mRNA_L-elsbetiae_contig9779.18734.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9779.18734.1
Unique NamemRNA_L-elsbetiae_contig9779.18734.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9779.18734.1 vs. uniprot
Match: D8LKD9_ECTSI (MABP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD9_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 1.840e-68
Identity = 119/167 (71.26%), Postives = 132/167 (79.04%), Query Frame = 1 
Query:    4 QVMCDSLDHVSEDRFPIALEFFSALVRTSEGRLGPLALQRTFRGLSFLCAYSCSSRRWVQAGGGHNGPLDDENPALAALKELLRLVCRQVEVAEETREALRRSRAAEAAXXXXXXXXXXXXSLTLLARTPGLMAIPTWDTYTPMLVKGGEGEAS-WVRTPDLGRSNG 501
            +VMCDSLDHV+EDRFPIALEFF ALVRTSEGRLGPLALQRTFRGLSFLCAY+CSSRRWVQA GG  GPL+D+NPA +ALK+LLRLVC QVE+AEE REA RRSR                    LLA TPG+MAIPTWDTYTPM+VKGG  EA+ W RTPD+ R+ G
Sbjct:  672 EVMCDSLDHVTEDRFPIALEFFEALVRTSEGRLGPLALQRTFRGLSFLCAYTCSSRRWVQASGGTKGPLEDDNPAFSALKDLLRLVCGQVEIAEEAREAFRRSRMTGTGPHGP-----------LLATTPGIMAIPTWDTYTPMVVKGGGREAAPWARTPDMDRAGG 827
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BLAST of mRNA_L-elsbetiae_contig9779.18734.1 vs. uniprot
Match: A0A6H5KWN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWN7_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 1.550e-43
Identity = 73/89 (82.02%), Postives = 80/89 (89.89%), Query Frame = 1 
Query:    4 QVMCDSLDHVSEDRFPIALEFFSALVRTSEGRLGPLALQRTFRGLSFLCAYSCSSRRWVQAGGGHNGPLDDENPALAALKELLRLVCRQ 270
            +V+CDSLDHV+EDRFPIALEFF ALVR SEGRLGPLALQRTFRGLSFLCAY+CSSRRWVQA GG  GPL+D+N A +ALK LLRLVC Q
Sbjct:   44 EVICDSLDHVAEDRFPIALEFFEALVRISEGRLGPLALQRTFRGLSFLCAYTCSSRRWVQASGGTKGPLEDDNRAFSALKYLLRLVCGQ 132
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9779.18734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKD9_ECTSI1.840e-6871.26MABP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KWN7_9PHAE1.550e-4382.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9779contigL-elsbetiae_contig9779:1345..7262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_001120.1
Exons3
Model size501
Cds size492
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9779.18734.1prot_L-elsbetiae_contig9779.18734.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9779 1354..7262 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817039.6466742-UTR-L-elsbetiae_contig9779:1344..13531622817039.6466742-UTR-L-elsbetiae_contig9779:1344..1353Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9779 1345..1353 +
1691684001.688234-UTR-L-elsbetiae_contig9779:1344..13531691684001.688234-UTR-L-elsbetiae_contig9779:1344..1353Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9779 1345..1353 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817039.65781-CDS-L-elsbetiae_contig9779:1353..14751622817039.65781-CDS-L-elsbetiae_contig9779:1353..1475Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9779 1354..1475 +
1691684001.709055-CDS-L-elsbetiae_contig9779:1353..14751691684001.709055-CDS-L-elsbetiae_contig9779:1353..1475Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9779 1354..1475 +
1622817039.6740377-CDS-L-elsbetiae_contig9779:4677..48161622817039.6740377-CDS-L-elsbetiae_contig9779:4677..4816Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9779 4678..4816 +
1691684001.7185433-CDS-L-elsbetiae_contig9779:4677..48161691684001.7185433-CDS-L-elsbetiae_contig9779:4677..4816Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9779 4678..4816 +
1622817039.6840363-CDS-L-elsbetiae_contig9779:7031..72621622817039.6840363-CDS-L-elsbetiae_contig9779:7031..7262Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9779 7032..7262 +
1691684001.7296188-CDS-L-elsbetiae_contig9779:7031..72621691684001.7296188-CDS-L-elsbetiae_contig9779:7031..7262Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9779 7032..7262 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9779.18734.1

>prot_L-elsbetiae_contig9779.18734.1 ID=prot_L-elsbetiae_contig9779.18734.1|Name=mRNA_L-elsbetiae_contig9779.18734.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=164bp
MCDSLDHVSEDRFPIALEFFSALVRTSEGRLGPLALQRTFRGLSFLCAYS
CSSRRWVQAGGGHNGPLDDENPALAALKELLRLVCRQVEVAEETREALRR
SRAAEAARDDGGGGGGGGGSLTLLARTPGLMAIPTWDTYTPMLVKGGEGE
ASWVRTPDLGRSNG
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mRNA from alignment at L-elsbetiae_contig9779:1345..7262+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9779.18734.1 ID=mRNA_L-elsbetiae_contig9779.18734.1|Name=mRNA_L-elsbetiae_contig9779.18734.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5918bp|location=Sequence derived from alignment at L-elsbetiae_contig9779:1345..7262+ (Laminarionema elsbetiae ELsaHSoW15)
TTCCAGGTGATGTGCGATTCCCTGGATCACGTGTCGGAGGACCGGTTCCC
GATCGCGCTGGAGTTCTTCTCGGCCCTGGTCAGGACCAGCGAGGGCAGGC
TAGGCCCGCTCGCACTCCAGAGAACGTTTCGGTGAGAGGGATTAAATAGA
AATCAGTGAATCAAAAATGGAACCTAGCCCACATGAGAACCAAGACTCGG
TGGGTTTCAAACGGTATTCCATTAAGTGATGTAATATTGATCGGGTTATG
GTTCATCATGGTAAGGGTTACGTTTCGATGAGAGGGATTGTCGGGTCATG
ATTCATGATGGTAAGGGTTAAGGGTTACGTTTCGGTGAGGGGGATTATCG
GGTCATGATTCATGATGGTAAGGGTTAAGGGTTACGTTTCGGTGAGGGGG
GTTATCGGGTTATGATTCATCATGGTAGGGTTACGTTTCGGTGAGGGGGA
TTATCGGGTTATGATTCATCATGGTAGGGGGTTACGTTTCGGTTAGGGGG
ATTATCGGGTTATGATTCATCAGGGTTAAGGGATTCGGGCTACCGGCTCC
AGCAGCTGCTGCTGCTGCTGTGCTTAGTGGATCGTCATATTATAGGGTCA
CCCTCACCCTCCATACATGCAATAATTAATATAAATATCGAGGGCAAATT
CATGTTTCAGTTCAACTATTTTTTTGTTTTTGGGTTAGATTTGTCCTGTC
GCCTGACCACGGGAATCGACCGCATCAGTGTTGGAGTAGTATGGACTCGT
GGAGGTACTGGAAAGAGAGATCGGAACGGTTTTTAATGTCAAGACAACAG
CAAGCTGGGCTCTCTTACACCCAGGTCCGCCGAGGTTTATGTTTTAACCC
TTTTAGTACGGGCGGTCCCTGACAACCAAAGTTATCGGACCAAAATTATC
GAACTGTTTTAGATGCCCGCTGATTGGTCGAGAAGGACAGTCCCTGCGCA
AGACACCTGCAAAGACCAGCTGCAGGGCCCCACAACAGTTTGGCGACACT
TCCTATACTAAATAGCAGTAAAACTCTGTTGAACGTTTGGCAGTTTGGCA
ACACTTTCGATACTCAATCCAAGTCGAACTTTTTTGGCGTACCAGACAAT
ACAGATTTATTTGTCTAAGAGACATGAGATGAACACTGGGCTGTGCACGC
GCAGCAGCCCTCACAACGCATCATGCAGCGTGGCGAGCGAAGCAAACCGC
TCTAGGCTCAGCATGCGGTGGTTCTCGAGAGTTACAGCGAAGCTGTGTGT
GCGTGCTGTCAGCTCGAAGGCTCAAATCGCTAGGGGCGCCGCGGAAAGTA
CAGAATTTGGAATCGCAGACACGTTGATTTTTTCGTGAGTTTGAGATATC
GACAACTCCGTTGTGTCCACAGCACTGCTGTGGAGCTGTGAGGAGGCCAG
ATACGGTAGATAAAGTGTCTCACAACTCGGCAGGGTACTTACTCCCAGGC
CTTTGTACGGGATACCAAGACCGCCCGTGCACCCCAAAGTCATAAAACTG
TGACCAAAGTTAGGTGTCGCCAAATCGTCGCCAAACGCGCTTCCAGTGCT
ATAAGGGTTAAGGGGTTGGCTGCTGTCGAGGGGAAGCGGGGGCGCTCTTG
CGTACACCCCCAGGGAACGTTCAGATAAAGGATAGGGGCAGGGTTTGTGC
TAGGGTTGGGAATGTCAAGGGCAGGGCAGGATTAGCCCTCTCTGCACGCG
GAGCGTCCGGTTCATGTTTCCGATCTCAGAATCCCTGAAAGGGTTGCTCG
CGAGGTGGGAGAAGTGATAGTGCCACGAGGAGAGAGAGTCCCCGTGACAT
TCAGATGACATACTACCACCCCAACTGTGTACCCCTCCCATAGATTGTCC
CCAAACCAGTATCTTTACCAAGTACCACAAACAGATCATGGGGGATCAAA
TCGGAAGGCGCTCGTATTTTCAGCACCCGAAGGGTCAAGGGATCATATAC
GGTTTTCGGTGTGGGAAGCCTTCGGCTCTCTGTAGTTCTCTTTCCTTACC
TGGTGTGGCATTTGGTTTTTGCTTTTTCGAACTTTTTTTTTTTTTATCTT
CCGAGTATGTAGCATGTACTCTACCTTTGATTTTGTGTCGGCGAGACGCA
AGACCCCTCGGGGGCCCAGTTTAGTACCGCCGGGCGCGGATGTGCCATAT
TTTTTTGTTTTATTTTTCTTCGGCGGCGTCGAGTGTGCCCCCCTTAAGTG
TTTTGCGACCACGGGCGGGGGCCCCCAAGGATGTTTTAATAGAGAGATAT
ATAATATGAGAAACAACACCAGACAACGGTGACTTGAAAATAGTACCAGC
TGCGTGTCGCACGTACACAGACAGCCCCGAGGACACCCCCCGATGTTTTG
TTGTTAAACCCGTCCCCGGTTCCCCCCTTGACCGAGAGGCCGCGCTTGAT
CCCCGTCAAGTTATAAAAAATACAAGATCACCCTTCGGAGCGAGCTCATG
AAAGCACAGGAGACGGGGGTGATGCAAGACGAAAGAAAAAATAATAACCC
AGATCTTTGAACCAAAGATTCTGAACTCGAACGCCTATTTTCCCGCAAAA
AGCAGGTCCTTCATTAATCGCCACACGTTATAGATGAGACGAAACAGCTG
CCCTCCTAAGCACAGCAACAGCACTAACCGTGTGCTTCTGTGTGGGCGCT
CCGCCCTTGATCAACACGCTCCGCCTTTGTCAACACAGCTGTGCAGGTCA
ACACAGCTGCGCAGGTCTGTGCCCCTCAGCCGTGTGTTATGTGTACCGAA
AAAAAAAAGCTGCTGCTACTGACGTGTTTTTCTTCAACTGAAAGAGACAG
CTGCTCTCATCCTGACGTTCGTTTGGGCCATTGGAGGCCGGCAGCCTACT
GATGACATATCGGAACAGAAGTTTTCCCGGTCCAATGTATCGTGTATTTA
AAAACCCTCACAAAAGGTATACGACTGGAGTAAGGGTAAAAAAAAAAAAA
AACATGTGCAAATTGTAAATTTTACATATGGATGAGGGGTGCTGTTTTTC
GTATGGGCTTTAAGTATTAAATATCTATCGCACGCCGTGACCCGCGCGTG
TTTGACAATTATTCTTTTTTTTTCTGTTTGGTTTGCGTCCGCCCTTTTTT
TGTTTTTATTTTAAGTATACTCATTATATGCTTCTATTGAAAGATAACAC
CAGACAGTCAAAAGACGGGAACCCACATTTTGAGACCGGGCTCCGTGGGG
TTCAACCGGTATTTATTTTATGTATGTACTCCATGTAAAGAGTGACGTAA
TATTGGTCCGGCCGAATTTCTTTTTTTCTTTGTGTGTCTGCGTGCTTGTG
TGCTTGCTTTTTGTTCTTTTTTTTTCTCGGCAGGGGGCTGTCGTTCCTGT
GCGCCTACTCGTGCTCCTCTCGCCGCTGGGTGCAGGCCGGAGGCGGCCAC
AACGGCCCGCTGGACGACGAGAACCCGGCGCTCGCGGCCCTCAAAGAACT
CCTGAGGCTCGTCTGCAGACAGGTGCGTGGCGGGTGGCGGGGTGTGTGGG
GGGACCGACCGCCTTCCGTGAAGAATTCATTCCTGTAATTCTTGTCTGTA
TACTTCGGTGGTCTAGTGGTTTAACTTCGAACCCACTAGCAGCAAATTCT
GGAGTTCAATCTCAAGCAGATGTGTTTCTTTGCGACTTTGCAGGTGAAAG
CGATTAAAGCTGAAAAGCTCGTGAGTACCAAACTTCGACGTAATCACGTT
GACGAGGAAAAGGGATAGCTGAACCCTTCTCGCAATAAAAATGAAGGCAA
GCAACGCAGGAGGAATATGGGGCAAAAAAAGAAAATAAAAAAGAGGAAAA
AGCCCCAGTGTTCACCTCCTCCTGTGTGACCCCGGTTGGTTCTAGTTGTA
CAGACAAATGCACTGCAAAGTGTAGTACCTCTTCACTACACCGTAAGGTG
TAGTACACGTCTCCACTGGGAGGGACTGTCGCCAAAATAAATGGGAAGGA
CACACACACACACATACTTCGGCTGCGTGCGGCACCGCCCTCGACAGACA
TGGTTCACCAGATAGAGAATGGTGCTCAACCCGCCCAAGTATTGTAGGAA
ATAATGGACGGGGTTCCGTAATCCTATAAAACCCTAACCCCAAACCGACC
CCCCCATTAGCCATTTCCATGTAGTTTTATCCTGTTTATATGATTTATTC
CAGTGGCATTCTGCGAAGGCTACTGGGGCGGGGAGGTAGCTCGTGGTGAT
AGCCTATGTGTGTCCTTCCCATTTATTTTGGCGACAGTCCCCCCAAGTGG
AGACATGTACTACACCTTGCGGTGTACTGAAGAGGTACTACACTTTGCAG
TGCATTTGTCTGTACAACTAGAACCAACCGGGGTCACACAGGAGGAGGTG
AACACTGGGGCTTTTTCTTCTTTTTTATTTTCTTAGAGTAATAAATACTT
GAGAGTAGGTGGACGAATCATGTTCAGCTGCCCCCGGGTTTGGGACATTC
ATCACCCCGCCACAACCAGGCATAGCCCCCCCCCCCTCAAATTACCCTCT
GTGTCCCCCCCACTCCCCCCTCCCTCCCCGTTAATGATTTTCTTTGTGGT
GGCACAACTCCTGTCTTTTTTGTTGTGGTTGTGTTTTTCGCCCCACCTCT
TCTGGCGGCTGGCGGATTTCGGCGTAATTTACTCAAGTCAGCGACATGCT
CACCGTTTCACATTTCGGTGTAAGCCGCTAATTTATGCACCTCTTTTGCT
GTGTATACATGGTGGCGTGTTGGCGTGTGTTCTCTGTGCAACTACAATAG
AGGTACAGTAGGCGCCACCACTTAAGAACCTCTTATTTTGCCCGAGGCTC
GGTTCTTATTTTCCCGTGAGGCAGCCAATTTATCTTTATATAGGTTTTAG
AGTGCGGGTTGAGAGCGAGCACGTGTTCTTATGGGCATGTTCTTATATTT
TGGATATTTTGAGACTGAAGTTTTTAAGTGCTAGGTTCTTAAGTGGTGGC
GCCTACTGTATATACTATCCGGGACCACGCGTCTCTTACATACCGCCTAT
TTCGACTGGGGAAACCCTCCACAAAAAAAAAAAAAAAAACTGTGTATGTC
ACGGGTGTGGACAGGGATGTTGATGCCAAGGGGGCTGGCGCCCGACAACA
CCAGGGAATTGCCAATTGATGCATATGACGCTACAGTACATACATACTAG
TGTGTTTTTTTGTTTTTTTAATTGTCTGTCCGTGTGCGCGCGGACACAAC
TCTTTTCATTTGTTCGTCCGTGCGAGCGGACACATATGTAACGGTGCTGC
CTGAAATTATGTTTTCACCAACGAAACTACTGTATGGTGGATTTTACGGA
TTTTGTTCGAGTAAGTATATCTTGGGCGTAGCTTCGACCTCGCCGTCGAC
GAGGGAAAGGGACGACTGAACCCTTCTCGCGACAAAAACCTAAGGCACGC
ACCGCAGACGGGGGGAGTGGGGGCCTTGGGGAAAGGAACCCTTCTGTGTG
ACCACGGTTTCAGTACTCTGGCAAGATGTCCTCGTGACAGGGAGCCAGCC
CATTGAGCACTGGAAATAAATGTGAAGAAGAAAAAAAAAAAATTGGACGG
AAAAAAGACGGGGTTAGTATTGCCTACATCAGCAGTCCCTCGGGAACGAC
TGTTTTCGCAAACTGGATGTAGACTGCTGGCATTTGTATGGATTTATGTA
CGTCAATTACAAACAAAAACAAAATCGCTGTTGTCAGGTGGAGGTCGCCG
AGGAGACCAGAGAGGCGCTGCGGCGATCTAGGGCGGCGGAGGCGGCTCGC
GATGATGGCGGCGGCGGTGGCGGCGGCGGCGGCTCCCTGACGCTCCTGGC
GCGCACGCCGGGGCTCATGGCCATCCCCACGTGGGACACGTACACGCCGA
TGCTGGTCAAGGGCGGGGAGGGGGAGGCCTCGTGGGTGCGCACCCCGGAC
CTCGGCCGCTCTAACGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9779:1345..7262+

>mRNA_L-elsbetiae_contig9779.18734.1 ID=mRNA_L-elsbetiae_contig9779.18734.1|Name=mRNA_L-elsbetiae_contig9779.18734.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=984bp|location=Sequence derived from alignment at L-elsbetiae_contig9779:1345..7262+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCGATTCCCTGGATCACGTGTCGGAGGACCGGTTCCCGATCGCGCT
GGAGTTCTTCTCGGCCCTGGTCAGGACCAGCGAGGGCAGGCTAGGCCCGC
TCGCACTCCAGAGAACGTTTCGATGTGCGATTCCCTGGATCACGTGTCGG
AGGACCGGTTCCCGATCGCGCTGGAGTTCTTCTCGGCCCTGGTCAGGACC
AGCGAGGGCAGGCTAGGCCCGCTCGCACTCCAGAGAACGTTTCGGGGGCT
GTCGTTCCTGTGCGCCTACTCGTGCTCCTCTCGCCGCTGGGTGCAGGCCG
GAGGCGGCCACAACGGCCCGCTGGACGACGAGAACCCGGCGCTCGCGGCC
CTCAAAGAACTCCTGAGGCTCGTCTGCAGACAGGGGGCTGTCGTTCCTGT
GCGCCTACTCGTGCTCCTCTCGCCGCTGGGTGCAGGCCGGAGGCGGCCAC
AACGGCCCGCTGGACGACGAGAACCCGGCGCTCGCGGCCCTCAAAGAACT
CCTGAGGCTCGTCTGCAGACAGGTGGAGGTCGCCGAGGAGACCAGAGAGG
CGCTGCGGCGATCTAGGGCGGCGGAGGCGGCTCGCGATGATGGCGGCGGC
GGTGGCGGCGGCGGCGGCTCCCTGACGCTCCTGGCGCGCACGCCGGGGCT
CATGGCCATCCCCACGTGGGACACGTACACGCCGATGCTGGTCAAGGGCG
GGGAGGGGGAGGCCTCGTGGGTGCGCACCCCGGACCTCGGCCGCTCTAAC
GGTGTGGAGGTCGCCGAGGAGACCAGAGAGGCGCTGCGGCGATCTAGGGC
GGCGGAGGCGGCTCGCGATGATGGCGGCGGCGGTGGCGGCGGCGGCGGCT
CCCTGACGCTCCTGGCGCGCACGCCGGGGCTCATGGCCATCCCCACGTGG
GACACGTACACGCCGATGCTGGTCAAGGGCGGGGAGGGGGAGGCCTCGTG
GGTGCGCACCCCGGACCTCGGCCGCTCTAACGGT
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