prot_L-elsbetiae_contig981.18767.1|Name=mRNA_L-elsbetiae_contig981.18767.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1554bp STDANVRVWDLSNDDEKQRQTKPAFRDISNSKDTRIVFGDFAYGGATVLSback to top mRNA from alignment at L-elsbetiae_contig981:21597..30393- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig981.18767.1 ID=mRNA_L-elsbetiae_contig981.18767.1|Name=mRNA_L-elsbetiae_contig981.18767.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8797bp|location=Sequence derived from alignment at L-elsbetiae_contig981:21597..30393- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig981:21597..30393- >mRNA_L-elsbetiae_contig981.18767.1 ID=mRNA_L-elsbetiae_contig981.18767.1|Name=mRNA_L-elsbetiae_contig981.18767.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=9324bp|location=Sequence derived from alignment at L-elsbetiae_contig981:21597..30393- (Laminarionema elsbetiae ELsaHSoW15)back to top |