mRNA_L-elsbetiae_contig980.18757.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig980.18757.1
Unique NamemRNA_L-elsbetiae_contig980.18757.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig980.18757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig980contigL-elsbetiae_contig980:27135..27498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size366
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817041.569148-CDS-L-elsbetiae_contig980:27134..274851622817041.569148-CDS-L-elsbetiae_contig980:27134..27485Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig980 27135..27485 +
1691684003.1389534-CDS-L-elsbetiae_contig980:27134..274851691684003.1389534-CDS-L-elsbetiae_contig980:27134..27485Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig980 27135..27485 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817041.5794792-UTR-L-elsbetiae_contig980:27485..274981622817041.5794792-UTR-L-elsbetiae_contig980:27485..27498Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig980 27486..27498 +
1691684003.1497657-UTR-L-elsbetiae_contig980:27485..274981691684003.1497657-UTR-L-elsbetiae_contig980:27485..27498Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig980 27486..27498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig980.18757.1prot_L-elsbetiae_contig980.18757.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig980 27135..27485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig980.18757.1

>prot_L-elsbetiae_contig980.18757.1 ID=prot_L-elsbetiae_contig980.18757.1|Name=mRNA_L-elsbetiae_contig980.18757.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
GVSLRRRVLHPPSLLGGKLTCRYEWSTLTTKSREVGVPFVLALGGKLTCG
YETSCSSIVKLAVQKTISYGGRRQHRHFTNYLNNHTFPHICTKSKPRVGL
LCQPSPEKSVFRSFSH*
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mRNA from alignment at L-elsbetiae_contig980:27135..27498+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig980.18757.1 ID=mRNA_L-elsbetiae_contig980.18757.1|Name=mRNA_L-elsbetiae_contig980.18757.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=364bp|location=Sequence derived from alignment at L-elsbetiae_contig980:27135..27498+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGTGTCGTTGCGACGTCGTGTCCTTCACCCGCCCTCGCTCCTAGGGGG
AAAGCTGACTTGTAGATACGAATGGTCTACTCTGACAACCAAGTCCAGAG
AAGTCGGTGTTCCGTTCGTTCTCGCACTAGGGGGAAAGCTGACTTGTGGA
TACGAAACCAGTTGTTCTTCGATTGTGAAACTGGCTGTTCAAAAGACCAT
CAGCTACGGCGGGCGTAGGCAACACAGACATTTTACCAACTACCTGAACA
ATCATACTTTCCCCCATATCTGTACCAAGTCAAAGCCGAGAGTCGGCCTA
CTATGTCAACCAAGTCCAGAGAAGTCGGTGTTCCGTTCGTTCTCGCACTA
GGGGGAAAGCTGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig980:27135..27498+

>mRNA_L-elsbetiae_contig980.18757.1 ID=mRNA_L-elsbetiae_contig980.18757.1|Name=mRNA_L-elsbetiae_contig980.18757.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig980:27135..27498+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGTGTCGTTGCGACGTCGTGTCCTTCACCCGCCCTCGCTCCTAGGGGG
AAAGCTGACTTGTAGATACGAATGGTCTACTCTGACAACCAAGTCCAGAG
AAGTCGGTGTTCCGTTCGTTCTCGCACTAGGGGGAAAGCTGACTTGTGGA
TACGAAACCAGTTGTTCTTCGATTGTGAAACTGGCTGTTCAAAAGACCAT
CAGCTACGGCGGGCGTAGGCAACACAGACATTTTACCAACTACCTGAACA
ATCATACTTTCCCCCATATCTGTACCAAGTCAAAGCCGAGAGTCGGCCTA
CTATGTCAACCAAGTCCAGAGAAGTCGGTGTTCCGTTCGTTCTCGCACTA
GGGCGTGTCGTTGCGACGTCGTGTCCTTCACCCGCCCTCGCTCCTAGGGG
GAAAGCTGACTTGTAGATACGAATGGTCTACTCTGACAACCAAGTCCAGA
GAAGTCGGTGTTCCGTTCGTTCTCGCACTAGGGGGAAAGCTGACTTGTGG
ATACGAAACCAGTTGTTCTTCGATTGTGAAACTGGCTGTTCAAAAGACCA
TCAGCTACGGCGGGCGTAGGCAACACAGACATTTTACCAACTACCTGAAC
AATCATACTTTCCCCCATATCTGTACCAAGTCAAAGCCGAGAGTCGGCCT
ACTATGTCAACCAAGTCCAGAGAAGTCGGTGTTCCGTTCGTTCTCGCACT
AG
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