mRNA_L-elsbetiae_contig9781.18739.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9781.18739.1
Unique NamemRNA_L-elsbetiae_contig9781.18739.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9781.18739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9781contigL-elsbetiae_contig9781:3778..5016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size306
Cds size303
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9781.18739.1prot_L-elsbetiae_contig9781.18739.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9781 3780..5016 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817039.9674854-CDS-L-elsbetiae_contig9781:3779..39511622817039.9674854-CDS-L-elsbetiae_contig9781:3779..3951Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9781 3780..3951 -
1691684001.9352384-CDS-L-elsbetiae_contig9781:3779..39511691684001.9352384-CDS-L-elsbetiae_contig9781:3779..3951Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9781 3780..3951 -
1622817039.9792352-CDS-L-elsbetiae_contig9781:4460..45651622817039.9792352-CDS-L-elsbetiae_contig9781:4460..4565Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9781 4461..4565 -
1691684001.9468215-CDS-L-elsbetiae_contig9781:4460..45651691684001.9468215-CDS-L-elsbetiae_contig9781:4460..4565Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9781 4461..4565 -
1622817039.9932806-CDS-L-elsbetiae_contig9781:4990..50161622817039.9932806-CDS-L-elsbetiae_contig9781:4990..5016Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9781 4991..5016 -
1691684001.9570372-CDS-L-elsbetiae_contig9781:4990..50161691684001.9570372-CDS-L-elsbetiae_contig9781:4990..5016Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9781 4991..5016 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9781.18739.1

>prot_L-elsbetiae_contig9781.18739.1 ID=prot_L-elsbetiae_contig9781.18739.1|Name=mRNA_L-elsbetiae_contig9781.18739.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
AERRGDRDRAPARDLLRDRGRERERDRDRDRPRPGLDVAAGDKRISLADR
PREYRRGDGPPSPPPRGGPPSSTGSFGRRDSGVGAGGGSGGKDYGREALD
S
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mRNA from alignment at L-elsbetiae_contig9781:3778..5016-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9781.18739.1 ID=mRNA_L-elsbetiae_contig9781.18739.1|Name=mRNA_L-elsbetiae_contig9781.18739.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1239bp|location=Sequence derived from alignment at L-elsbetiae_contig9781:3778..5016- (Laminarionema elsbetiae ELsaHSoW15)
GCAGAGCGCCGGGGAGATCGAGATAGGTGAGAGCGAGCGCTATTACTAGT
GGCAGGCCCCCTTGTTTCGTTTTTTCATTTTTCCTTTGTTGTTTGTTGTG
TTGCTTATTTGGTTTCCGCGCCATCGGTGTTGATTTGCCGCTGTGGAAAA
AGCTTCGGCTGGGGTTCGTGTGCTCGCCGCGCCCCGTCGCTTTGTAGATT
TTGTCTTGTTCTCTGCTATGCGTCGCATATCGCTCGACGGCCGCATGTGT
GTGTGTGTGTGTGTGTTGTTGTTGTTGTTGTTGTTTTTTCTTCACATTTA
AAACCGTTCCGATGTCTCCCCCCGTGTGTGTGTCTGTCTCCCCGAAACAT
GCCTCGCTTTTCGTATATTTACAGAAGTTTTTTTTCCCCTTTTTTTTTTT
AATCTTGACACACCTCCTGAATTTACCGATGATGGCATGTCTGCCAAACA
GAGCACCGGCGAGAGACCTGCTACGAGATAGGGGGCGAGAGCGGGAACGA
GATCGGGACCGGGACCGGCCACGGCCTGGTCTCGACGTGGCGGCCGGCGA
CAAACGGTACGCTCCTGGTTTCGATACTGCAGGATACGGAGTATTTATTT
GGCAAAGGTCCTGTCCTTTTTTTAATTAATGCATACAAGTGTCAAGCAGT
CTTACGTCCAGTCTGCGAAGAAGTCGTTCCAGAGGGACTGTTGTAGGCAT
GCCAAGCCCCTGTTTCCTCATCCAAGACATACTCGTCCTTTTTCTAATTA
ATGTATACAAATGTTTTTTTTAGAACGTTTTTCATTTTTGGCAAGCTGCA
TATAACTCCGAAGTCTATGGTGCGTACTTGCTACTTAGATAACTAAAACA
GGAGCTAATTTTACTGTGTAGCTGCTCAAGCTGTCTACTATACGCGTTCC
GCCCATGTTCGAGAGAGGGGAGTAGTTCGTCTCAGAGCCACAAGCGGCGC
AAGGAGTGACGATCTCGGCAGTCCACCACCCCCCCCCCCCCCCCCGTTAC
TGGCACCAACGTGCCCCCCGTCGTCCATACGCCCACCTGGCGGATCACGC
GCGCCGGTCTTGCAGAATTTCGCTGGCCGATCGACCCCGCGAGTACCGGA
GAGGGGATGGTCCCCCTTCACCCCCTCCTAGGGGAGGCCCGCCGTCCTCC
ACCGGGTCGTTCGGTCGACGAGACTCGGGTGTCGGCGCCGGAGGAGGAAG
CGGCGGCAAGGATTATGGTAGAGAGGCCTTGGACAGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9781:3778..5016-

>mRNA_L-elsbetiae_contig9781.18739.1 ID=mRNA_L-elsbetiae_contig9781.18739.1|Name=mRNA_L-elsbetiae_contig9781.18739.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig9781:3778..5016- (Laminarionema elsbetiae ELsaHSoW15)
GCAGAGCGCCGGGGAGATCGAGATAGGCAGAGCGCCGGGGAGATCGAGAT
AGAGCACCGGCGAGAGACCTGCTACGAGATAGGGGGCGAGAGCGGGAACG
AGATCGGGACCGGGACCGGCCACGGCCTGGTCTCGACGTGGCGGCCGGCG
ACAAACGAGCACCGGCGAGAGACCTGCTACGAGATAGGGGGCGAGAGCGG
GAACGAGATCGGGACCGGGACCGGCCACGGCCTGGTCTCGACGTGGCGGC
CGGCGACAAACGAATTTCGCTGGCCGATCGACCCCGCGAGTACCGGAGAG
GGGATGGTCCCCCTTCACCCCCTCCTAGGGGAGGCCCGCCGTCCTCCACC
GGGTCGTTCGGTCGACGAGACTCGGGTGTCGGCGCCGGAGGAGGAAGCGG
CGGCAAGGATTATGGTAGAGAGGCCTTGGACAGCAATTTCGCTGGCCGAT
CGACCCCGCGAGTACCGGAGAGGGGATGGTCCCCCTTCACCCCCTCCTAG
GGGAGGCCCGCCGTCCTCCACCGGGTCGTTCGGTCGACGAGACTCGGGTG
TCGGCGCCGGAGGAGGAAGCGGCGGCAAGGATTATGGTAGAGAGGCCTTG
GACAGC
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