mRNA_L-elsbetiae_contig9786.18741.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9786.18741.1
Unique NamemRNA_L-elsbetiae_contig9786.18741.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9786.18741.1 vs. uniprot
Match: D7FJ04_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ04_ECTSI)

HSP 1 Score: 479 bits (1233), Expect = 1.780e-161
Identity = 257/349 (73.64%), Postives = 289/349 (82.81%), Query Frame = 3 
Query:  231 HVEPVFTLLLA-DNAPSLS---DLAQQAPDVLGAASDLADLAGSTQASAAESLSSIGNFFGSILDTVSSAKDQAADTTLGTVDAFKSQVGELTANALSPFQRLGGGVSSGLTEGLDSLKIGAQGAVEGAQTQLGESMTEKIGGPIQEGLGQLASKFGTSPAELLKEEETWASGVQQTVKQVERVATPSRLFYAENAAILPLWAAMIIWPEKELTKKVMASYAPVVLAAVIYMWLTYECFQNPASLEGFASGITNLPGLTKGFGEEVSVATAWSHFLAEDLFIGRFVYLDGMKNKVFTKHSLLLCYLFGPVGFLSHLLTRGAFGVVTP-VRDIMQAGVEQQSTTAAPKAP 1262
            H+EPV +LLLA DN PSLS   DLAQQAPDV+GAASDLAD   S QAS  ESL +IGN + SI+DTV+SAKDQA DTTLG+VDA K QV EL+ANALSPFQRLG  +S+ L+  LDSLKIGAQGAV  AQTQ G+S+ E IG P+QEG+GQ+ SKFGTSP ELLKEE+T  +GVQQ +K VERVA PS LFYAENAAILPLW  M++WPE+ LTKK+M SY P+VLAA+IYMWLTYECFQNP SL+GFASGITNL GLTKGFGEEVSVATAWSHFLAEDLFIGR+VYLDG +NK+FTKHSL+LCYLFGP GFLSHLLTRG   VV P VRDIMQ    QQ T  +PK P
Sbjct:    6 HIEPVVSLLLAADNDPSLSTLGDLAQQAPDVIGAASDLAD---SAQASVGESLGAIGNVWDSIVDTVTSAKDQATDTTLGSVDALKYQVDELSANALSPFQRLGEDISNSLSGQLDSLKIGAQGAVGEAQTQFGQSVAENIGNPVQEGMGQVFSKFGTSPEELLKEEQTLTNGVQQAIKGVERVAPPSTLFYAENAAILPLWVGMVVWPEEPLTKKIMNSYGPLVLAALIYMWLTYECFQNPVSLQGFASGITNLGGLTKGFGEEVSVATAWSHFLAEDLFIGRWVYLDGQRNKIFTKHSLVLCYLFGPAGFLSHLLTRGVTSVVKPGVRDIMQ----QQPTEPSPKTP 347
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BLAST of mRNA_L-elsbetiae_contig9786.18741.1 vs. uniprot
Match: A0A835YXE1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXE1_9STRA)

HSP 1 Score: 198 bits (503), Expect = 4.130e-53
Identity = 94/177 (53.11%), Postives = 121/177 (68.36%), Query Frame = 3 
Query:  732 SGVQQTVKQVERVATPSRLFYAENAAILPLWAAMIIWPEKELTKKVMASYAPVVLAAVIYMWLTYECFQNPASLEGFASGITNLPGLTKGFGEEVSVATAWSHFLAEDLFIGRFVYLDGMKNKVFTKHSLLLCYLFGPVGFLSHLLTRGAFGVVTP-VRDIMQAGVEQQSTTAAPKA 1259
            + +Q  V   E+VATP R F AEN  +LPLW  MI  P  +  +K+M  Y+ ++LAA++Y WLTYE  QNP SL GF+ G  +L  LTKGF +EVSVA  W+HF+A+DLF+GR+VYLD  +N V+  HSL LCYLFGP+G LSHLLTRG  G+    V DI+  GV  +  T APK+
Sbjct:  149 TALQHIVTIAEKVATPKRTFLAENILVLPLWGGMIFAPNNKYVQKIMEGYSVIILAALVYAWLTYEALQNPVSLAGFSGGAFDLDTLTKGFTQEVSVADGWAHFIAQDLFVGRWVYLDSKRNSVWAAHSLALCYLFGPIGVLSHLLTRGLSGIFRQDVTDILDIGVATERETKAPKS 325
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BLAST of mRNA_L-elsbetiae_contig9786.18741.1 vs. uniprot
Match: A0A7S3Y5E5_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5E5_HETAK)

HSP 1 Score: 198 bits (503), Expect = 2.160e-52
Identity = 93/176 (52.84%), Postives = 128/176 (72.73%), Query Frame = 3 
Query:  750 VKQVERVATPSRLFYAENAAILPLWAAMIIWPEKELTKKVMASYAPVVLAAVIYMWLTYECFQNPASLEGFASGITNLPGLTKGFGEEVSVATAWSHFLAEDLFIGRFVYLDGMKNKVFTKHSLLLCYLFGPVGFLSHLLTRGAFGVVTPVRDIMQAGVEQQSTTAAPKAPPAPKA 1277
            V  +E   TP+ +F  +N A LPLW AMI +P+  +TK +M SY P+   +++Y+W  Y  FQ+P +L+GF+  IT+LP LTKGFG EV+VATAW+HF+A+DLF+GRF+YLDG+KN VFT+HS+ L YLFGP G LSHL+TRG  G++ P +DI++AG+   S +  PK  P P A
Sbjct:  277 VSFLETKLTPNTVFTIDNVASLPLWLAMIGFPQNGVTKGLMKSYLPISAFSMLYVWSAYLAFQDPQALQGFSEAITSLPALTKGFGSEVAVATAWAHFIAQDLFVGRFIYLDGLKNGVFTRHSVALAYLFGPAGLLSHLVTRGFVGLLNPGQDIIEAGM---SASTIPKPMPQPTA 449
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BLAST of mRNA_L-elsbetiae_contig9786.18741.1 vs. uniprot
Match: A0A7S3Y5F1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5F1_HETAK)

HSP 1 Score: 175 bits (444), Expect = 1.240e-47
Identity = 81/149 (54.36%), Postives = 112/149 (75.17%), Query Frame = 3 
Query:  831 MIIWPEKELTKKVMASYAPVVLAAVIYMWLTYECFQNPASLEGFASGITNLPGLTKGFGEEVSVATAWSHFLAEDLFIGRFVYLDGMKNKVFTKHSLLLCYLFGPVGFLSHLLTRGAFGVVTPVRDIMQAGVEQQSTTAAPKAPPAPKA 1277
            MI +P+  +TK +M SY P+   +++Y+W  Y  FQ+P +L+GF+  IT+LP LTKGFG EV+VATAW+HF+A+DLF+GRF+YLDG+KN VFT+HS+ L YLFGP G LSHL+TRG  G++ P +DI++AG+   S +  PK  P P A
Sbjct:    1 MIGFPQNGVTKGLMKSYLPISAFSMLYVWSAYLAFQDPQALQGFSEAITSLPALTKGFGSEVAVATAWAHFIAQDLFVGRFIYLDGLKNGVFTRHSVALAYLFGPAGLLSHLVTRGFVGLLNPGQDIIEAGM---SASTIPKPMPQPTA 146
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BLAST of mRNA_L-elsbetiae_contig9786.18741.1 vs. uniprot
Match: W7U388_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U388_9STRA)

HSP 1 Score: 183 bits (464), Expect = 7.510e-47
Identity = 108/265 (40.75%), Postives = 154/265 (58.11%), Query Frame = 3 
Query:  462 VDAFKSQVGELTANALSPFQRLGGGVSSGLTEGLDSLKIGAQGAVEGAQTQLGESMTEKIGGPIQEGLGQLASKFGTSPA-ELLKEEETWASGVQQTVKQVERVATPSRLFYAENAAILPLWAAMIIWPEKELTKKVMASYAPVVLAAVIYMWLTYECFQNPASLEGFASGITNLPGLTKGFGEEVSVATAWSHFLAEDLFIGRFVYLDGMKNKVFTKHSLLLCYLFGPVGFLSHLLTRGAFGVVT-PVRDIMQAGVEQQSTTAA 1250
            + A KSQVGE+  + LS       G+ S  TE    + I  Q  +E  + QLG+  +             + S+F      EL K+ ET    +   ++ ++ V TP  LF AEN  ILP WA++I+ P     K +++SY PV++AA+ Y W  Y  FQ+PA+LEGFAS I++L  L+KG G E   ATAW+HF+A+DLF+GR+++LDG++N V+T HSL L +LFGP G LSHLLTR    +    + DIM  G    + +AA
Sbjct:  192 LSALKSQVGEIVGSRLS-------GLGSAFTEKAGDVLIPYQPFLEQTKRQLGDKFS-------------VVSQFAEQATQELSKDAET----LSPALRALKTVGTPRNLFNAENIVILPFWASVILAPSNTFVKTLVSSYLPVLVAALAYTWSAYLAFQDPAALEGFAS-ISDLSALSKGLGTEAGTATAWAHFIAQDLFVGRWIFLDGIRNGVWTAHSLTLAFLFGPTGILSHLLTRSFVKIFRWDIADIMTTGSRAVAPSAA 431
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BLAST of mRNA_L-elsbetiae_contig9786.18741.1 vs. uniprot
Match: A0A7S0KR27_MICPS (Hypothetical protein n=2 Tax=Micromonas TaxID=38832 RepID=A0A7S0KR27_MICPS)

HSP 1 Score: 154 bits (390), Expect = 1.150e-39
Identity = 73/166 (43.98%), Postives = 103/166 (62.05%), Query Frame = 3 
Query:  759 VERVATPSRLFYAENAAILPLWAAMIIWPEKELTKKVMASYAPVVLAAVIYMWLTYECFQNPASLEGFASGITNLPGLTKGFGEEVSVATAWSHFLAEDLFIGRFVYLDGMKNKVFTKHSLLLCYLFGPVGFLSHLLTRGAFGVVTPVR--DIMQAGVEQQSTTAA 1250
            +E + TP  +F  ENAAI P W  MI +P+ ++T+ VM SYA  +L   +Y++LTY  F +P  +E F++G  +L  L+KGF  E  +A  W+HF+A DLF+GR++YLD  KN VF  HSLLLC  FGP G +SH LTRG   +    +  D+M   +  +  T A
Sbjct:   56 LEWIPTPETVFDVENAAIFPFWLGMIAFPKNKVTETVMGSYAVPILLGFVYIYLTYYSFSDPRIIEAFSTGKPDLAALSKGFSYEWCMAVGWAHFIAMDLFVGRWIYLDARKNDVFAAHSLLLCLFFGPTGVISHTLTRGVTSLARGKKLPDVMSGALRPERATGA 221
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BLAST of mRNA_L-elsbetiae_contig9786.18741.1 vs. uniprot
Match: A0A0G4GWJ9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GWJ9_VITBC)

HSP 1 Score: 142 bits (357), Expect = 1.220e-34
Identity = 68/133 (51.13%), Postives = 88/133 (66.17%), Query Frame = 3 
Query:  777 PSRLFYAENAAILPLWAAMIIWPEKELTKKVMASYAPVVLAAVIYMWLTYECFQNPASLEGFASGITNLPGLTKGFGEEVSVATAWSHFLAEDLFIGRFVYLDGMKNKVFTKHSLLLCYLFGPVGFLSHLLTR 1175
            PS +F A NA +LP WA M+I P  ++T+K+M S  P ++  ++Y+WL       P ++EG   G   LP LTK F  E  VAT W HFLAEDLF+GR+VYLDG KN V  +HS LL  LFGP+G +SHL+TR
Sbjct:   97 PSAVFTASNAFVLPFWALMVIAPGAQVTEKLMRSVTPFIVLGLLYLWLAVISSTFPEAVEGLGQGAGQLPVLTKAFSLEPVVATGWVHFLAEDLFVGRWVYLDGRKNDVPIRHSCLLSLLFGPLGVVSHLVTR 229
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BLAST of mRNA_L-elsbetiae_contig9786.18741.1 vs. uniprot
Match: C1N0R2_MICPC (Predicted protein (Fragment) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N0R2_MICPC)

HSP 1 Score: 129 bits (324), Expect = 1.410e-31
Identity = 61/130 (46.92%), Postives = 81/130 (62.31%), Query Frame = 3 
Query:  786 LFYAENAAILPLWAAMIIWPEKELTKKVMASYAPVVLAAVIYMWLTYECFQNPASLEGFASGITNLPGLTKGFGEEVSVATAWSHFLAEDLFIGRFVYLDGMKNKVFTKHSLLLCYLFGPVGFLSHLLTR 1175
            +F  EN AI PLW  MI  P+  +T+ VM S     +   +Y++LT+  F +P  L+ F++G  +L  L KGF  E  VA  W+HF+A DLF GR++YLD  KN VF  HSLLLC  FGP G +SH+ TR
Sbjct:    3 VFNVENVAIFPLWLGMIFAPKSGVTRAVMDSALVPCVCGFVYVYLTWYSFHDPRILDAFSTGKPDLAALAKGFSYEWCVAVGWAHFIAMDLFAGRWIYLDARKNDVFAAHSLLLCLFFGPTGAISHVTTR 132
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BLAST of mRNA_L-elsbetiae_contig9786.18741.1 vs. uniprot
Match: K8ECG3_9CHLO (Uncharacterized protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8ECG3_9CHLO)

HSP 1 Score: 124 bits (310), Expect = 1.310e-29
Identity = 62/138 (44.93%), Postives = 88/138 (63.77%), Query Frame = 3 
Query:  831 MIIWPEKELTKKVMASYAPVVLAAVIYMWLTYECFQNPASLEGFASGIT-NLPGLTKGFGEEVSVATAWSHFLAEDLFIGRFVYLDGMKNKVFTKHSLLLCYLFGPVGFLSHLLTRGAFGVVTP--VRDIMQAGVEQQ 1235
            MI +P+   TK VM S A  +   +IY +L Y+ F  P  LE F+SG   +L  LTKGF  E +VA  W+HF+A DL  GR++Y DG+KN   T+HSL+L   FGP+G +SH+LTRG  G+     V DI+++G++ +
Sbjct:    1 MIGFPKSTFTKTVMLSPATSIACGLIYGYLAYQSFLEPEILEAFSSGAKQSLSSLTKGFSYETTVAVGWAHFIAMDLLAGRYIYFDGLKNDFITRHSLVLTLFFGPLGVVSHVLTRGIVGLTRSGKVEDILESGLKSE 138
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BLAST of mRNA_L-elsbetiae_contig9786.18741.1 vs. uniprot
Match: A0A7R9TAY7_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TAY7_9VIRI)

HSP 1 Score: 124 bits (312), Expect = 2.160e-29
Identity = 60/136 (44.12%), Postives = 84/136 (61.76%), Query Frame = 3 
Query:  786 LFYAENAAILPLWAAMIIWPEKELTKKVMASYAPVVLAAVIYMWLTYECFQNPASLEGFASGITNLPGLTKGFGEEVSVATAWSHFLAEDLFIGRFVYLDGMKNKVFTKHSLLLCYLFGPVGFLSHLLTRGAFGVV 1193
            +F A NAA  PLW  MI  P   + ++V+AS   V      Y  L      +PA+L+GF++  T + G+ +  G     A  W HF+A+D F+GR+VYLDG+++ VF++HSLLLC+LFGP+G LSHL TR A   V
Sbjct:   18 VFTAANAACFPLWLGMIGAPGNSVVRRVVASPYSVAPFGAAYAALLLPALSDPAALDGFSNSAT-VAGVAQALGSPTGAAVGWVHFIAQDFFVGRYVYLDGLRHDVFSRHSLLLCFLFGPLGVLSHLATRAATAAV 152
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9786.18741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ04_ECTSI1.780e-16173.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YXE1_9STRA4.130e-5353.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3Y5E5_HETAK2.160e-5252.84Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y5F1_HETAK1.240e-4754.36Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7U388_9STRA7.510e-4740.75Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S0KR27_MICPS1.150e-3943.98Hypothetical protein n=2 Tax=Micromonas TaxID=3883... [more]
A0A0G4GWJ9_VITBC1.220e-3451.13Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
C1N0R2_MICPC1.410e-3146.92Predicted protein (Fragment) n=1 Tax=Micromonas pu... [more]
K8ECG3_9CHLO1.310e-2944.93Uncharacterized protein n=1 Tax=Bathycoccus prasin... [more]
A0A7R9TAY7_9VIRI2.160e-2944.12Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9786contigL-elsbetiae_contig9786:605..5512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score481.9
Seed ortholog evalue3.6e-133
Seed eggNOG ortholog2880.D7FJ04
Hectar predicted targeting categorychloroplast
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006082,GO:0006629,GO:0006714,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009507,GO:0009526,GO:0009536,GO:0009687,GO:0009688,GO:0009941,GO:0009987,GO:0016053,GO:0016106,GO:0016108,GO:0016109,GO:0016114,GO:0016116,GO:0016117,GO:0016122,GO:0016123,GO:0019222,GO:0019752,GO:0031323,GO:0031967,GO:0031975,GO:0032787,GO:0032928,GO:0042440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043288,GO:0043289,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046148,GO:0046165,GO:0046394,GO:0050789,GO:0050794,GO:0065007,GO:0071704,GO:0072330,GO:0090322,GO:1901576,GO:1901615,GO:1901617,GO:1902644,GO:1902645,GO:2000377
EggNOG free text desc.xanthophyll metabolic process
EggNOG OGs28P8V@1,2QVVZ@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons9
Model size1905
Cds size1458
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817040.1239142-UTR-L-elsbetiae_contig9786:604..6991622817040.1239142-UTR-L-elsbetiae_contig9786:604..699Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9786 605..699 +
1691684002.0392992-UTR-L-elsbetiae_contig9786:604..6991691684002.0392992-UTR-L-elsbetiae_contig9786:604..699Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9786 605..699 +
1622817040.2350938-UTR-L-elsbetiae_contig9786:5160..55121622817040.2350938-UTR-L-elsbetiae_contig9786:5160..5512Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9786 5161..5512 +
1691684002.149143-UTR-L-elsbetiae_contig9786:5160..55121691684002.149143-UTR-L-elsbetiae_contig9786:5160..5512Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9786 5161..5512 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817040.1364002-CDS-L-elsbetiae_contig9786:699..8871622817040.1364002-CDS-L-elsbetiae_contig9786:699..887Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9786 700..887 +
1691684002.0539932-CDS-L-elsbetiae_contig9786:699..8871691684002.0539932-CDS-L-elsbetiae_contig9786:699..887Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9786 700..887 +
1622817040.1485996-CDS-L-elsbetiae_contig9786:1487..16411622817040.1485996-CDS-L-elsbetiae_contig9786:1487..1641Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9786 1488..1641 +
1691684002.0637577-CDS-L-elsbetiae_contig9786:1487..16411691684002.0637577-CDS-L-elsbetiae_contig9786:1487..1641Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9786 1488..1641 +
1622817040.1598454-CDS-L-elsbetiae_contig9786:1945..19901622817040.1598454-CDS-L-elsbetiae_contig9786:1945..1990Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9786 1946..1990 +
1691684002.0735135-CDS-L-elsbetiae_contig9786:1945..19901691684002.0735135-CDS-L-elsbetiae_contig9786:1945..1990Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9786 1946..1990 +
1622817040.1730583-CDS-L-elsbetiae_contig9786:2590..27641622817040.1730583-CDS-L-elsbetiae_contig9786:2590..2764Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9786 2591..2764 +
1691684002.084562-CDS-L-elsbetiae_contig9786:2590..27641691684002.084562-CDS-L-elsbetiae_contig9786:2590..2764Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9786 2591..2764 +
1622817040.1842334-CDS-L-elsbetiae_contig9786:3608..36981622817040.1842334-CDS-L-elsbetiae_contig9786:3608..3698Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9786 3609..3698 +
1691684002.0957184-CDS-L-elsbetiae_contig9786:3608..36981691684002.0957184-CDS-L-elsbetiae_contig9786:3608..3698Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9786 3609..3698 +
1622817040.1947036-CDS-L-elsbetiae_contig9786:3811..41291622817040.1947036-CDS-L-elsbetiae_contig9786:3811..4129Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9786 3812..4129 +
1691684002.1049728-CDS-L-elsbetiae_contig9786:3811..41291691684002.1049728-CDS-L-elsbetiae_contig9786:3811..4129Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9786 3812..4129 +
1622817040.2048962-CDS-L-elsbetiae_contig9786:4347..45001622817040.2048962-CDS-L-elsbetiae_contig9786:4347..4500Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9786 4348..4500 +
1691684002.115786-CDS-L-elsbetiae_contig9786:4347..45001691684002.115786-CDS-L-elsbetiae_contig9786:4347..4500Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9786 4348..4500 +
1622817040.2156494-CDS-L-elsbetiae_contig9786:4613..47871622817040.2156494-CDS-L-elsbetiae_contig9786:4613..4787Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9786 4614..4787 +
1691684002.1270485-CDS-L-elsbetiae_contig9786:4613..47871691684002.1270485-CDS-L-elsbetiae_contig9786:4613..4787Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9786 4614..4787 +
1622817040.225438-CDS-L-elsbetiae_contig9786:4998..51601622817040.225438-CDS-L-elsbetiae_contig9786:4998..5160Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9786 4999..5160 +
1691684002.1367776-CDS-L-elsbetiae_contig9786:4998..51601691684002.1367776-CDS-L-elsbetiae_contig9786:4998..5160Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9786 4999..5160 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9786.18741.1prot_L-elsbetiae_contig9786.18741.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9786 700..5160 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9786.18741.1

>prot_L-elsbetiae_contig9786.18741.1 ID=prot_L-elsbetiae_contig9786.18741.1|Name=mRNA_L-elsbetiae_contig9786.18741.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=486bp
MGSLQSNVMCALWGASCLQACMAFYSSAPHQLAVFRRPTHLKMVAHVEPV
FTLLLADNAPSLSDLAQQAPDVLGAASDLADLAGSTQASAAESLSSIGNF
FGSILDTVSSAKDQAADTTLGTVDAFKSQVGELTANALSPFQRLGGGVSS
GLTEGLDSLKIGAQGAVEGAQTQLGESMTEKIGGPIQEGLGQLASKFGTS
PAELLKEEETWASGVQQTVKQVERVATPSRLFYAENAAILPLWAAMIIWP
EKELTKKVMASYAPVVLAAVIYMWLTYECFQNPASLEGFASGITNLPGLT
KGFGEEVSVATAWSHFLAEDLFIGRFVYLDGMKNKVFTKHSLLLCYLFGP
VGFLSHLLTRGAFGVVTPVRDIMQAGVEQQSTTAAPKAPPAPKAVTFVSP
PSSEAKDLVTEAKREADEILKQARSAGASLLEEAERDSLLILKGAEVEKE
ALLRASKTGPTPDTKTGAAATEPKAEPAKTKPAAT*
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mRNA from alignment at L-elsbetiae_contig9786:605..5512+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9786.18741.1 ID=mRNA_L-elsbetiae_contig9786.18741.1|Name=mRNA_L-elsbetiae_contig9786.18741.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4908bp|location=Sequence derived from alignment at L-elsbetiae_contig9786:605..5512+ (Laminarionema elsbetiae ELsaHSoW15)
AATTTTGTGTATTTAGCATCATACCGCTCCCCTTGGGCAGAGGGCAGAGG
GCTTATTGCTTATTAAGAGCGCGGAAGGTCACCCACGAAAGCGCAATGGG
AAGTCTACAAAGCAATGTGATGTGTGCCTTGTGGGGGGCTTCCTGCCTCC
AAGCTTGCATGGCTTTCTATTCATCTGCTCCACACCAGCTGGCTGTCTTC
CGTCGTCCAACTCATTTGAAGATGGTTGCGCACGTCGAGCCGGTCTTCAC
CCTCTTGTTGGCTGACAATGCACCATCGCTGAGGTACGCGGTACTGCTGT
AGATAGTATATCGGCTAAACTATGAAGTGGTCATCCGCGCTTCAAGCTTT
ATCTCAGGAGGCATTTCCGTAGAGCTAGAGTACATTTTATAGTATCCCGT
AGGTTCAACTCTCACACATGTGATGTGCAACCCCACACAAGCATTTCGCA
CGCAACACGCGTCAAGCAGGATCCTAGCTCAGATATGAAGGGGGATGCCA
TGGAGTAATAGGCGCACAGAACAGCAGAGGTTCAGTGTGGTAGATAGGAC
AAATAAAAGACAAAGTATCTCGCTGTCTGCAGAGCAAGTAGTCTAGATAT
GTAGACTATTAATTACTTCGTACATCGTAATAGGCGCACAGAACAGCAGA
GGTTCTGTGGCAGATCTAGGGACAAATAAAAGACAAATTATCTCGCTGTC
TGCAGACAATGTATCTCTATCTAGTATATATATATATATATTTTACGTAA
ATTCATTATCGTACTTACATACAGAACCACACAAAAAAAGTACGATAGTT
TTGTACGTACATGGTAGTATGAATGTACTGGAGCGGCCGGCGCGGCGAAT
ATAACATCGGCAACCCCTGCCCCGAATTTTCAGCGATCTAGCACAACAAG
CCCCGGATGTCTTGGGGGCTGCTTCGGACCTAGCGGATCTAGCGGGATCC
ACTCAGGCTTCTGCCGCCGAATCGCTGAGCTCGATCGGTAATTTTTTTGG
TTCCATCTTGGACACAGTTTCGTCGGCCAAAGATCAGGTGTGTGGCGAAG
GGGCAGAGCGGCGCCTGCCGTGCATAGGTAGCGCGATGCCCGGTGTTGGA
GAAGTTTCCTCCCGTGCGTAAGTGTCTCTTTTGCGTGACACGCTGTACAC
GATTACCGTAATCATGTGGGTAATCGCACCCCCTTGTTGGCGTTTTTCTA
AAGCATATTTCTCCACAACCAGGCAGTGGTACCCTCCTGGTTGTGGAGAA
ATACGCTATAGAAAAACGCTAACACGGGGGTGCGATAACCCACATAATTA
CTACAGTAACTAACAAACTTCATGTCGTGCCATCGTTCCAGGCTGCCGAC
ACCACTCTGGGAACGGTCGACGCGTTTAAATCCCAGGTACATATCTATAT
ATGTAGTGCATATGTACGACAAGAGAGAAAAGGGACATGTTTAGAGCAGC
CACCCCCCTGCTTTCCTGCATTACGATTAGGATTTTTGAGTTTTCTTGGC
AGTTTCGAGTGAGAAGGAACACAATAGACGATTAGGTACTTTTATTACAC
AGAGCGAGCAGGGTGAGGCACGTGCTTCCGGAAACTTCAGCACACGCTCG
GGTTCACCCTCAGGGTAGTTCCGCCCTCGATGTGTTTTTAAATTCAGCCG
CATGTGTATAGATGGTGGATGGGGATGTGATTTTTCGTTTGGTAAATTAT
TTATTATTATTTCTGGTTTTGGAGCTCATGGACTTAAGGATGTAGGTTAC
TTGAGGCAGGTGGCTTTTGCGGTGGGGGGAGATATGCAGATGAAGCAACC
CTTCATAGACAGCCTTACCGCTCCCCCCAGCCACCAGTGTACCCGATTTG
TAAACCCAGAGCTCACATTCGCGCCCGCAGTCACTCGCAACCAATGAGGT
GGGAGAGTCGGCGTAAGCGAAGCACAGCTCGGCCAGGAAATCCCGACGCT
GTAAGTTATGCTCTCGCTATCTTTCGCCATCGGTAGGTGGGCGAGTTGAC
TGCGAACGCACTCTCTCCCTTTCAACGGCTTGGGGGGGGGGTTTCCAGTG
GTCTGACCGAGGGGCTGGACAGCTTGAAAATCGGGGCGCAGGGTGCAGTC
GAAGGAGCTCAGACACAGCTAGGCGAATCTATGACGGAAAAGATCGGGGG
ACCAATTCAGGTATGTATGTACCGTAGGTGACACAAGATACCACACCCCC
TGGACATATTTTCAAAGTTTAATTCCTCCGCAGCAAGAAGAGTGTCAGTG
CCGAAAGAGGGTGGGGTTGGAAAGATCTAGTCGAGGGCTATCGGAAAATG
TGTCATTTGGTGCTGGCACCCTCTTCGTTACGGAGTAATGGAGTCTAAAA
GTCTATCCAGGGGGTGTGGTATCTTGGTGTCACCTACGGTAGGCGCGTAG
GAATACCTATCGCGTGGGAACCCTTGATCCATAAAATGAATTAGAAGGTA
GCTTTCGCCTGTGTTCGAGTAAAATGCATTGGGTTCCAAACACACAACTT
TGTTTTTCTTCTTCACATTTATTCCGGTGCTCGATGGGCTCCTTGCCACG
AGGGCATATTGCAAGAGTACTGAACCGTGGTCTCATGCAGAAGAGTTCCT
TTCCCCAAGGCCCCCACTCCCCCCTTCTGCGGTGCCTGCCTAAGATTTTT
GTCGCAAGAAGGGTTCAGCCGTCCCCTTCCCTCGTCGACGGTGAGGTCGA
ACTTTGTGTACACACGCCAAGCGCTATCCACTGGTAGGAAGCGAGAGAAA
AAACTCACTTTTAGTGAGAAAAATTAGCTCCCGCCTCGAACCCGTGACTT
GCCTGCTAAACGGTGTACGGGGAACCAACTAGACTACCGGGGCAACTATA
CAATACGTAGTATCTAACACTACCAATCACGACTTTTCTCGAGGTGTTCA
TGTATTATGCTGCTGTTGGTGTGGCCGACCAATGCAGACTGTTTTGTGAG
AGGTACGAAGTAAACCCTCAAACGTTGTCTGAATTATTAACATTTTTTCG
GCAGGAGGGGCTAGGTCAGCTTGCCAGCAAATTTGGAACCAGCCCTGCGG
AGCTGCTGAAAGAGGAGGAGACCTGGGCAAGCGGCGTGCAGCAGGTACGG
AAGCATTCGTGAACCTCACACTTGCGTGATGCTGCAGGGTGGATACTCAA
AACACCCGCTCAGCGTTTCAACTCCCTCACTTTGCAACTTCGTTCCATCC
GGTGCAGACAGTCAAGCAGGTCGAGCGAGTGGCCACACCAAGCAGGCTGT
TCTACGCGGAGAACGCCGCCATCCTGCCGCTGTGGGCCGCGATGATAATT
TGGCCTGAAAAAGAACTGACCAAGAAAGTAATGGCGTCGTACGCGCCGGT
GGTCTTGGCGGCCGTTATTTACATGTGGCTCACGTACGAATGTTTCCAGA
ACCCTGCATCACTTGAAGGGTTTGCAAGCGGTATTACCAACCTGCCAGGT
TTGACGAAGGGATTCGGCGAAGAAGTTTCCGTGGCAACCGCATGGAGCCA
TTTCCTCGCGGAAGATTTGTTCATTGTGAGTTTCTGGTCGCGTACCAGTC
CGCGCTCTCACCACATTGTGTGCCATGCAGTCGCCCCACGACACAATGTC
CTGCTTTATGTTGAAGCCAGCTCTGCTTTTCTCTCCATGCGGTATTTATC
TCATAGTGGCGTTCATAACCTCGTTTGATTGCTCATGTCGACTCCTACCT
TGCGCCCTCGTCGCCGGAATGCGCTCTACTCCGGTTTCTGCAGGGTCGAT
TCGTGTACCTGGACGGAATGAAGAATAAAGTGTTTACGAAGCACAGCCTG
CTCTTGTGCTACCTATTCGGCCCCGTCGGTTTTCTGAGTCACTTGCTTAC
TCGCGGAGCTTTCGGCGTGGTGACACCCGTCCGGGATATCATGCAGGTAT
CGATCGTGCAGCGTTGCTACCACCTGTAGCCCTTCAGAATCGCAACGCTT
TGCTTTTGGCTCGCAACCGAGTTGGTGACGCACAACTTGTACTTGGGTGT
AACACTCAGGCGGGTGTCGAACAGCAGTCCACGACAGCGGCGCCGAAAGC
TCCTCCTGCGCCGAAAGCGGTAACCTTCGTGAGCCCACCCAGCAGCGAAG
CGAAGGACCTCGTGACCGAAGCCAAGCGAGAAGCAGACGAGATCCTCAAA
CAAGCGCGGTCAGCGGGTGCATCTTTGCTGGAGGTAGGCTGGTGTGCAAT
GCATGTTATTCCCATGCCTAGGGTGTCGTACAGGTGATTACTCTCTGGGT
CATCAAATGGTCATAAATTGTACTTCTACGAAGTATGCAATAGCAGTGAA
GTCAAGCTTGCGTTTTCCTCTGGGAATGTGAACTTTTTTCATGTCGCTGG
ATTTTTCCTTGTTTGCGTTTTGTTTTTCCCTCTCTTGGTTGCAGGAGGCC
GAGAGGGATTCTCTGTTAATTCTGAAGGGGGCAGAGGTGGAGAAGGAGGC
CCTATTGAGAGCAAGTAAAACTGGGCCGACACCAGACACAAAAACTGGGG
CAGCAGCGACCGAGCCAAAGGCAGAGCCAGCGAAGACCAAGCCGGCTGCA
ACATAATGGATCAAGGTCATTCATTTGGGCAACCTTGTAATGGCGCTGGG
TTAAATTCGACCTTTTCACCATGTGTGCGCGGGTTCAGTCCCTGGCAAAG
TATGAAAAGCACCTCGAGCAGGATTTTAGATATGGGGAGATTTAAGCAGC
TGGATTTACGTGCCGGGGCTCGCTTGGTTCTTCATGACGTTCTATGAGTG
TCTTTGATCTGCAAGGCTGAGGTCTAACATGTACTAGGCTCTAGACTACT
TACTGTACCTGTAAGATACGAGACGATGTTCGTCGGTTTGCCCGTTGCTT
CAACGTACTCGGTTGTTTCTTTTTGGAAAGGGCATATTTGGTCGTAAGTC
TCGCGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9786:605..5512+

>mRNA_L-elsbetiae_contig9786.18741.1 ID=mRNA_L-elsbetiae_contig9786.18741.1|Name=mRNA_L-elsbetiae_contig9786.18741.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2916bp|location=Sequence derived from alignment at L-elsbetiae_contig9786:605..5512+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAAGTCTACAAAGCAATGTGATGTGTGCCTTGTGGGGGGCTTCCTG
CCTCCAAGCTTGCATGGCTTTCTATTCATCTGCTCCACACCAGCTGGCTG
TCTTCCGTCGTCCAACTCATTTGAAGATGGTTGCGCACGTCGAGCCGGTC
TTCACCCTCTTGTTGGCTGACAATGCACCATCGCTGAGATGGGAAGTCTA
CAAAGCAATGTGATGTGTGCCTTGTGGGGGGCTTCCTGCCTCCAAGCTTG
CATGGCTTTCTATTCATCTGCTCCACACCAGCTGGCTGTCTTCCGTCGTC
CAACTCATTTGAAGATGGTTGCGCACGTCGAGCCGGTCTTCACCCTCTTG
TTGGCTGACAATGCACCATCGCTGAGCGATCTAGCACAACAAGCCCCGGA
TGTCTTGGGGGCTGCTTCGGACCTAGCGGATCTAGCGGGATCCACTCAGG
CTTCTGCCGCCGAATCGCTGAGCTCGATCGGTAATTTTTTTGGTTCCATC
TTGGACACAGTTTCGTCGGCCAAAGATCAGCGATCTAGCACAACAAGCCC
CGGATGTCTTGGGGGCTGCTTCGGACCTAGCGGATCTAGCGGGATCCACT
CAGGCTTCTGCCGCCGAATCGCTGAGCTCGATCGGTAATTTTTTTGGTTC
CATCTTGGACACAGTTTCGTCGGCCAAAGATCAGGCTGCCGACACCACTC
TGGGAACGGTCGACGCGTTTAAATCCCAGGCTGCCGACACCACTCTGGGA
ACGGTCGACGCGTTTAAATCCCAGGTGGGCGAGTTGACTGCGAACGCACT
CTCTCCCTTTCAACGGCTTGGGGGGGGGGTTTCCAGTGGTCTGACCGAGG
GGCTGGACAGCTTGAAAATCGGGGCGCAGGGTGCAGTCGAAGGAGCTCAG
ACACAGCTAGGCGAATCTATGACGGAAAAGATCGGGGGACCAATTCAGGT
GGGCGAGTTGACTGCGAACGCACTCTCTCCCTTTCAACGGCTTGGGGGGG
GGGTTTCCAGTGGTCTGACCGAGGGGCTGGACAGCTTGAAAATCGGGGCG
CAGGGTGCAGTCGAAGGAGCTCAGACACAGCTAGGCGAATCTATGACGGA
AAAGATCGGGGGACCAATTCAGGAGGGGCTAGGTCAGCTTGCCAGCAAAT
TTGGAACCAGCCCTGCGGAGCTGCTGAAAGAGGAGGAGACCTGGGCAAGC
GGCGTGCAGCAGGAGGGGCTAGGTCAGCTTGCCAGCAAATTTGGAACCAG
CCCTGCGGAGCTGCTGAAAGAGGAGGAGACCTGGGCAAGCGGCGTGCAGC
AGACAGTCAAGCAGGTCGAGCGAGTGGCCACACCAAGCAGGCTGTTCTAC
GCGGAGAACGCCGCCATCCTGCCGCTGTGGGCCGCGATGATAATTTGGCC
TGAAAAAGAACTGACCAAGAAAGTAATGGCGTCGTACGCGCCGGTGGTCT
TGGCGGCCGTTATTTACATGTGGCTCACGTACGAATGTTTCCAGAACCCT
GCATCACTTGAAGGGTTTGCAAGCGGTATTACCAACCTGCCAGGTTTGAC
GAAGGGATTCGGCGAAGAAGTTTCCGTGGCAACCGCATGGAGCCATTTCC
TCGCGGAAGATTTGTTCATTACAGTCAAGCAGGTCGAGCGAGTGGCCACA
CCAAGCAGGCTGTTCTACGCGGAGAACGCCGCCATCCTGCCGCTGTGGGC
CGCGATGATAATTTGGCCTGAAAAAGAACTGACCAAGAAAGTAATGGCGT
CGTACGCGCCGGTGGTCTTGGCGGCCGTTATTTACATGTGGCTCACGTAC
GAATGTTTCCAGAACCCTGCATCACTTGAAGGGTTTGCAAGCGGTATTAC
CAACCTGCCAGGTTTGACGAAGGGATTCGGCGAAGAAGTTTCCGTGGCAA
CCGCATGGAGCCATTTCCTCGCGGAAGATTTGTTCATTGGTCGATTCGTG
TACCTGGACGGAATGAAGAATAAAGTGTTTACGAAGCACAGCCTGCTCTT
GTGCTACCTATTCGGCCCCGTCGGTTTTCTGAGTCACTTGCTTACTCGCG
GAGCTTTCGGCGTGGTGACACCCGTCCGGGATATCATGCAGGGTCGATTC
GTGTACCTGGACGGAATGAAGAATAAAGTGTTTACGAAGCACAGCCTGCT
CTTGTGCTACCTATTCGGCCCCGTCGGTTTTCTGAGTCACTTGCTTACTC
GCGGAGCTTTCGGCGTGGTGACACCCGTCCGGGATATCATGCAGGCGGGT
GTCGAACAGCAGTCCACGACAGCGGCGCCGAAAGCTCCTCCTGCGCCGAA
AGCGGTAACCTTCGTGAGCCCACCCAGCAGCGAAGCGAAGGACCTCGTGA
CCGAAGCCAAGCGAGAAGCAGACGAGATCCTCAAACAAGCGCGGTCAGCG
GGTGCATCTTTGCTGGAGGCGGGTGTCGAACAGCAGTCCACGACAGCGGC
GCCGAAAGCTCCTCCTGCGCCGAAAGCGGTAACCTTCGTGAGCCCACCCA
GCAGCGAAGCGAAGGACCTCGTGACCGAAGCCAAGCGAGAAGCAGACGAG
ATCCTCAAACAAGCGCGGTCAGCGGGTGCATCTTTGCTGGAGGAGGCCGA
GAGGGATTCTCTGTTAATTCTGAAGGGGGCAGAGGTGGAGAAGGAGGCCC
TATTGAGAGCAAGTAAAACTGGGCCGACACCAGACACAAAAACTGGGGCA
GCAGCGACCGAGCCAAAGGCAGAGCCAGCGAAGACCAAGCCGGCTGCAAC
ATAAGAGGCCGAGAGGGATTCTCTGTTAATTCTGAAGGGGGCAGAGGTGG
AGAAGGAGGCCCTATTGAGAGCAAGTAAAACTGGGCCGACACCAGACACA
AAAACTGGGGCAGCAGCGACCGAGCCAAAGGCAGAGCCAGCGAAGACCAA
GCCGGCTGCAACATAA
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