mRNA_L-elsbetiae_contig9807.18761.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9807.18761.1
Unique NamemRNA_L-elsbetiae_contig9807.18761.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9807.18761.1 vs. uniprot
Match: A0A836CN33_9STRA (Nitric-oxide synthase (NADPH) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN33_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 4.900e-10
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:  124 MRGLVLFGEGAETTARPLTDVEVVIIKDSYNKMLAWSDVVMEFIVERLYFLVP 282
            M+   L G  A     PLTDVE+VI+KDSYNKMLAW ++ ME++ ER +FL P
Sbjct:  324 MKAATLGGVRAMAAEHPLTDVEIVIVKDSYNKMLAWHEIAMEYLAERFFFLYP 376
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BLAST of mRNA_L-elsbetiae_contig9807.18761.1 vs. uniprot
Match: A0A836CN69_9STRA (Nitric-oxide synthase (NADPH) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN69_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 7.190e-8
Identity = 24/37 (64.86%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:  172 PLTDVEVVIIKDSYNKMLAWSDVVMEFIVERLYFLVP 282
            PL DVE+VI+KDSYNKMLAW ++ ME++ ER +FL P
Sbjct:  241 PLNDVEIVIVKDSYNKMLAWHEIAMEYLAERFFFLYP 277
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9807.18761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CN33_9STRA4.900e-1054.72Nitric-oxide synthase (NADPH) n=1 Tax=Tribonema mi... [more]
A0A836CN69_9STRA7.190e-864.86Nitric-oxide synthase (NADPH) n=1 Tax=Tribonema mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9807contigL-elsbetiae_contig9807:200..4568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size291
Cds size285
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9807.18761.1prot_L-elsbetiae_contig9807.18761.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9807 200..4562 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817042.4160018-CDS-L-elsbetiae_contig9807:199..2811622817042.4160018-CDS-L-elsbetiae_contig9807:199..281Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9807 200..281 -
1691684003.77541-CDS-L-elsbetiae_contig9807:199..2811691684003.77541-CDS-L-elsbetiae_contig9807:199..281Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9807 200..281 -
1622817042.4277594-CDS-L-elsbetiae_contig9807:1096..12121622817042.4277594-CDS-L-elsbetiae_contig9807:1096..1212Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9807 1097..1212 -
1691684003.7856038-CDS-L-elsbetiae_contig9807:1096..12121691684003.7856038-CDS-L-elsbetiae_contig9807:1096..1212Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9807 1097..1212 -
1622817042.439196-CDS-L-elsbetiae_contig9807:4475..45621622817042.439196-CDS-L-elsbetiae_contig9807:4475..4562Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9807 4476..4562 -
1691684003.7978613-CDS-L-elsbetiae_contig9807:4475..45621691684003.7978613-CDS-L-elsbetiae_contig9807:4475..4562Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9807 4476..4562 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817042.4526517-UTR-L-elsbetiae_contig9807:4562..45681622817042.4526517-UTR-L-elsbetiae_contig9807:4562..4568Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9807 4563..4568 -
1691684003.8072872-UTR-L-elsbetiae_contig9807:4562..45681691684003.8072872-UTR-L-elsbetiae_contig9807:4562..4568Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9807 4563..4568 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9807.18761.1

>prot_L-elsbetiae_contig9807.18761.1 ID=prot_L-elsbetiae_contig9807.18761.1|Name=mRNA_L-elsbetiae_contig9807.18761.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=95bp
MRLEANARHRAGVFGRGRLSTRCCAVRSKVKVLDRRNSSMRGLVLFGEGA
ETTARPLTDVEVVIIKDSYNKMLAWSDVVMEFIVERLYFLVPTIP
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mRNA from alignment at L-elsbetiae_contig9807:200..4568-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9807.18761.1 ID=mRNA_L-elsbetiae_contig9807.18761.1|Name=mRNA_L-elsbetiae_contig9807.18761.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4369bp|location=Sequence derived from alignment at L-elsbetiae_contig9807:200..4568- (Laminarionema elsbetiae ELsaHSoW15)
GTTGAGATGAGGCTAGAGGCGAACGCCAGACATCGAGCCGGGGTGTTCGG
GCGTGGGAGGCTATCCACGAGGTGCTGCGCGGTCCGCAGTAAGGTATGCT
TGTATGGGTGCGTGTAGGTCAGCGCATGGATTGCCAGAGGTGTGTGTGTG
TTTGTGTGTGTGTGTGTATCCTTTTCTTAATTAACGTGTGTGTATAATAA
ATATACTCAATGTTGTTGTTGTTATTGTTTCTCACATTAGCTCTCTAATC
CAAAACATCCTTGGGGGCCCCCGTGGTCACGAAACAAGGCACACTCGACG
CCGCGGAAGAAACATAAAACAATAGTATAGTACATGCGCGCCCGGCGGTA
CTTAACTGGACCCCGGGGGGTCTTGCGTCTCGCCAGCACAAAATCAAAGG
CATGTACATAGTCCAGGCTGCAATGATATTTGGCGCTTGGGTGGTGCCTT
GTATTTACGCACCCGCGGACGGGAAAACAGTACACAGCACAGCCCCGGGA
AGTTGATTTGGAAGCACAAAGTATCTATGGCCAGAGCCTACTCAGCAGGG
GTTGTTCGCCGAACACCATTATAAAGATGGGTGGGCTGATCACTACGTAC
CATACACCCCTTCGCACAGAATCGAGTCGGAAAACTAGAACAGAAACGAG
AACCAGAACAACGGCTTGCCCGTATTCCCGTGTTGCTAGCGACGGGCGAT
CCCGTCCGTGCCTTCCCGGGTCATCTTTCTGACCGCATATCATCCCTTAT
CTCCCCGACGGTCTCTCTGACCACCAAAGGCAGCAAGCAGCATGTACAGA
CATTTTCATGCACATACTTCCAGATACAATTGTGTACGACCTAGACGAGT
ACGCACATACGAAGAGTTTTATGGTACACGACAGCGCCGCCTGCGTGATT
CTCAAACTGCTGTGTCAATGAAGGGTGCATTAAGCGTTGCTACTGTTGTT
GTTGTTGTTGGTGGTGGTGGTGGTGTTGTCGTTGTCGTTGCTTTGTTTTC
TTCACATTCAAAACCGTTCCGATCTCTTCGCCCCAGCACCTCTTCATGTC
CGTATTATTCCAACACCTGATGGGGCCGATTCCGGTGTCACAAGGCTAGA
TTATATGTGCCTCAAAAAGGTTACTTCGTACGAAAATAAATAGACTCGAC
GGGTTAGCAAAGCGATAAAATTAGTGTGGGGTAATTGTCTCTCGGGTGAA
TGCATAGATAGGCTATATCGTGGGTCAGCTTGGGTCAACGCATACTTTCG
CCCGGCCCAAAGTATATCTACACACAAGAGTATTACCTCTTACCATGGCC
TCCCGAGTTCAACTGATCACCACCCCCGTTTTTAATGACTTTTTAAAAAT
AAACAATGAATCAAAGATGGAACCTACCCCACACTAGAGCAAGGACTCAA
CATGGGGTTCAAACGGTATTCCATACAGTGACGTAATATTTGGCGAAGCG
AGCAGAAAACAGAAGACCCCTGCAAAGATTTGCGAGGTCGGCCAACAGTT
AATGACTTTCGAGCTACATACACTCTTTTGTTCCTGGCCCGGCAGCAGCT
GCATATGTTCCTCCTCTGCACTGACGAGGCGCAAACCATTCGAAAAACAT
CTGTTTTCTGTTTGGTGCCCGCTGTTGAGGCCAAATGTAATCTATGGTTA
TGACTGAAAGGAGTTGGAGGTCAACTGCCCACGGTGCCCCCCAAAATATA
GTCATTCTTGGAGGTAGCCGGGGACACTATGCTTGAGCCAGAGTTCAAAA
GCCGGAAGGCATTCTTCTTTTCGGGGCTGATTTTACATAGATAGGCTGCT
GTCGAGCACACAGAATCAAGTCCACCACAGCGAGATTGCCTCACCCTGGG
TATAGATCCCGTGTTCTCCACAAGGAACTTTCGGCCTGGTTTCGGGTGAC
TGCTGCTGGTGTATTGTTCCATTGAGGAAGGTGTGCGGCGCCTTTGTTTT
TGCCTTGGAGCGACATCCAGCTATAATTTCGACAGGCCGTAAATGCTGCT
GTTGGCGTTTTTTTCCTCGTTTTTCGTACATAAGAGAATGACCGAGTTAT
TTCAATTACCCGTTGAATAATAGAGACACATCGCCAAAATGTTAATTAAG
ACTTGCGGACTTGTGACGGCAAGAAGCGGCAGAGGAAACTTGGATATTAC
ACGAATTACTACTGCTGTTGAGCAGGATTCTGTCAGACGCGAGAATGAGA
AGCTCGTTTTGAAAAAATTGGCAACGCAAGCTGGATTTTCGGCCGGGAAT
AGCGAATAGAGCCTTGACCCATGCTTTACCTTTCTTGTCAGCGGGGGCCA
ACTACTGTGCGTACGTTTTTTCAAGCCGAAGAGCCCCAGTAGCTGTTGTT
TGAGTGGACCTTTCCACTTTGTCGACAAAGCATAAAGTTATGAGAATATT
CTCGAACATTCTCTGGTTCTCTATCGGTCTAGATTGATAACCCAACGATT
GCCAGGCGGTCGGTGGGGGGGTCGGTGGGCGGAGATACCCCGGTTTAAGC
ACGGCCCTGGCCAATATGTTTTTGCTGCCCTATTCCCCAACCCTATAACC
CTACCCCTGCGGGTCTTAACATCAAAAACAAAATTCGAAAATCGAAATCG
AAATGAATGATTTCGATTTCGATTTTTCATTTGCATGCTGCGGCTGTAAA
GGCCCGAAATGGCCCGGTGCCATGCTTCCAACGATGAACATGGCAGCTAC
CAACGATGAACATGGCAGCTACGGGGCATCCGAGCCATCGAAAGACAGCT
CCGGACAACCTCCCAGTTGAGGCCTACACGTGGATGCTGGCTTATTTGCG
AGGCGCGACGTGTTCACTGACGTTGCTCAACTCCTGCGTTGCTCAACTCC
TGAACAGCCAACAGGCTGCAACGTGGCAACGTGTCACGATTGCCAGCAGC
TTCACCCAAGGAATTATCCGGGAAGGCCGACCCAAAAGCAGCTAATCACA
CCCTCAAGGAAGCTTGTTTTGTACATGCAAGCCGAAAATAAAAAGCTAAC
GAGCTGTACATATGTACTGAAAACTTACCGATGAGAGCATTCTCAATTGC
TTTGAGCGAAACCCTCTTGTAACGCACTTATAACGGCAAACCAACCACGC
TTAATACCTGGAAAATCCGAACCACACTGAAATCACGGAACGGAGGGACG
AGTATCACAGAGAACAAGGACGCTCGCTGCGCGACAACCCGCTGTGCGAG
CTGCCGCTGCACTATTTACTACATACGCAGACGACGTCGAGTGCCTGCAT
TGCATCGCCCACCGGCGACGCTCGCGCCCCTCAAGTTTGTTTTTCCTACT
ACAATTAACGCCAGCCGTCTACGCCCCCTCCCATCCCGTATCGAAACTCT
GTGCAGGTGAAAGTGCTGGACCGACGAAATTCCAGCATGCGGGGCCTCGT
GCTCTTCGGGGAGGGTGCCGAGACCACGGCGCGCCCGCTCACCGATGTCG
AAGTGGTCATCATCAAAGACAGGTGAAGCGAGCGGGGTGTTTCCGCGCGG
GGAGGGGGGGGGGGCACGGCGGCGAGTGGACGATTTCTTGGGTTCCAAGA
CGTGTTAGCCTATTGTTTTCGGTGAAGGCCACCCCTCCCTGTGCGAAACG
TCTTGCGTATCCCCCTCCCGCCGTATGCACGTACAGCCCATCTTTTTTCG
AATGTTCTGTCGCCAGAGGAGGCTATATTTTTACTTCTATAAGTAACCAC
ACAAACAGCGGAGCCTCTGGCTCGCCAATACAAAAACTAAAACTAAAACT
AAGGAAGCAGCCTAGGGTAACCTACAGACCCTAGGCAATCTGTGTTTATA
GTAACCAAACAAACAGCGCAGCCTCCGGCTGGCCGAGCACCTCTCACGGC
CCTTCCTCCCTCGGTCTGGCGCAACCTTAAACCTCCGCATGTGGGACGGA
GAGGCTCAAAGTTACCTCCCCCCCCCCAGTCGAGTGCAGGCGCGCGATTA
GGAACATACATACCCCGTAGATATCATTAGTGGGCGGGCAGCCCGCCACT
GTTTCGCCGTCGCTAGCCACCCGGTGCCTGCCGTTCATAGCCCAGTTCCG
TGCTTGTGGGCACCCCGGGGCTTCTTCGTGCCGCGACGCGCCACCAACCG
CGTGCTCTATCTGCCTGCCTCCCCCCCCCCCCAGCTCCTGTATGTAGGTT
CCGCGGTGCCGTTTCGCTCACTCTATTGTGTGTCGATAACGACGCTCGTT
GTTGTCCTTTGGTGTGTCCGTGCGGGTGGATGGATCGATGAACACTGGTG
GGTTGACTCTTTTTTATTCGCGTCGCCGAGGTGTCAGCTACAACAAGATG
CTAGCTTGGTCGGACGTCGTGATGGAGTTCATCGTGGAGCGGCTGTACTT
CCTGGTGCCGACGATCCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9807:200..4568-

>mRNA_L-elsbetiae_contig9807.18761.1 ID=mRNA_L-elsbetiae_contig9807.18761.1|Name=mRNA_L-elsbetiae_contig9807.18761.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig9807:200..4568- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGCTAGAGGCGAACGCCAGACATCGAGCCGGGGTGTTCGGGCGTGG
GAGGCTATCCACGAGGTGCTGCGCGGTCCGCAGTAAGATGAGGCTAGAGG
CGAACGCCAGACATCGAGCCGGGGTGTTCGGGCGTGGGAGGCTATCCACG
AGGTGCTGCGCGGTCCGCAGTAAGGTGAAAGTGCTGGACCGACGAAATTC
CAGCATGCGGGGCCTCGTGCTCTTCGGGGAGGGTGCCGAGACCACGGCGC
GCCCGCTCACCGATGTCGAAGTGGTCATCATCAAAGACAGGTGAAAGTGC
TGGACCGACGAAATTCCAGCATGCGGGGCCTCGTGCTCTTCGGGGAGGGT
GCCGAGACCACGGCGCGCCCGCTCACCGATGTCGAAGTGGTCATCATCAA
AGACAGCTACAACAAGATGCTAGCTTGGTCGGACGTCGTGATGGAGTTCA
TCGTGGAGCGGCTGTACTTCCTGGTGCCGACGATCCCGCTACAACAAGAT
GCTAGCTTGGTCGGACGTCGTGATGGAGTTCATCGTGGAGCGGCTGTACT
TCCTGGTGCCGACGATCCCG
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