mRNA_L-elsbetiae_contig9797.18748.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9797.18748.1
Unique NamemRNA_L-elsbetiae_contig9797.18748.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9797.18748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9797contigL-elsbetiae_contig9797:1578..2190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size615
Cds size612
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817040.6692877-CDS-L-elsbetiae_contig9797:1577..21891622817040.6692877-CDS-L-elsbetiae_contig9797:1577..2189Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9797 1578..2189 +
1691684002.433816-CDS-L-elsbetiae_contig9797:1577..21891691684002.433816-CDS-L-elsbetiae_contig9797:1577..2189Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9797 1578..2189 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9797.18748.1prot_L-elsbetiae_contig9797.18748.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9797 1578..2189 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9797.18748.1

>prot_L-elsbetiae_contig9797.18748.1 ID=prot_L-elsbetiae_contig9797.18748.1|Name=mRNA_L-elsbetiae_contig9797.18748.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=204bp
ARSGIWGRLGPRSTGNGHSNSNNSGNPAFGRGVVARRNNSGGGGDDNQEW
SDYWAQSMSGAPSTAAPPSVFAAALRGAAEAATAAAAAGNGNGYNNGGYN
NGGGVSSEADPGLTSGLDNTAAAAAAAAAARQQPQQQHERGGRGDQAFLQ
EGAAGAWSGAAGGGRGGGGGGRGGRFGRGGGRNQTWVREGLRENGRGGAG
RGRG
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mRNA from alignment at L-elsbetiae_contig9797:1578..2190+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9797.18748.1 ID=mRNA_L-elsbetiae_contig9797.18748.1|Name=mRNA_L-elsbetiae_contig9797.18748.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=613bp|location=Sequence derived from alignment at L-elsbetiae_contig9797:1578..2190+ (Laminarionema elsbetiae ELsaHSoW15)
GCGAGGTCCGGTATCTGGGGGCGTCTTGGTCCGCGCTCTACGGGCAACGG
CCACAGTAACAGCAACAACAGCGGCAACCCTGCGTTCGGTCGTGGGGTTG
TCGCTCGCCGCAACAATAGCGGCGGTGGCGGTGACGACAACCAAGAGTGG
TCTGACTACTGGGCCCAGTCCATGAGCGGGGCTCCATCTACCGCCGCTCC
CCCGTCTGTCTTCGCCGCGGCCCTCCGAGGGGCGGCGGAAGCGGCAACGG
CTGCCGCAGCTGCCGGAAACGGTAACGGTTACAACAACGGCGGTTACAAC
AACGGTGGCGGCGTATCCAGCGAAGCAGACCCGGGCTTGACCTCCGGCCT
TGATAACACTGCCGCTGCCGCTGCCGCCGCCGCCGCCGCCAGACAGCAGC
CACAGCAGCAGCACGAGCGCGGCGGCAGGGGCGACCAAGCGTTCCTCCAG
GAGGGGGCCGCCGGTGCGTGGTCAGGCGCCGCCGGAGGGGGCAGGGGTGG
CGGCGGCGGCGGCAGAGGGGGTCGCTTTGGTCGCGGCGGCGGTCGGAATC
AAACCTGGGTCCGCGAGGGGCTGAGGGAGAACGGGAGAGGCGGAGCAGGG
CGGGGAAGAGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9797:1578..2190+

>mRNA_L-elsbetiae_contig9797.18748.1 ID=mRNA_L-elsbetiae_contig9797.18748.1|Name=mRNA_L-elsbetiae_contig9797.18748.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1224bp|location=Sequence derived from alignment at L-elsbetiae_contig9797:1578..2190+ (Laminarionema elsbetiae ELsaHSoW15)
GCGAGGTCCGGTATCTGGGGGCGTCTTGGTCCGCGCTCTACGGGCAACGG
CCACAGTAACAGCAACAACAGCGGCAACCCTGCGTTCGGTCGTGGGGTTG
TCGCTCGCCGCAACAATAGCGGCGGTGGCGGTGACGACAACCAAGAGTGG
TCTGACTACTGGGCCCAGTCCATGAGCGGGGCTCCATCTACCGCCGCTCC
CCCGTCTGTCTTCGCCGCGGCCCTCCGAGGGGCGGCGGAAGCGGCAACGG
CTGCCGCAGCTGCCGGAAACGGTAACGGTTACAACAACGGCGGTTACAAC
AACGGTGGCGGCGTATCCAGCGAAGCAGACCCGGGCTTGACCTCCGGCCT
TGATAACACTGCCGCTGCCGCTGCCGCCGCCGCCGCCGCCAGACAGCAGC
CACAGCAGCAGCACGAGCGCGGCGGCAGGGGCGACCAAGCGTTCCTCCAG
GAGGGGGCCGCCGGTGCGTGGTCAGGCGCCGCCGGAGGGGGCAGGGGTGG
CGGCGGCGGCGGCAGAGGGGGTCGCTTTGGTCGCGGCGGCGGTCGGAATC
AAACCTGGGTCCGCGAGGGGCTGAGGGAGAACGGGAGAGGCGGAGCAGGG
CGGGGAAGAGGGGCGAGGTCCGGTATCTGGGGGCGTCTTGGTCCGCGCTC
TACGGGCAACGGCCACAGTAACAGCAACAACAGCGGCAACCCTGCGTTCG
GTCGTGGGGTTGTCGCTCGCCGCAACAATAGCGGCGGTGGCGGTGACGAC
AACCAAGAGTGGTCTGACTACTGGGCCCAGTCCATGAGCGGGGCTCCATC
TACCGCCGCTCCCCCGTCTGTCTTCGCCGCGGCCCTCCGAGGGGCGGCGG
AAGCGGCAACGGCTGCCGCAGCTGCCGGAAACGGTAACGGTTACAACAAC
GGCGGTTACAACAACGGTGGCGGCGTATCCAGCGAAGCAGACCCGGGCTT
GACCTCCGGCCTTGATAACACTGCCGCTGCCGCTGCCGCCGCCGCCGCCG
CCAGACAGCAGCCACAGCAGCAGCACGAGCGCGGCGGCAGGGGCGACCAA
GCGTTCCTCCAGGAGGGGGCCGCCGGTGCGTGGTCAGGCGCCGCCGGAGG
GGGCAGGGGTGGCGGCGGCGGCGGCAGAGGGGGTCGCTTTGGTCGCGGCG
GCGGTCGGAATCAAACCTGGGTCCGCGAGGGGCTGAGGGAGAACGGGAGA
GGCGGAGCAGGGCGGGGAAGAGGG
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