mRNA_L-elsbetiae_contig9806.18760.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9806.18760.1
Unique NamemRNA_L-elsbetiae_contig9806.18760.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9806.18760.1 vs. uniprot
Match: W2TLB0_NECAM (Atlastin-1 family protein n=2 Tax=Strongylida TaxID=6308 RepID=W2TLB0_NECAM)

HSP 1 Score: 55.1 bits (131), Expect = 2.680e-6
Identity = 37/101 (36.63%), Postives = 49/101 (48.51%), Query Frame = 1 
Query:   46 LPSPRLVYLS*GQPRADHGKSPLGYAGRHNLCGGCLPIRRKSSLMSWFLLSLE--GSKIDHDDEGTLDKLGGADGSAGGFIWKGGHKPHTQGMSIWSEPFI 342
            L  P L  +      AD   + +G AG + +         KS L+++FL  L+      D DD G+LD L     S  GF W+GG K  T G+ IWSEPFI
Sbjct:   43 LNVPALEEILLDPKVADKKVAVIGVAGAYRM--------GKSFLLNFFLRYLQWRSDGSDEDDSGSLDWLSVHPDSLKGFSWRGGSKRDTNGILIWSEPFI 135
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BLAST of mRNA_L-elsbetiae_contig9806.18760.1 vs. uniprot
Match: A0A016U540_9BILA (GB1/RHD3-type G domain-containing protein n=4 Tax=Ancylostoma ceylanicum TaxID=53326 RepID=A0A016U540_9BILA)

HSP 1 Score: 54.7 bits (130), Expect = 3.760e-6
Identity = 38/109 (34.86%), Postives = 52/109 (47.71%), Query Frame = 1 
Query:   46 LPSPRLVYLS*GQPRADHGKSPLGYAGRHNLCGGCLPIRRKSSLMSWFLLSLE--GSKIDHDDEGTLDKLGGADGSAGGFIWKGGHKPHTQGMSIWSEPFIKQTSPREK 366
            L  P L  +      AD   + +G AG + +         KS L+++FL  L+      D DD G LD L  +  S  GF W+GG K  T G+ IWSEPFI +    E+
Sbjct:   44 LNVPALEKILLDPKVADKKVAVIGVAGAYRM--------GKSFLLNFFLRYLQWRADGSDEDDSGGLDWLTVSPDSLQGFSWRGGSKRDTNGILIWSEPFIMKDKSGEE 144
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BLAST of mRNA_L-elsbetiae_contig9806.18760.1 vs. uniprot
Match: A0A0C2GMN2_9BILA (Guanylate-binding protein n=1 Tax=Ancylostoma duodenale TaxID=51022 RepID=A0A0C2GMN2_9BILA)

HSP 1 Score: 51.6 bits (122), Expect = 4.340e-5
Identity = 34/94 (36.17%), Postives = 47/94 (50.00%), Query Frame = 1 
Query:   91 ADHGKSPLGYAGRHNLCGGCLPIRRKSSLMSWFLLSLE--GSKIDHDDEGTLDKLGGADGSAGGFIWKGGHKPHTQGMSIWSEPFIKQTSPREK 366
            AD   + +G AG + +         KS L+++FL  L+      D  D G LD L  +  S  GF W+GG K  T G+ IWSEPFI +    E+
Sbjct:   59 ADKKVAVIGVAGAYRM--------GKSFLLNFFLRYLQWRADGSDEVDSGGLDWLSVSPDSLQGFSWRGGSKRDTNGILIWSEPFIMKDKSGEE 144
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BLAST of mRNA_L-elsbetiae_contig9806.18760.1 vs. uniprot
Match: A0A7I4YNW7_HAECO (GB1/RHD3-type G domain-containing protein n=2 Tax=Trichostrongyloidea TaxID=6314 RepID=A0A7I4YNW7_HAECO)

HSP 1 Score: 50.8 bits (120), Expect = 8.100e-5
Identity = 32/86 (37.21%), Postives = 45/86 (52.33%), Query Frame = 1 
Query:   91 ADHGKSPLGYAGRHNLCGGCLPIRRKSSLMSWFLLSLEGSKIDHDDEGT--LDKLGGADGSAGGFIWKGGHKPHTQGMSIWSEPFI 342
            AD   + +G AG + +         KS L+++FL  L+      DD+G   +D LG    S  GF W+GG K  T G+ IWS+PFI
Sbjct:   60 ADKKVAVIGVAGAYRM--------GKSFLLNFFLRYLQWRADGSDDDGFSGMDWLGTHPDSLKGFSWRGGSKRDTNGILIWSQPFI 137
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9806.18760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
W2TLB0_NECAM2.680e-636.63Atlastin-1 family protein n=2 Tax=Strongylida TaxI... [more]
A0A016U540_9BILA3.760e-634.86GB1/RHD3-type G domain-containing protein n=4 Tax=... [more]
A0A0C2GMN2_9BILA4.340e-536.17Guanylate-binding protein n=1 Tax=Ancylostoma duod... [more]
A0A7I4YNW7_HAECO8.100e-537.21GB1/RHD3-type G domain-containing protein n=2 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9806contigL-elsbetiae_contig9806:4185..5171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size370
Cds size192
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9806.18760.1prot_L-elsbetiae_contig9806.18760.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9806 4362..5171 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817042.3500795-UTR-L-elsbetiae_contig9806:4184..43611622817042.3500795-UTR-L-elsbetiae_contig9806:4184..4361Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9806 4185..4361 +
1691684003.7418368-UTR-L-elsbetiae_contig9806:4184..43611691684003.7418368-UTR-L-elsbetiae_contig9806:4184..4361Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9806 4185..4361 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817042.3605967-CDS-L-elsbetiae_contig9806:4361..43991622817042.3605967-CDS-L-elsbetiae_contig9806:4361..4399Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9806 4362..4399 +
1691684003.7558606-CDS-L-elsbetiae_contig9806:4361..43991691684003.7558606-CDS-L-elsbetiae_contig9806:4361..4399Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9806 4362..4399 +
1622817042.373752-CDS-L-elsbetiae_contig9806:5017..51711622817042.373752-CDS-L-elsbetiae_contig9806:5017..5171Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9806 5018..5171 +
1691684003.7656245-CDS-L-elsbetiae_contig9806:5017..51711691684003.7656245-CDS-L-elsbetiae_contig9806:5017..5171Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9806 5018..5171 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9806.18760.1

>prot_L-elsbetiae_contig9806.18760.1 ID=prot_L-elsbetiae_contig9806.18760.1|Name=mRNA_L-elsbetiae_contig9806.18760.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=64bp
MSWFLLSLEGSKIDHDDEGTLDKLGGADGSAGGFIWKGGHKPHTQGMSIW
SEPFIKQTSPREKD
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mRNA from alignment at L-elsbetiae_contig9806:4185..5171+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9806.18760.1 ID=mRNA_L-elsbetiae_contig9806.18760.1|Name=mRNA_L-elsbetiae_contig9806.18760.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=987bp|location=Sequence derived from alignment at L-elsbetiae_contig9806:4185..5171+ (Laminarionema elsbetiae ELsaHSoW15)
GGATAAACCACGACCGCTGAAGCTTGGAAGTGTAGTGGAAGGCGGTTACC
ATCGCCCCGACTCGTTTACCTTTCATAAGGACAACCTCGAGCGGATCATG
GAAAAAGTCCCCTTGGGTACGCCGGTAGGCATAATCTCTGTGGTGGGTGC
TTACCGATCCGGAGGAAATCTTCGCTCATGTCTTGGTTCCTGCTCAGCCT
CGAGGGTTCCAAGATGTAAGATTATTGGGTTATGAGCGAGTCGCTTGGCA
GGTAGGTGCATCTGGAATGTTCAGCACCTGCTTATACCGTGTAACTGTAG
GTTTTAGATATATCTACGATAGATATAGACTAGAGCTCTTCATTTTCCTC
CTGTGGTCAATGACTATCTAAATGGGCAGCAATATTGAGTACGCCCCCCC
CACCTGATGTATAGCAGAACGAAACATCAAGCAAATAAACAAGGGAAGAG
CGGAACACGCGACGCATGGCCTTTAACCAAAAGGAGTAAGTGCGACATAG
TAAGGACAATTGAAGAAAAAGTGGGAGGAATATGATAGTCTAGACTACAC
GGGTATTCGAAGAAATAACCAGCGGCAACGGCAAGAAGGAGGTAATACTT
TGTACGACATAGTACTAGGTCTAGAGACATCCCTAGATAACAACATATGC
ATATTATAGTCTACAACACAAGCCGCGTACGAGCTTTCTATCACTACTGC
TGATGAGTATTGTTGCGCAACTGCTTGCCGAGAACAACTGCCGCCGTCAA
CATACATACAACAATCGCATAGTGTATCGCGTGTGACGACTCACAGCGAT
TCGAACGTGATTTTGTGACTATTCTCGACTCAGTGATCATGACGACGAGG
GCACACTAGACAAACTTGGAGGTGCAGACGGCAGCGCCGGTGGGTTTATC
TGGAAAGGTGGCCACAAGCCACACACGCAAGGCATGTCAATATGGTCTGA
GCCGTTCATCAAACAAACGAGCCCCAGGGAGAAAGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9806:4185..5171+

>mRNA_L-elsbetiae_contig9806.18760.1 ID=mRNA_L-elsbetiae_contig9806.18760.1|Name=mRNA_L-elsbetiae_contig9806.18760.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=384bp|location=Sequence derived from alignment at L-elsbetiae_contig9806:4185..5171+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTTGGTTCCTGCTCAGCCTCGAGGGTTCCAAGATATGTCTTGGTTC
CTGCTCAGCCTCGAGGGTTCCAAGATTGATCATGACGACGAGGGCACACT
AGACAAACTTGGAGGTGCAGACGGCAGCGCCGGTGGGTTTATCTGGAAAG
GTGGCCACAAGCCACACACGCAAGGCATGTCAATATGGTCTGAGCCGTTC
ATCAAACAAACGAGCCCCAGGGAGAAAGACTGATCATGACGACGAGGGCA
CACTAGACAAACTTGGAGGTGCAGACGGCAGCGCCGGTGGGTTTATCTGG
AAAGGTGGCCACAAGCCACACACGCAAGGCATGTCAATATGGTCTGAGCC
GTTCATCAAACAAACGAGCCCCAGGGAGAAAGAC
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