mRNA_L-elsbetiae_contig9807.18762.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9807.18762.1
Unique NamemRNA_L-elsbetiae_contig9807.18762.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9807.18762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9807contigL-elsbetiae_contig9807:5409..6196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817042.48946-CDS-L-elsbetiae_contig9807:5408..55721622817042.48946-CDS-L-elsbetiae_contig9807:5408..5572Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9807 5409..5572 -
1691684003.8164062-CDS-L-elsbetiae_contig9807:5408..55721691684003.8164062-CDS-L-elsbetiae_contig9807:5408..5572Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9807 5409..5572 -
1622817042.5006056-CDS-L-elsbetiae_contig9807:6051..61961622817042.5006056-CDS-L-elsbetiae_contig9807:6051..6196Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9807 6052..6196 -
1691684003.8251536-CDS-L-elsbetiae_contig9807:6051..61961691684003.8251536-CDS-L-elsbetiae_contig9807:6051..6196Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9807 6052..6196 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9807.18762.1prot_L-elsbetiae_contig9807.18762.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9807 5409..6196 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9807.18762.1

>prot_L-elsbetiae_contig9807.18762.1 ID=prot_L-elsbetiae_contig9807.18762.1|Name=mRNA_L-elsbetiae_contig9807.18762.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
RSSIPLVFFHPSRHCHGVRSLVPRSKAERHWPETRRGRLHETLMPPSGGQ
NSPAAGQCPFRPPSSTAANAASPSRGDLDLLASMVASGGKGKEGEARTVS
EAQ
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mRNA from alignment at L-elsbetiae_contig9807:5409..6196-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9807.18762.1 ID=mRNA_L-elsbetiae_contig9807.18762.1|Name=mRNA_L-elsbetiae_contig9807.18762.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=788bp|location=Sequence derived from alignment at L-elsbetiae_contig9807:5409..6196- (Laminarionema elsbetiae ELsaHSoW15)
AGGTCATCAATACCTCTCGTATTTTTCCATCCGTCGCGTCATTGCCACGG
CGTCAGGAGTTTGGTCCCAAGATCCAAAGCGGAAAGGCATTGGCCTGAGA
CACGACGGGGGCGTTTGCACGAGACACTGATGCCACCGAGCGGAGGTGAG
GATCGGCACTGGACATTATACTAGGGGAGAGGCATTAGCCCGCATTGACC
CGAGACACGACGGGGGCATTTGCCCGAGACCCTGATGCCACCGAGCGGGG
GTGAGGGTCTACATTGAACATTATACATACAAGCACCGTAAGATGTTTGC
AGACCTCTCTCTCAAAGGAGATCTCCCCTTGGCTTAGATACTTAAGAATG
GGAATCCGGGCACGCCCACCCTGTGTAGCAGGCGTGTACATGCTCGCGGA
GGGCAGAGGTGCACCGCCGTATGATAGCTTGCGTGTGGCTGCTTGGTTGC
CGGGCCTTCCTCTGTCATCACCTTATTTCCTGCAGCTTGGGGCCACTTAC
CGCGAACAACGGCCACACGATTGCCTGCACACACTCCTGCAGGCTGCCCT
AAGCCCACCCGCCCACCCTACCCACACTCCCACCCTCCTGCTGGCCATCT
ACTAATTTCTCCGTATGCCGCAAGGTCAAAATTCTCCGGCGGCAGGGCAA
TGTCCGTTCCGACCCCCTTCATCAACTGCAGCCAATGCCGCTAGTCCTAG
CCGGGGGGACCTCGACCTCCTTGCAAGCATGGTGGCCTCGGGGGGCAAGG
GTAAAGAGGGCGAAGCTCGCACCGTCAGCGAGGCGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9807:5409..6196-

>mRNA_L-elsbetiae_contig9807.18762.1 ID=mRNA_L-elsbetiae_contig9807.18762.1|Name=mRNA_L-elsbetiae_contig9807.18762.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig9807:5409..6196- (Laminarionema elsbetiae ELsaHSoW15)
AGGTCATCAATACCTCTCGTATTTTTCCATCCGTCGCGTCATTGCCACGG
CGTCAGGAGTTTGGTCCCAAGATCCAAAGCGGAAAGGCATTGGCCTGAGA
CACGACGGGGGCGTTTGCACGAGACACTGATGCCACCGAGCGGAGAGGTC
ATCAATACCTCTCGTATTTTTCCATCCGTCGCGTCATTGCCACGGCGTCA
GGAGTTTGGTCCCAAGATCCAAAGCGGAAAGGCATTGGCCTGAGACACGA
CGGGGGCGTTTGCACGAGACACTGATGCCACCGAGCGGAGGTCAAAATTC
TCCGGCGGCAGGGCAATGTCCGTTCCGACCCCCTTCATCAACTGCAGCCA
ATGCCGCTAGTCCTAGCCGGGGGGACCTCGACCTCCTTGCAAGCATGGTG
GCCTCGGGGGGCAAGGGTAAAGAGGGCGAAGCTCGCACCGTCAGCGAGGC
GCAGGTCAAAATTCTCCGGCGGCAGGGCAATGTCCGTTCCGACCCCCTTC
ATCAACTGCAGCCAATGCCGCTAGTCCTAGCCGGGGGGACCTCGACCTCC
TTGCAAGCATGGTGGCCTCGGGGGGCAAGGGTAAAGAGGGCGAAGCTCGC
ACCGTCAGCGAGGCGCAG
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