prot_L-elsbetiae_contig9782.18740.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig9782.18740.1
Unique Nameprot_L-elsbetiae_contig9782.18740.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length150
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig9782.18740.1 vs. uniprot
Match: D8LF67_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF67_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 1.900e-36
Identity = 89/159 (55.97%), Postives = 101/159 (63.52%), Query Frame = 0 
Query:    1 MVLLNSEDEFFSELEHMFEFCKERGAGTVYITLKKVEGGSKQK-------AGAGRDKGAGGGGRREGWLARAKISNKKARKISVLVRRDV--GGARTASIQDRTTPPCKRCSKTSRNDETAVSSLHRIVLSGTDRGREEIDACMYDSGGHEEAGAKASG 150
            MVLL+S D FF ELE MF  CK+RGAGTVY TLKKVE G+KQ+        GAGR K AG GGRREGWLARAKISN+KARKISVL   D      R     D + P C     T R    +V      V  G+ RGR+E +ACMYDSG H+EA A+ASG
Sbjct:    1 MVLLDSADSFFVELEQMFALCKQRGAGTVYTTLKKVEAGNKQQLKKGNTETGAGR-KAAGPGGRREGWLARAKISNQKARKISVLASLDTPPDDGRPQQTYDVSCPLCFPVFFTRRQHRPSVRRRGSSVP-GSIRGRKEGNACMYDSGRHQEARAEASG 157
[Close]
BLAST of mRNA_L-elsbetiae_contig9782.18740.1 vs. uniprot
Match: A0A6H5L6K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6K8_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 4.930e-26
Identity = 65/101 (64.36%), Postives = 71/101 (70.30%), Query Frame = 0 
Query:    1 MVLLNSEDEFFSELEHMFEFCKERGAGTVYITLKKVEGGSKQK-------AGAGRDKGAGGGGRREGWLARAKISNKKARKISVLVRRDVGGARTASIQDR 94
            MVLL+S D FF ELE MF  CK+RGAGTVY TLKKVE G+KQ+        G GR K AG GGRREGWLARAKISN+KARKISVLV      A  A  +DR
Sbjct:    1 MVLLDSADSFFVELEQMFALCKQRGAGTVYTTLKKVEAGNKQQLKKASKETGGGR-KSAGPGGRREGWLARAKISNQKARKISVLV----SDAEVAQCRDR 96
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9782.18740.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LF67_ECTSI1.900e-3655.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6K8_9PHAE4.930e-2664.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003210Signal recognition particle, SRP14 subunitPFAMPF02290SRP14coord: 6..82
e-value: 2.2E-8
score: 34.4
IPR009018Signal recognition particle, SRP9/SRP14 subunitGENE3D3.30.720.10coord: 1..86
e-value: 5.3E-11
score: 44.2
IPR009018Signal recognition particle, SRP9/SRP14 subunitSUPERFAMILY54762Signal recognition particle alu RNA binding heterodimer, SRP9/14coord: 6..80
NoneNo IPR availablePRODOMPD009170coord: 1..41
e-value: 7.0E-4
score: 98.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9782contigL-elsbetiae_contig9782:1665..6473 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9782.18740.1mRNA_L-elsbetiae_contig9782.18740.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig9782 1665..6473 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig9782.18740.1 ID=prot_L-elsbetiae_contig9782.18740.1|Name=mRNA_L-elsbetiae_contig9782.18740.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=150bp
MVLLNSEDEFFSELEHMFEFCKERGAGTVYITLKKVEGGSKQKAGAGRDK
GAGGGGRREGWLARAKISNKKARKISVLVRRDVGGARTASIQDRTTPPCK
RCSKTSRNDETAVSSLHRIVLSGTDRGREEIDACMYDSGGHEEAGAKASG
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003210Signal_recog_particle_SRP14
IPR009018Signal_recog_particle_SRP9/14