mRNA_L-elsbetiae_contig9787.18744.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9787.18744.1
Unique NamemRNA_L-elsbetiae_contig9787.18744.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9787.18744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9787contigL-elsbetiae_contig9787:5027..6199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size283
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817040.3549678-CDS-L-elsbetiae_contig9787:5026..51021622817040.3549678-CDS-L-elsbetiae_contig9787:5026..5102Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9787 5027..5102 +
1691684002.225954-CDS-L-elsbetiae_contig9787:5026..51021691684002.225954-CDS-L-elsbetiae_contig9787:5026..5102Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9787 5027..5102 +
1622817040.364889-CDS-L-elsbetiae_contig9787:5994..61971622817040.364889-CDS-L-elsbetiae_contig9787:5994..6197Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9787 5995..6197 +
1691684002.2377393-CDS-L-elsbetiae_contig9787:5994..61971691684002.2377393-CDS-L-elsbetiae_contig9787:5994..6197Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9787 5995..6197 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9787.18744.1prot_L-elsbetiae_contig9787.18744.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9787 5027..6197 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9787.18744.1

>prot_L-elsbetiae_contig9787.18744.1 ID=prot_L-elsbetiae_contig9787.18744.1|Name=mRNA_L-elsbetiae_contig9787.18744.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=93bp
RTEPLLRDRLEPKSVFIQAEAGALRESEKSRNSANRASGVRAMPAARGTS
RAGGGTVRNRRARPARGCRRPSPPPASPPPRGGRGISRTIRQK
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mRNA from alignment at L-elsbetiae_contig9787:5027..6199+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9787.18744.1 ID=mRNA_L-elsbetiae_contig9787.18744.1|Name=mRNA_L-elsbetiae_contig9787.18744.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1173bp|location=Sequence derived from alignment at L-elsbetiae_contig9787:5027..6199+ (Laminarionema elsbetiae ELsaHSoW15)
AGAACAGAACCGCTACTGCGGGATAGATTGGAACCGAAGAGTGTCTTCAT
CCAAGCCGAGGCTGGGGCTCTGAGAGGTACGACAGCGGTAGATAGTCAAG
ACTTTTGGCTTGAAATCAATCCTTTTTCGACACCCGAAGGCTGCGCCTCT
CTCCCGTACTTGGGAACAAGTGAGCTAACTAGCTTGGCCGCAAGGCTCGT
ATTTCCACGTCGCCTTTAAGCCAAGACACGTCGTTACCGACTGGACAACG
ATGCAGCAAAGAGTTAATTGAACACGTTACCTTGATAGCACGTGAGATGA
CGCACGGCTGTCGGTGTTTCTGCGGCGGAACCTCATCTTGTCTGTTGGAC
ACCCACACACACACACACCCGTTTGGGTTTACACGTTTAGACGGCAAAGA
GAACCTACCGTTGCGCATGCTAGGCCCGTTATTTCAGAAAAAGGTGCCCC
TGAAGGTTCCGTTGACCGCTCCGGAAGCTAGAGCTGTCAAATGTTTGACA
GCAATAGAGCGGCACGATCATGTTGACACCCTTGGTTTGAAAACAGTTGG
GAACAGGGGAAGGGAGGTTCGGGGGAGATATCTGCACCATCGTTTGAGTT
AGTGTCCATCACTGAGACTTGGTCTTGGTGAGTGATCGGACCTTCTTCCA
TGTACCTAGCAGTTGAGTCGTGAGACGCGTGTTTAGATATTCCATGGGTG
CCCACAAAGGCTCTCAGTTAGTTCAAAATTGTGTGTAAAACACTATTATT
GACTTGTCCCCAACAGTTTTTTCTCCACACCAATAACTCTGTATCTACAT
GCATAACCCCAACCATTCAACAGCAGGCAGTGGCACCATATGCAGCGACG
AACCGAAGATCAGAGCACGCCGCCCTTGCCAGTTTCGTCTCAAATCTGCC
AACGCTCTCTCCACAACTCTCATCCCCCCGTCTCCCGCCCCCGCCCCCAC
CCTCTCGACCGCTATCAGAGTCCGAAAAAAGCAGGAATTCTGCCAATCGT
GCGTCCGGCGTCAGGGCCATGCCGGCGGCACGAGGCACAAGCCGTGCGGG
CGGCGGGACTGTCCGCAACCGCCGTGCCCGCCCGGCGCGCGGCTGCCGCA
GGCCTTCACCTCCTCCGGCTTCTCCCCCTCCACGGGGTGGCCGCGGCATC
AGCCGCACTATCCGCCAGAAGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9787:5027..6199+

>mRNA_L-elsbetiae_contig9787.18744.1 ID=mRNA_L-elsbetiae_contig9787.18744.1|Name=mRNA_L-elsbetiae_contig9787.18744.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=558bp|location=Sequence derived from alignment at L-elsbetiae_contig9787:5027..6199+ (Laminarionema elsbetiae ELsaHSoW15)
AGAACAGAACCGCTACTGCGGGATAGATTGGAACCGAAGAGTGTCTTCAT
CCAAGCCGAGGCTGGGGCTCTGAGAGAGAACAGAACCGCTACTGCGGGAT
AGATTGGAACCGAAGAGTGTCTTCATCCAAGCCGAGGCTGGGGCTCTGAG
AGAGTCCGAAAAAAGCAGGAATTCTGCCAATCGTGCGTCCGGCGTCAGGG
CCATGCCGGCGGCACGAGGCACAAGCCGTGCGGGCGGCGGGACTGTCCGC
AACCGCCGTGCCCGCCCGGCGCGCGGCTGCCGCAGGCCTTCACCTCCTCC
GGCTTCTCCCCCTCCACGGGGTGGCCGCGGCATCAGCCGCACTATCCGCC
AGAAGAGTCCGAAAAAAGCAGGAATTCTGCCAATCGTGCGTCCGGCGTCA
GGGCCATGCCGGCGGCACGAGGCACAAGCCGTGCGGGCGGCGGGACTGTC
CGCAACCGCCGTGCCCGCCCGGCGCGCGGCTGCCGCAGGCCTTCACCTCC
TCCGGCTTCTCCCCCTCCACGGGGTGGCCGCGGCATCAGCCGCACTATCC
GCCAGAAG
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