mRNA_L-elsbetiae_contig978.18737.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig978.18737.1
Unique NamemRNA_L-elsbetiae_contig978.18737.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig978.18737.1 vs. uniprot
Match: D7FJB5_ECTSI (Monophenol Monooxygenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJB5_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 5.590e-29
Identity = 50/56 (89.29%), Postives = 51/56 (91.07%), Query Frame = 1
Query:    7 WGGFCHHGNCLFPMWHRAYVQHLENALRTQVPHVTMAYWDKGSKDSRNDGLPVSLT 174
            WGGFCHHGN LFPMWHRAYV HLENALRTQVP VTMAYWDKGSKDSRN G+P SLT
Sbjct:   80 WGGFCHHGNVLFPMWHRAYVHHLENALRTQVPDVTMAYWDKGSKDSRNYGMPASLT 135          
BLAST of mRNA_L-elsbetiae_contig978.18737.1 vs. uniprot
Match: UPI000348E845 (tyrosinase family protein n=1 Tax=Pseudanabaena sp. PCC 6802 TaxID=118173 RepID=UPI000348E845)

HSP 1 Score: 82.0 bits (201), Expect = 7.710e-17
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 1
Query:    7 WGGFCHHGNCLFPMWHRAYVQHLENALRTQVPHVTMAYWDKGSKDSRNDGLPVSLT 174
            WGG+C+HGN LFP WHR YV+ LE AL++ VP VTM YWD+ S +SR  G+P  LT
Sbjct:   77 WGGYCNHGNVLFPTWHRVYVRKLEEALQSIVPSVTMPYWDETSDESRQHGIPSILT 132          
BLAST of mRNA_L-elsbetiae_contig978.18737.1 vs. uniprot
Match: UPI0016871834 (tyrosinase family protein n=1 Tax=Nostoc TaxID=1177 RepID=UPI0016871834)

HSP 1 Score: 79.3 bits (194), Expect = 6.920e-16
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1
Query:    7 WGGFCHHGNCLFPMWHRAYVQHLENALRTQVPHVTMAYWDKGSKDSRNDGLPVSLT 174
            WGG+C+HGN LFP WHR YV  LE AL++ VP VTM YWD+ S+DS   G+P  LT
Sbjct:   78 WGGYCNHGNVLFPTWHRVYVLKLEEALQSIVPGVTMPYWDETSEDSLEYGIPSILT 133          
BLAST of mRNA_L-elsbetiae_contig978.18737.1 vs. uniprot
Match: A0A6M0SI45_9CYAN (Tyrosinase family protein n=2 Tax=unclassified Leptolyngbyaceae TaxID=1892297 RepID=A0A6M0SI45_9CYAN)

HSP 1 Score: 79.3 bits (194), Expect = 6.960e-16
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1
Query:    7 WGGFCHHGNCLFPMWHRAYVQHLENALRTQVPHVTMAYWDKGSKDSRNDGLPVSLT 174
            WGG+C+HGN LFP WHR YV  LE AL+  VP V MAYWD+ S +S  +G+P SLT
Sbjct:   76 WGGYCNHGNVLFPTWHRVYVYRLEQALQRIVPGVMMAYWDETSVESLAEGIPHSLT 131          
BLAST of mRNA_L-elsbetiae_contig978.18737.1 vs. uniprot
Match: A0A395N4C0_9HYPO (Tyrosinase n=1 Tax=Fusarium flagelliforme TaxID=2675880 RepID=A0A395N4C0_9HYPO)

HSP 1 Score: 79.0 bits (193), Expect = 9.440e-16
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 1
Query:    7 WGGFCHHGNCLFPMWHRAYVQHLENALRTQVPHVTMAYWDKGSKDSRNDGLP 162
            WGG+C+HGN LFP WHRAY+  LE AL+T VP V MAYWD+   +SR  G+P
Sbjct:   60 WGGYCNHGNVLFPTWHRAYLHRLEKALQTIVPGVAMAYWDETEVESREKGIP 111          
BLAST of mRNA_L-elsbetiae_contig978.18737.1 vs. uniprot
Match: A0A4Q7NUG4_9FLAO (Tyrosinase n=1 Tax=Aquimarina brevivitae TaxID=323412 RepID=A0A4Q7NUG4_9FLAO)

HSP 1 Score: 79.0 bits (193), Expect = 9.450e-16
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 1
Query:    1 DRWGGFCHHGNCLFPMWHRAYVQHLENALRTQVPHVTMAYWDKGSKDSRNDGLPVSLT 174
            D WGG+C+HGN LFP WHR YV  +E AL++ VP VTM YWD+ +K++   G+P  LT
Sbjct:   82 DYWGGYCNHGNVLFPTWHRVYVLRIEQALQSIVPDVTMPYWDETTKETIEKGIPWVLT 139          
BLAST of mRNA_L-elsbetiae_contig978.18737.1 vs. uniprot
Match: A0A1L7UDF1_FUSMA (Related to Tyrosinase n=1 Tax=Fusarium mangiferae TaxID=192010 RepID=A0A1L7UDF1_FUSMA)

HSP 1 Score: 78.2 bits (191), Expect = 1.180e-15
Identity = 31/52 (59.62%), Postives = 40/52 (76.92%), Query Frame = 1
Query:    7 WGGFCHHGNCLFPMWHRAYVQHLENALRTQVPHVTMAYWDKGSKDSRNDGLP 162
            WGG+C+HGN LFP WHRAY+ HLE AL++ VP V MAYWD+  ++S   G+P
Sbjct:   61 WGGYCNHGNVLFPTWHRAYLHHLEKALQSIVPGVAMAYWDETEEESLKYGIP 112          
BLAST of mRNA_L-elsbetiae_contig978.18737.1 vs. uniprot
Match: A0A7S2MLN1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MLN1_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.310e-15
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 1
Query:    7 WGGFCHHGNCLFPMWHRAYVQHLENALRTQVPHVTMAYWDKGSKDSRNDGLPVSLT 174
            WGG+C+HGN LFP WHR Y++ LE AL   VP V +AYWD+ S++S   G+P SLT
Sbjct:   87 WGGYCNHGNVLFPTWHRVYLKKLEEALDLAVPGVALAYWDETSEESLRYGIPHSLT 142          
BLAST of mRNA_L-elsbetiae_contig978.18737.1 vs. uniprot
Match: UPI000346D8AA (tyrosinase family protein n=1 Tax=Synechococcus sp. PCC 7336 TaxID=195250 RepID=UPI000346D8AA)

HSP 1 Score: 76.6 bits (187), Expect = 6.150e-15
Identity = 30/56 (53.57%), Postives = 41/56 (73.21%), Query Frame = 1
Query:    7 WGGFCHHGNCLFPMWHRAYVQHLENALRTQVPHVTMAYWDKGSKDSRNDGLPVSLT 174
            WGG+C+HGN LFP WHR YV  +E AL++ VP VTM +WD+ S+++   G+P  LT
Sbjct:   76 WGGYCNHGNVLFPTWHRVYVYKIEQALQSIVPDVTMPFWDETSEETLKHGIPTVLT 131          
BLAST of mRNA_L-elsbetiae_contig978.18737.1 vs. uniprot
Match: A0A7U4USB5_9BURK (Tyrosinase n=6 Tax=pseudomallei group TaxID=111527 RepID=A0A7U4USB5_9BURK)

HSP 1 Score: 76.6 bits (187), Expect = 6.160e-15
Identity = 31/56 (55.36%), Postives = 42/56 (75.00%), Query Frame = 1
Query:    7 WGGFCHHGNCLFPMWHRAYVQHLENALRTQVPHVTMAYWDKGSKDSRNDGLPVSLT 174
            WGG+C+HGN LFP WHR YV  LE AL++ VP V+M +WD+ ++DS  +G+P  LT
Sbjct:   79 WGGYCNHGNVLFPTWHRMYVYKLEEALQSIVPGVSMPFWDETNEDSLKNGIPSILT 134          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig978.18737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJB5_ECTSI5.590e-2989.29Monophenol Monooxygenase n=2 Tax=Ectocarpus TaxID=... [more]
UPI000348E8457.710e-1760.71tyrosinase family protein n=1 Tax=Pseudanabaena sp... [more]
UPI00168718346.920e-1660.71tyrosinase family protein n=1 Tax=Nostoc TaxID=117... [more]
A0A6M0SI45_9CYAN6.960e-1660.71Tyrosinase family protein n=2 Tax=unclassified Lep... [more]
A0A395N4C0_9HYPO9.440e-1661.54Tyrosinase n=1 Tax=Fusarium flagelliforme TaxID=26... [more]
A0A4Q7NUG4_9FLAO9.450e-1655.17Tyrosinase n=1 Tax=Aquimarina brevivitae TaxID=323... [more]
A0A1L7UDF1_FUSMA1.180e-1559.62Related to Tyrosinase n=1 Tax=Fusarium mangiferae ... [more]
A0A7S2MLN1_9STRA3.310e-1557.14Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
UPI000346D8AA6.150e-1553.57tyrosinase family protein n=1 Tax=Synechococcus sp... [more]
A0A7U4USB5_9BURK6.160e-1555.36Tyrosinase n=6 Tax=pseudomallei group TaxID=111527... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig978contigL-elsbetiae_contig978:29661..30325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.5
Seed ortholog evalue8e-24
Seed eggNOG ortholog2880.D7FJB5
KEGG rclassRC00046,RC00150,RC00180
KEGG koko:K00505
KEGG ReactionR00731,R02078,R02363,R02383,R04693,R04884
KEGG Pathwayko00350,ko00950,ko00965,ko01100,ko01110,ko04916,map00350,map00950,map00965,map01100,map01110,map04916
KEGG ModuleM00042
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Common central domain of tyrosinase
EggNOG OGs28UM2@1,2RXVS@2759
EC1.14.18.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817039.915125-CDS-L-elsbetiae_contig978:29660..297561622817039.915125-CDS-L-elsbetiae_contig978:29660..29756Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig978 29661..29756 +
1691684001.9039648-CDS-L-elsbetiae_contig978:29660..297561691684001.9039648-CDS-L-elsbetiae_contig978:29660..29756Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig978 29661..29756 +
1622817039.9343593-CDS-L-elsbetiae_contig978:30247..303251622817039.9343593-CDS-L-elsbetiae_contig978:30247..30325Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig978 30248..30325 +
1691684001.9175014-CDS-L-elsbetiae_contig978:30247..303251691684001.9175014-CDS-L-elsbetiae_contig978:30247..30325Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig978 30248..30325 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig978.18737.1prot_L-elsbetiae_contig978.18737.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig978 29661..30325 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig978.18737.1

>prot_L-elsbetiae_contig978.18737.1 ID=prot_L-elsbetiae_contig978.18737.1|Name=mRNA_L-elsbetiae_contig978.18737.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=58bp
DRWGGFCHHGNCLFPMWHRAYVQHLENALRTQVPHVTMAYWDKGSKDSRN
DGLPVSLT
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mRNA from alignment at L-elsbetiae_contig978:29661..30325+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig978.18737.1 ID=mRNA_L-elsbetiae_contig978.18737.1|Name=mRNA_L-elsbetiae_contig978.18737.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=665bp|location=Sequence derived from alignment at L-elsbetiae_contig978:29661..30325+ (Laminarionema elsbetiae ELsaHSoW15)
GATAGGTGGGGCGGGTTCTGTCATCATGGGAACTGCCTCTTCCCGATGTG GCACCGCGCCTACGTGCAGCATCTCGAAAACGCTCTCCGTACCCAGGTAT TAAGCTTGACAGGCATGCTTTTGGGCCTACGGCTGTCAGGGTGGCAGTAA TTCCTCACCGTTTGATCTTTCTGTACACAGAGGGAGAACCGATGGGGAAG CTTGGCCGGGCCCTTTGCGGGTGGACTACCTTCGTGAAGACATAAAGTTT ATCTAGGAAATAGAGACAGGGGTTCCGTGCCCCTGACCCTAACCCTAACC CCAAACCGACCCCCCGCTTAGCCGTTTCCATACTTTATCCCATGTGTTAG CCTAAGTTAAAACCCGCGTAAGCTACTGCTGCAGGTTGCCCTAAACGACC GGGCTCCGGCGGACGTATCGTACATACGTACCCTCTGGCTAGCGGGGTAG TTCGGCTGGCTGGTTGAGAGAGTTTTGCGGGATGCTCAAGGCCGCAACCG CTTTGGGATGTTGCGTGCGATGTCCTTGACTGGCACAAAGCACGACGGAC ACCTCACCCGTGCGAAACCTCTTTGCTTTTAGTACAGGTTCCGCACGTGA CCATGGCCTACTGGGATAAGGGTTCCAAGGACTCGCGAAACGATGGCCTC CCGGTGTCTCTCACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig978:29661..30325+

>mRNA_L-elsbetiae_contig978.18737.1 ID=mRNA_L-elsbetiae_contig978.18737.1|Name=mRNA_L-elsbetiae_contig978.18737.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=348bp|location=Sequence derived from alignment at L-elsbetiae_contig978:29661..30325+ (Laminarionema elsbetiae ELsaHSoW15)
GATAGGTGGGGCGGGTTCTGTCATCATGGGAACTGCCTCTTCCCGATGTG
GCACCGCGCCTACGTGCAGCATCTCGAAAACGCTCTCCGTACCCAGGATA
GGTGGGGCGGGTTCTGTCATCATGGGAACTGCCTCTTCCCGATGTGGCAC
CGCGCCTACGTGCAGCATCTCGAAAACGCTCTCCGTACCCAGGTTCCGCA
CGTGACCATGGCCTACTGGGATAAGGGTTCCAAGGACTCGCGAAACGATG
GCCTCCCGGTGTCTCTCACCGTTCCGCACGTGACCATGGCCTACTGGGAT
AAGGGTTCCAAGGACTCGCGAAACGATGGCCTCCCGGTGTCTCTCACC
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