mRNA_L-elsbetiae_contig9809.18763.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9809.18763.1
Unique NamemRNA_L-elsbetiae_contig9809.18763.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9809.18763.1 vs. uniprot
Match: A0A6H5JMU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMU7_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 1.660e-57
Identity = 96/128 (75.00%), Postives = 110/128 (85.94%), Query Frame = 2 
Query:    5 YTAFTLAFVVYECTISGSLVHARPPAELFKIVAYSMSCLLVYRSVPMYLRLMLIWTITTAFSGVFQPLLWLDNASDSVTEQWLVWTLLALSIAGMAGNILGALTVFPSAGASSGKARRRRYKTPVKES 388
            Y AFTL F +YE +  GSLVH RPPAELFK+VAYS+SCLLVYRSV +YLRLMLIWTITTAFSGVFQ LLWL+N+  S  E+ LVWT+L LSIAGMAGNI+GA+TVFPS G SSGKARRRRYK+ +KE+
Sbjct:   45 YAAFTLGFALYEISTGGSLVHMRPPAELFKVVAYSVSCLLVYRSVSLYLRLMLIWTITTAFSGVFQSLLWLENSGGSAIERGLVWTMLVLSIAGMAGNIIGAVTVFPSVGGSSGKARRRRYKSSLKET 172
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BLAST of mRNA_L-elsbetiae_contig9809.18763.1 vs. uniprot
Match: D8LH51_ECTSI (Dynein light chain Tctex1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH51_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 2.230e-17
Identity = 40/52 (76.92%), Postives = 44/52 (84.62%), Query Frame = -3 
Query:  623 VSCLIVERPELRPSGQVHSTTAAFWDTRADGASTVRWENETMACVILLFGVG 778
            VSCL+VER + R S QV STTAAFWD RADGASTVRWENETMACVI +FG+ 
Sbjct:   66 VSCLLVERMQQRTSAQVDSTTAAFWDPRADGASTVRWENETMACVITIFGIA 117
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BLAST of mRNA_L-elsbetiae_contig9809.18763.1 vs. uniprot
Match: A0A7S2UUF8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUF8_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.380e-5
Identity = 22/50 (44.00%), Postives = 35/50 (70.00%), Query Frame = -3 
Query:  629 VSCLIVERPELRPSGQVHSTTAAFWDTRADGASTVRWENETMACVILLFG 778
            VSCL+ E+ +     Q+ S   A+WD R DG+ T+RWEN++M+CV+++ G
Sbjct:   70 VSCLLFEKEQ---GAQMTSAVTAYWDPRTDGSFTLRWENDSMSCVLVISG 116
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BLAST of mRNA_L-elsbetiae_contig9809.18763.1 vs. uniprot
Match: C1BWU7_ESOLU (Dynein light chain Tctex-type 1 n=1 Tax=Esox lucius TaxID=8010 RepID=C1BWU7_ESOLU)

HSP 1 Score: 53.1 bits (126), Expect = 2.980e-5
Identity = 24/70 (34.29%), Postives = 42/70 (60.00%), Query Frame = -3 
Query:  623 LHLCDTNLSKTIYPTRQ-VSCLIVERPELRPSGQVHSTTAAFWDTRADGASTVRWENETMACVILLFGVG 829
            + LC + LSK   P +  V+C+I++R        + + ++ FWD   DG+ T +WENE+M C++ +FG+ 
Sbjct:   46 VELCLSQLSKLGKPFKYIVTCIIMQRN----GAGLQTASSCFWDDTTDGSCTFKWENESMHCIVTVFGLA 111
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BLAST of mRNA_L-elsbetiae_contig9809.18763.1 vs. uniprot
Match: A0A6P7G356_DIAVI (dynein light chain Tctex-type-like n=1 Tax=Diabrotica virgifera virgifera TaxID=50390 RepID=A0A6P7G356_DIAVI)

HSP 1 Score: 52.8 bits (125), Expect = 3.800e-5
Identity = 25/67 (37.31%), Postives = 40/67 (59.70%), Query Frame = -3 
Query:  623 CDTNLSKTIYPTRQV-SCLIVERPELRPSGQVHSTTAAFWDTRADGASTVRWENETMACVILLFGVG 820
            C + LSKT    + V +C I+++        +H+ ++ +WD+  DG  TVRWEN TM CV+ +FG+ 
Sbjct:   46 CLSALSKTKKMFKYVITCSIMQKT----GAGLHTASSCYWDSATDGTCTVRWENNTMYCVVTVFGLA 108
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BLAST of mRNA_L-elsbetiae_contig9809.18763.1 vs. uniprot
Match: A0A1J4L1Z1_9EUKA (Dynein light chain Tctex-type 1 n=1 Tax=Tritrichomonas foetus TaxID=1144522 RepID=A0A1J4L1Z1_9EUKA)

HSP 1 Score: 52.4 bits (124), Expect = 5.070e-5
Identity = 19/50 (38.00%), Postives = 35/50 (70.00%), Query Frame = -3 
Query:  623 CLIVERPELRPSGQVHSTTAAFWDTRADGASTVRWENETMACVILLFGVG 772
            CLI+++      G +H +++ +WD+ +DG  TVRWENE+M C++ ++G+ 
Sbjct:   61 CLILQKA----GGGLHVSSSCYWDSNSDGMVTVRWENESMHCIVSIYGLA 106
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BLAST of mRNA_L-elsbetiae_contig9809.18763.1 vs. uniprot
Match: A2F6X9_TRIVA (Tctex-1 family protein n=1 Tax=Trichomonas vaginalis TaxID=5722 RepID=A2F6X9_TRIVA)

HSP 1 Score: 52.4 bits (124), Expect = 5.070e-5
Identity = 19/50 (38.00%), Postives = 35/50 (70.00%), Query Frame = -3 
Query:  623 CLIVERPELRPSGQVHSTTAAFWDTRADGASTVRWENETMACVILLFGVG 772
            CLI+++      G +H +++ +WD+ +DG  TVRWENE+M C++ ++G+ 
Sbjct:   61 CLILQKA----GGGLHVSSSCYWDSNSDGMVTVRWENESMHCIVSIYGLA 106
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BLAST of mRNA_L-elsbetiae_contig9809.18763.1 vs. uniprot
Match: A0A7N4UZL1_SARHA (Dynein light chain Tctex-type 3 n=8 Tax=Mammalia TaxID=40674 RepID=A0A7N4UZL1_SARHA)

HSP 1 Score: 52.4 bits (124), Expect = 6.080e-5
Identity = 20/53 (37.74%), Postives = 36/53 (67.92%), Query Frame = -3 
Query:  623 VSCLIVERPELRPSGQ-VHSTTAAFWDTRADGASTVRWENETMACVILLFGVG 778
            V+C ++++     SG  +H+ ++ FWDT +DG  T+RWEN+TM C++ +F + 
Sbjct:   66 VTCAVMQK-----SGSGLHTASSCFWDTTSDGTCTIRWENQTMNCIVNVFAIA 113
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BLAST of mRNA_L-elsbetiae_contig9809.18763.1 vs. uniprot
Match: A2G3N1_TRIVA (Uncharacterized protein n=1 Tax=Trichomonas vaginalis TaxID=5722 RepID=A2G3N1_TRIVA)

HSP 1 Score: 50.8 bits (120), Expect = 6.330e-5
Identity = 18/50 (36.00%), Postives = 35/50 (70.00%), Query Frame = -3 
Query:  623 CLIVERPELRPSGQVHSTTAAFWDTRADGASTVRWENETMACVILLFGVG 772
            CLI+++      G +H +++ +WD+ +DG  TVRW+NE+M C++ ++G+ 
Sbjct:   19 CLILQKA----GGGLHVSSSCYWDSNSDGMVTVRWKNESMHCIVSIYGLA 64
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9809.18763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JMU7_9PHAE1.660e-5775.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH51_ECTSI2.230e-1776.92Dynein light chain Tctex1 n=1 Tax=Ectocarpus silic... [more]
A0A7S2UUF8_9STRA1.380e-544.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
C1BWU7_ESOLU2.980e-534.29Dynein light chain Tctex-type 1 n=1 Tax=Esox luciu... [more]
A0A6P7G356_DIAVI3.800e-537.31dynein light chain Tctex-type-like n=1 Tax=Diabrot... [more]
A0A1J4L1Z1_9EUKA5.070e-538.00Dynein light chain Tctex-type 1 n=1 Tax=Tritrichom... [more]
A2F6X9_TRIVA5.070e-538.00Tctex-1 family protein n=1 Tax=Trichomonas vaginal... [more]
A0A7N4UZL1_SARHA6.080e-537.74Dynein light chain Tctex-type 3 n=8 Tax=Mammalia T... [more]
A2G3N1_TRIVA6.330e-536.00Uncharacterized protein n=1 Tax=Trichomonas vagina... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9809contigL-elsbetiae_contig9809:3854..6834 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-24_000560.1
Exons4
Model size1185
Cds size282
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9809.18763.1prot_L-elsbetiae_contig9809.18763.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9809 4648..5405 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817042.53026-UTR-L-elsbetiae_contig9809:3853..46471622817042.53026-UTR-L-elsbetiae_contig9809:3853..4647Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9809 3854..4647 -
1691684003.8407526-UTR-L-elsbetiae_contig9809:3853..46471691684003.8407526-UTR-L-elsbetiae_contig9809:3853..4647Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9809 3854..4647 -
1622817042.593504-UTR-L-elsbetiae_contig9809:5405..54281622817042.593504-UTR-L-elsbetiae_contig9809:5405..5428Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9809 5406..5428 -
1691684003.8889277-UTR-L-elsbetiae_contig9809:5405..54281691684003.8889277-UTR-L-elsbetiae_contig9809:5405..5428Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9809 5406..5428 -
1622817042.6103475-UTR-L-elsbetiae_contig9809:6748..68341622817042.6103475-UTR-L-elsbetiae_contig9809:6748..6834Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9809 6749..6834 -
1691684003.9013531-UTR-L-elsbetiae_contig9809:6748..68341691684003.9013531-UTR-L-elsbetiae_contig9809:6748..6834Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9809 6749..6834 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817042.5467622-CDS-L-elsbetiae_contig9809:4647..47401622817042.5467622-CDS-L-elsbetiae_contig9809:4647..4740Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9809 4648..4740 -
1691684003.8532493-CDS-L-elsbetiae_contig9809:4647..47401691684003.8532493-CDS-L-elsbetiae_contig9809:4647..4740Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9809 4648..4740 -
1622817042.559034-CDS-L-elsbetiae_contig9809:5090..52431622817042.559034-CDS-L-elsbetiae_contig9809:5090..5243Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9809 5091..5243 -
1691684003.866142-CDS-L-elsbetiae_contig9809:5090..52431691684003.866142-CDS-L-elsbetiae_contig9809:5090..5243Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9809 5091..5243 -
1622817042.5767753-CDS-L-elsbetiae_contig9809:5369..54051622817042.5767753-CDS-L-elsbetiae_contig9809:5369..5405Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9809 5370..5405 -
1691684003.8777227-CDS-L-elsbetiae_contig9809:5369..54051691684003.8777227-CDS-L-elsbetiae_contig9809:5369..5405Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9809 5370..5405 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9809.18763.1

>prot_L-elsbetiae_contig9809.18763.1 ID=prot_L-elsbetiae_contig9809.18763.1|Name=mRNA_L-elsbetiae_contig9809.18763.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=94bp
MSCLLVYRSVPMYLRLMLIWTITTAFSGVFQPLLWLDNASDSVTEQWLVW
TLLALSIAGMAGNILGALTVFPSAGASSGKARRRRYKTPVKES*
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mRNA from alignment at L-elsbetiae_contig9809:3854..6834-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9809.18763.1 ID=mRNA_L-elsbetiae_contig9809.18763.1|Name=mRNA_L-elsbetiae_contig9809.18763.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2981bp|location=Sequence derived from alignment at L-elsbetiae_contig9809:3854..6834- (Laminarionema elsbetiae ELsaHSoW15)
GACCTACACCGCGTTTACTCTGGCCTTCGTTGTGTACGAGTGCACGATTA
GCGGTAGCCTGGTGCACGCACGCCCTCCAGCAGAATGTGAGTTGTGCTTT
TAAGGCTGCACCACGCTTCCCAGCTCTGAAATCCCGGGTAGAGATTCCAG
GAGAGAACCCGAAGCGACGCTTGTTTTTTTATAGCGGTTTTGTTCTGCCA
TCTCCCACAGAAAATGCCGTAGGTCTCTCTTCAGCAGCCCTATCTCACCG
CAAAATCGAATTTTGCGCTTCGAAACAAGAACCGATACCAATTCCTCAGT
CATTCCTTGGGGTTGACTGTCATAAGGTAGCTCTTGCTGTTGGTACCAGA
GCAGAGAGCAATATGTACCACGGTCGACCGTTTGAATCCTAGCCTGCACC
GAGCGAACTCCATTTTTGTGTGTCCGCAAAAGCGAGGGCATGCACGCTTG
GGGTCGACAGCAGCGAGGGTCGGCTATCGAGCGCTCGAGGTCTTTGGAGA
CATGCTCTTCGGCTGAGCAACCCTTATACTTCTAAGATCCTTGGAATAAT
ATAGTCGAAGCACAGCAGGATCGGTGCACAATAGCTTTCGATCTGGAGAG
TTTCGTGTTTTTCAACCGTCTCAAAACGCCCTATTTTCTGTCAACCTGGT
CGGGTTTTGCTGAACAAACAAAAGCACACACGCCTTGCGAACGAGCCCAA
AGAGCAGACACGCGAAGATAGCCAGTGTGCGATTTTGTGCTGGCAAATTA
TGTTTATAAGTTTTTTCAAACGACCCCAAATACAAACGACGGAGCACCTA
TTTTTACATAGAATGCGCGTGCCCGGCCCGTCCTTTCAAACAGCGGTCTC
CTGCCGAGCGTTTTCTCTCAATGTTAGGAGGAGGGGTACGGTTGTACATA
TGTATGTCGATCAGAGTTTATTGGTCCTACATACACCAATGTTTATCTCC
CAAGGTGGCGCAGACTAAAGTAGTTCCCACGGCTGCCGAAACCTCGCCGA
GAACGAGTACCAGCTATGTACCTTGTATTCCTCGGGTGGCAGCACCGTCT
TGCTTGTTGTGGCGACACCATACCTACCGATGTTACCATTTGAAGGTTGA
TCGCATATGGTGCAGTCGTACATAGCTGTGTCGTGGTCATCATGATCATG
CTGGATTTGCTCGACGTGCTTGAACCACAAATGCTGCGGGTTTGTGTGGT
CCAAACTTGTCAAAATCAAAGCGCGTACAGAGTATGCACCACATTACACA
CCAGCCAGACTCTGCAACTCTTTTGCTGTGATAAACTTCGTCATGCTGCT
GTTTTCATAATGAAACGTCCGACTTCCGCTTTTTTGCCATGCAATTCTCC
TTGGGTTGGGATACCACACATCGACTGCATCATACTCCGCGGCGACCGTT
TTCCAGTGTTCAAGATCGTCGCGTACAGCATGTCCTGTCTTCTCGTCTAC
CGCAGCGTGCCGATGGTGAGGGTGATTTCGTGATAATTATCTCGGTAATT
TGCACTCTATATTTTGGTGCGAGTCGAGCTCGAGTATACCCCAGCTCCTG
ATGCAAAACACAATCTGACGTGGTCGTTCCCTTTCGTCCAGTATCTACGA
CTTATGCTCATCTGGACGATCACTACAGCCTTCAGCGGGGTTTTCCAGCC
CCTCTTGTGGCTGGATAACGCTAGTGACTCTGTCACGGAACAATGGCTTG
TTTGGACGCTACTGGCGCTCAGCATCGCAGGGATGGCGGGAAACGTAAGT
GGTCGTCAGTGTTAGCCGGTGATACACAACACGAGCCAACCTAGACACTG
CTGTGAGGTTCACGTTTTTTGGCCAGGGTGTTTGCCGGCGGGTTGTGGAT
GTATTGATTTCGCTACCTATGCTGTGACTGGTTATGTTACAAGCAAGGAT
AAAATAGAAGACATGAAACATCCCAAACGCCCCATGTATGCATATGCGGT
CGAGATATGGAGCCTGTACTACCAGCTTTTAGCTCGTGTGCTGGCCGTGC
TGGGTGTTAGGTCGACAAATTGCATACACTTGCTGCTGTACGCCCATTCT
ATCTACTATTCCGTTGCGTATGGCGATTCCTGCTCTTCTTGCAGATTTTG
GGAGCCCTGACAGTATTCCCGTCCGCTGGAGCATCATCTGGCAAGGCTAG
ACGTCGCCGGTACAAAACGCCAGTGAAAGAAAGTTGACCAGCAGAGGTCA
TTCGCGGATGTCAAGCGCAACAATCGACACTCGATATGCAGCAAATCTAG
ATGGGGATTTTTTACGCGGACAACGGCAGTAGTTCAGGAAAATGATGTGA
GCAAGTTAGCTGATAAGCGTAGAAAGAACTGCCAAGCATCATGTTTCACG
TAAGTCCGGTGTCGGTCGCTCTACTGCTTCCTCGTGAGGAAGGGTATGGT
ATAGGGCCGCGTTCAAAACCCAACACCAAAGAGTAAGATTACGCACGCCA
TGGTCTCGTTTTCCCAGCGAACCGTACTGGCACCGTCGGCTCTGGTGTCC
CAAAAGGCGGCGGTCGTGGAGTGAACCTGTCCTGATGGTCGCAATTCCGG
CCGTTCCACTATTAAGCAACTGACCTGTCGCGTGGGATATATAGTTTTGC
TTAAATTGGTATCGCATAGGTGTAGCTCGGGTGTGCGCTCAGAAACTCAC
GAAGGTTTGCTTTTGTTTTCAAACAAGTCTGCAAGCTGCTTTGCGGGCAC
ATTGGTCGTTGCTTCATAAAAGTACATGTAAACGTGCATACAATGAACCC
TATGCGCTTATGACTGGGTCTTACCCCAAACTTGAAGTTTTCACACAAAC
TCGTCAACCCCGCGATGCAGTGGGAGGTAATCGCGTCAGTCCAGCCCGCC
ACCTGCTGACGATGCATTACATATGGTCGGGGTAAGGTGGTGTGTGAGAA
GTGCACGGGCTGAGATACCACCAACTATTGAGTACAAATTGATGAATGTT
GTTCACCTGGTGGCAAAAAAGCCACAGCTCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9809:3854..6834-

>mRNA_L-elsbetiae_contig9809.18763.1 ID=mRNA_L-elsbetiae_contig9809.18763.1|Name=mRNA_L-elsbetiae_contig9809.18763.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=564bp|location=Sequence derived from alignment at L-elsbetiae_contig9809:3854..6834- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCTGTCTTCTCGTCTACCGCAGCGTGCCGATGATGTCCTGTCTTCT
CGTCTACCGCAGCGTGCCGATGTATCTACGACTTATGCTCATCTGGACGA
TCACTACAGCCTTCAGCGGGGTTTTCCAGCCCCTCTTGTGGCTGGATAAC
GCTAGTGACTCTGTCACGGAACAATGGCTTGTTTGGACGCTACTGGCGCT
CAGCATCGCAGGGATGGCGGGAAACTATCTACGACTTATGCTCATCTGGA
CGATCACTACAGCCTTCAGCGGGGTTTTCCAGCCCCTCTTGTGGCTGGAT
AACGCTAGTGACTCTGTCACGGAACAATGGCTTGTTTGGACGCTACTGGC
GCTCAGCATCGCAGGGATGGCGGGAAACATTTTGGGAGCCCTGACAGTAT
TCCCGTCCGCTGGAGCATCATCTGGCAAGGCTAGACGTCGCCGGTACAAA
ACGCCAGTGAAAGAAAGTTGAATTTTGGGAGCCCTGACAGTATTCCCGTC
CGCTGGAGCATCATCTGGCAAGGCTAGACGTCGCCGGTACAAAACGCCAG
TGAAAGAAAGTTGA
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