mRNA_L-elsbetiae_contig9793.18747.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig9793.18747.1 vs. uniprot
Match: D8LME0_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME0_ECTSI) HSP 1 Score: 484 bits (1245), Expect = 2.710e-166 Identity = 238/283 (84.10%), Postives = 250/283 (88.34%), Query Frame = 1 Query: 1 QSVEQIVVTPDGSKLITLGSRGLGTGTFGVFSISANGDLELLQEDDHRGIIRAAFPDSSSRDMYAIDDDRSVLTHYTYDGGRFVVSQTVGGFTCVYGLGVAPDGRNVYVTDDCLYTVTNFRRDPETGSLAFESELTGDPRNGDGLGCLKSLSFTADGMWAVGLDSCDDVISILKRDLDTGTLTPTSLISTINPDGNTINIDQASATLCAPCMTWGALVVSDGSGDIYVADWSDQNILWVRADFGVGGDGSAIGTSWFSLPFKPSTLVVSRDLQTVYAANKVGD 849 QSVEQIVVTPDGSKLITLGSRGLG GTFGVFSISA+GDL+LLQEDDHRGIIRA FPDSSSRD+YAIDDDRSVLTHYTYDG RFVVSQTVGGFTC+YGLGVAPDG NVYV DDCLYTVTNFRRDP+TGSL F+ EL+GDPRNGDGLGCLKSLSFT DG W VGLDSCDDVISILKRDLDTGTLTPT+LI+T NPDGNTINID+ TW ALVVSDG GDIYVADWSD ILWVRADFGVGGDGS I T+WFSL FKPSTL+ S DLQTVY ANK D Sbjct: 114 QSVEQIVVTPDGSKLITLGSRGLGRGTFGVFSISADGDLQLLQEDDHRGIIRAGFPDSSSRDLYAIDDDRSVLTHYTYDGSRFVVSQTVGGFTCLYGLGVAPDGANVYVADDCLYTVTNFRRDPDTGSLTFQDELSGDPRNGDGLGCLKSLSFTEDGAWVVGLDSCDDVISILKRDLDTGTLTPTTLINTDNPDGNTINIDK----------TWSALVVSDGLGDIYVADWSDSKILWVRADFGVGGDGSVISTNWFSLSFKPSTLIASPDLQTVYVANKEND 386 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9793.18747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig9793.18747.1 >prot_L-elsbetiae_contig9793.18747.1 ID=prot_L-elsbetiae_contig9793.18747.1|Name=mRNA_L-elsbetiae_contig9793.18747.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=284bp QSVEQIVVTPDGSKLITLGSRGLGTGTFGVFSISANGDLELLQEDDHRGIback to top mRNA from alignment at L-elsbetiae_contig9793:221..6378+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig9793.18747.1 ID=mRNA_L-elsbetiae_contig9793.18747.1|Name=mRNA_L-elsbetiae_contig9793.18747.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6158bp|location=Sequence derived from alignment at L-elsbetiae_contig9793:221..6378+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig9793:221..6378+ >mRNA_L-elsbetiae_contig9793.18747.1 ID=mRNA_L-elsbetiae_contig9793.18747.1|Name=mRNA_L-elsbetiae_contig9793.18747.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1704bp|location=Sequence derived from alignment at L-elsbetiae_contig9793:221..6378+ (Laminarionema elsbetiae ELsaHSoW15)back to top |