mRNA_L-elsbetiae_contig980.18755.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig980.18755.1
Unique NamemRNA_L-elsbetiae_contig980.18755.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig980.18755.1 vs. uniprot
Match: A0A6H5KZD4_9PHAE (DUF4201 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZD4_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.160e-29
Identity = 66/82 (80.49%), Postives = 73/82 (89.02%), Query Frame = 1
Query:    1 LSGLEEDLNRERDCLTRAKKERDNLRREVTNLRQSQGFANSDLLILDYEQRKSHLKKLGQKLEDMRSKHHRLLLEQVSTVSR 246
            LS LE+DLN+ERD LTRAKK+RD LRREV +LRQSQGFANSDLLILD+EQRKSHLKKLGQKLE+M+SKHH LLLEQ S   R
Sbjct: 1089 LSILEDDLNQERDRLTRAKKDRDTLRREVASLRQSQGFANSDLLILDFEQRKSHLKKLGQKLEEMKSKHHLLLLEQESIEER 1170          
BLAST of mRNA_L-elsbetiae_contig980.18755.1 vs. uniprot
Match: A0A7S2XTZ5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XTZ5_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.780e-12
Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = 1
Query:    1 LSGLEEDLNRERDCLTRAKKERDNLRREVTNLRQSQGFANSDLLILDYEQRKSHLKKLGQKLEDMRSKHHRLLLEQ 228
            L+ L+  L  ERD L+++KKERD +R E   LRQ QGF NSDLL++D+EQRK  +K+L  K+ +++ +H  LL++Q
Sbjct:   14 LAELDAQLGLERDRLSKSKKERDAIRTENNTLRQKQGFTNSDLLVVDFEQRKVDIKQLQDKVAELKERHS-LLMQQ 88          
BLAST of mRNA_L-elsbetiae_contig980.18755.1 vs. uniprot
Match: A0A7S2AZF2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AZF2_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 6.020e-10
Identity = 31/69 (44.93%), Postives = 51/69 (73.91%), Query Frame = 1
Query:    1 LSGLEEDLNRERDCLTRAKKERDNLRREVTNLRQSQGFANSDLLILDYEQRKSHLKKLGQKLEDMRSKH 207
            L+ L+ +L++ERD LT+AK+E++ LR E   L+Q QGF NSDLL++D+E RK  L  + +K+ D++ ++
Sbjct:  354 LASLDSELSKERDLLTKAKREKEALRAENAALKQKQGFTNSDLLVVDFESRKQELISMREKIADLKQRY 422          
BLAST of mRNA_L-elsbetiae_contig980.18755.1 vs. uniprot
Match: A0A7S0E726_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E726_9CRYP)

HSP 1 Score: 55.1 bits (131), Expect = 3.970e-7
Identity = 33/81 (40.74%), Postives = 52/81 (64.20%), Query Frame = 1
Query:    1 LSGLEEDLNRERDCLTRAKKERDNLRREVTNLRQSQGFANSDLLILDYEQRKSHLKKLGQKLEDMRSKHHRLLLEQVSTVS 243
            L+ LE DL+ +RD LT+AK +RDNLR E   LR   G   ++ L+ D+++RK  +  +   LE+++ +H R L EQ+ T+S
Sbjct:  115 LAELEADLSTQRDALTKAKHDRDNLRSENQKLRGEAGLIGNNELLRDFDRRKKEIISMQGHLEELKERH-RTLREQILTMS 194          
BLAST of mRNA_L-elsbetiae_contig980.18755.1 vs. uniprot
Match: A0A812XBA7_SYMMI (Ccdc96 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XBA7_SYMMI)

HSP 1 Score: 54.3 bits (129), Expect = 6.520e-7
Identity = 30/79 (37.97%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    1 LSGLEEDLNRERDCLTRAKKERDNLRREVTNLRQSQGFANSDLLILDYEQRKSHLKKLGQKLEDMRSKHHRLLLEQVST 237
            L G++  +   R  LT +K +RD +R E   L++ +GFA SD+LI+D+E+RKS + +L   ++++R +H  LL +Q++T
Sbjct:   90 LLGVDRSIVHARSNLTVSKHDRDVVREENVELKRQRGFATSDMLIIDFEKRKSTIDELSHSIKELRERHF-LLSQQIAT 167          
BLAST of mRNA_L-elsbetiae_contig980.18755.1 vs. uniprot
Match: T0QQL0_SAPDV (DUF4201 domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QQL0_SAPDV)

HSP 1 Score: 54.7 bits (130), Expect = 6.880e-7
Identity = 30/68 (44.12%), Postives = 44/68 (64.71%), Query Frame = 1
Query:    1 LSGLEEDLNRERDCLTRAKKERDNLRREVTNLRQSQGFANSDLLILDYEQRKSHLKKLGQKLEDMRSK 204
            LS L+E+L   RD LT+ KK+RD LR     ++  QGFANS LL+ DYE+RK  ++    +LE ++ +
Sbjct:  152 LSELDEELTESRDVLTKHKKDRDALRHTQAKMKHQQGFANSHLLMADYEKRKVDIEDYQGRLEQLKQR 219          
BLAST of mRNA_L-elsbetiae_contig980.18755.1 vs. uniprot
Match: W4HB69_9STRA (DUF4201 domain-containing protein n=3 Tax=Aphanomyces TaxID=100860 RepID=W4HB69_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 3.620e-6
Identity = 27/52 (51.92%), Postives = 36/52 (69.23%), Query Frame = 1
Query:    1 LSGLEEDLNRERDCLTRAKKERDNLRREVTNLRQSQGFANSDLLILDYEQRK 156
            L+ L+EDL + RD LT+ KKERD +R     ++  QGF NS LL+ DYE+RK
Sbjct:  248 LAELDEDLTKNRDTLTKKKKERDGIRASQQKMKHQQGFGNSQLLMQDYEKRK 299          
BLAST of mRNA_L-elsbetiae_contig980.18755.1 vs. uniprot
Match: A0A3R7B1S4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7B1S4_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 3.910e-6
Identity = 27/52 (51.92%), Postives = 36/52 (69.23%), Query Frame = 1
Query:    1 LSGLEEDLNRERDCLTRAKKERDNLRREVTNLRQSQGFANSDLLILDYEQRK 156
            L+ L+EDL + RD LT+ KKERD +R     ++  QGF NS LL+ DYE+RK
Sbjct:  585 LAELDEDLTKNRDTLTKKKKERDGIRASQQKMKHQQGFGNSQLLMQDYEKRK 636          
BLAST of mRNA_L-elsbetiae_contig980.18755.1 vs. uniprot
Match: A0A397DBX2_9STRA (Protein kinase domain-containing protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DBX2_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 4.050e-6
Identity = 27/52 (51.92%), Postives = 36/52 (69.23%), Query Frame = 1
Query:    1 LSGLEEDLNRERDCLTRAKKERDNLRREVTNLRQSQGFANSDLLILDYEQRK 156
            L+ L+EDL + RD LT+ KKERD +R     ++  QGF NS LL+ DYE+RK
Sbjct: 1644 LAELDEDLTKNRDTLTKKKKERDGIRASQQKMKHQQGFGNSQLLMQDYEKRK 1695          
BLAST of mRNA_L-elsbetiae_contig980.18755.1 vs. uniprot
Match: A0A6G0WC92_9STRA (DUF4201 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WC92_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 6.080e-5
Identity = 25/52 (48.08%), Postives = 37/52 (71.15%), Query Frame = 1
Query:    1 LSGLEEDLNRERDCLTRAKKERDNLRREVTNLRQSQGFANSDLLILDYEQRK 156
            L+ L+++L + RD LT+ KKERD++R     ++  QGF NS LL+ DYE+RK
Sbjct:  250 LAELDQELTKNRDALTKKKKERDSIRASQQKMKHKQGFGNSLLLMQDYERRK 301          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig980.18755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5KZD4_9PHAE1.160e-2980.49DUF4201 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A7S2XTZ5_9STRA1.780e-1248.68Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2AZF2_9STRA6.020e-1044.93Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S0E726_9CRYP3.970e-740.74Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A812XBA7_SYMMI6.520e-737.97Ccdc96 protein n=1 Tax=Symbiodinium microadriaticu... [more]
T0QQL0_SAPDV6.880e-744.12DUF4201 domain-containing protein n=1 Tax=Saproleg... [more]
W4HB69_9STRA3.620e-651.92DUF4201 domain-containing protein n=3 Tax=Aphanomy... [more]
A0A3R7B1S4_9STRA3.910e-651.92Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A397DBX2_9STRA4.050e-651.92Protein kinase domain-containing protein n=6 Tax=A... [more]
A0A6G0WC92_9STRA6.080e-548.08DUF4201 domain-containing protein n=1 Tax=Aphanomy... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig980contigL-elsbetiae_contig980:20121..20899 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.4
Seed ortholog evalue8.5e-25
Seed eggNOG ortholog2880.D7FPR3
Preferred nameCCDC96
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF4201)
EggNOG OGs28MPJ@1,2QS75@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size264
Cds size264
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817042.0480833-CDS-L-elsbetiae_contig980:20120..202421622817042.0480833-CDS-L-elsbetiae_contig980:20120..20242Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig980 20121..20242 +
1691684003.5023324-CDS-L-elsbetiae_contig980:20120..202421691684003.5023324-CDS-L-elsbetiae_contig980:20120..20242Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig980 20121..20242 +
1622817042.0588267-CDS-L-elsbetiae_contig980:20757..208991622817042.0588267-CDS-L-elsbetiae_contig980:20757..20899Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig980 20758..20899 +
1691684003.5141628-CDS-L-elsbetiae_contig980:20757..208991691684003.5141628-CDS-L-elsbetiae_contig980:20757..20899Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig980 20758..20899 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig980.18755.1prot_L-elsbetiae_contig980.18755.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig980 20121..20899 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig980.18755.1

>prot_L-elsbetiae_contig980.18755.1 ID=prot_L-elsbetiae_contig980.18755.1|Name=mRNA_L-elsbetiae_contig980.18755.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=88bp
LSGLEEDLNRERDCLTRAKKERDNLRREVTNLRQSQGFANSDLLILDYEQ
RKSHLKKLGQKLEDMRSKHHRLLLEQVSTVSRYIKRL*
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mRNA from alignment at L-elsbetiae_contig980:20121..20899+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig980.18755.1 ID=mRNA_L-elsbetiae_contig980.18755.1|Name=mRNA_L-elsbetiae_contig980.18755.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=779bp|location=Sequence derived from alignment at L-elsbetiae_contig980:20121..20899+ (Laminarionema elsbetiae ELsaHSoW15)
CTTTCGGGCCTCGAGGAAGACCTAAACCGAGAGAGAGACTGCCTCACCCG AGCCAAGAAAGAAAGAGACAATCTCCGGCGAGAAGTGACTAATCTCAGAC AAAGTCAGGGTTTCGCTAATAGGTGAGAAGCACAGAAGATGTTTTTATCT AATTGTTTGTGGGTGCCCCTTAAATAATCTTTGATGGTGCACAGGACTTA AGATACTGGTGTTTGCCCCGGAGGTATGTACGTTTTGATGAAATTTTCTC TCCATTTCACAAAGAATTGCAGTGCCTCCAGTACCTCTGGTCGGGTTCCT GCTCTGAGTTTATCGAGCGATGCGCATTTGAAGTGGGTGCTGGATGCCGA CGTAAATAAAGAGCGAAAAACGTATCATTTGAAAACTATGTAGACTAGAC TTGACTAGACTACATAGTCTAGATCCGTTGGATTTCCGGATATAGACTAG GCGTGTGTAGCTGTAGGTGCTGCGTGTGTTACCCGCAACTAGTTGTTTTG GAATAGAGGTTAGAATTAGTGAGGCTTTCAGGGGCGCAGGCAGAGCTATA ACTGCTCACACTATGTAGACTACAGTGAGTCTGATGTGTGTGAGTGCCAT TCTAGACTAACAACAACCGTTTTGTTTCTACCCGCAGTGATCTTCTGATC CTGGACTACGAGCAGAGAAAATCCCATCTGAAAAAATTGGGCCAGAAGCT GGAAGATATGCGCTCCAAGCACCACCGGCTCCTCCTAGAGCAAGTGAGTA CTGTATCTAGATACATAAAGCGCCTATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig980:20121..20899+

>mRNA_L-elsbetiae_contig980.18755.1 ID=mRNA_L-elsbetiae_contig980.18755.1|Name=mRNA_L-elsbetiae_contig980.18755.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=528bp|location=Sequence derived from alignment at L-elsbetiae_contig980:20121..20899+ (Laminarionema elsbetiae ELsaHSoW15)
CTTTCGGGCCTCGAGGAAGACCTAAACCGAGAGAGAGACTGCCTCACCCG
AGCCAAGAAAGAAAGAGACAATCTCCGGCGAGAAGTGACTAATCTCAGAC
AAAGTCAGGGTTTCGCTAATAGCTTTCGGGCCTCGAGGAAGACCTAAACC
GAGAGAGAGACTGCCTCACCCGAGCCAAGAAAGAAAGAGACAATCTCCGG
CGAGAAGTGACTAATCTCAGACAAAGTCAGGGTTTCGCTAATAGTGATCT
TCTGATCCTGGACTACGAGCAGAGAAAATCCCATCTGAAAAAATTGGGCC
AGAAGCTGGAAGATATGCGCTCCAAGCACCACCGGCTCCTCCTAGAGCAA
GTGAGTACTGTATCTAGATACATAAAGCGCCTATAATGATCTTCTGATCC
TGGACTACGAGCAGAGAAAATCCCATCTGAAAAAATTGGGCCAGAAGCTG
GAAGATATGCGCTCCAAGCACCACCGGCTCCTCCTAGAGCAAGTGAGTAC
TGTATCTAGATACATAAAGCGCCTATAA
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