prot_L-elsbetiae_contig9776.18733.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig9776.18733.1
Unique Nameprot_L-elsbetiae_contig9776.18733.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length669
Homology
BLAST of mRNA_L-elsbetiae_contig9776.18733.1 vs. uniprot
Match: A0A6H5KJX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJX7_9PHAE)

HSP 1 Score: 246 bits (629), Expect = 8.060e-68
Identity = 176/398 (44.22%), Postives = 216/398 (54.27%), Query Frame = 0
Query:  249 TMAFFTVILTVFMALLSLRLFGFQS--VTAGWIGSPCLLALAILGLHSLALLDGSGGFCGAPVVRVGGSRLAVGLDRRPVILLTFISAVLVVLKLDGTAAATAGTTATAGTWAAAAALVGGVHWGYVFVPVWVMLFSLEVIYVVALLENHAGRSLTCSPLSGGGARRDCRGXXXXXXXXXXXXXXLXXXXXXXXXXXXCDGPRWXXCRT--SREKGGYGRLEDVRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADGTTACPSGGGCGSRRRVELNPSQRAAASCIAAGLLLLTVTVITASVGSDREHASWGIPVTFLTAAAGMALVGAGFVSLASAYDRLLRGPLPPAVKPRPVLFSERDGGWVLGSPDPPVVSVFLLGDVALRPE 642
            TMA F V L+VFM LLSLRL G  +  + A WI SP LLAL +L LHSL +LDGSGG+ GAPV++VGG+RL V L RRP+ILLT ++AVLVVLK+D  A  +                +  VHWGY  +P+WV++  LE +YV AL EN+  RSLT   L GG   RD RG                           C    W   RT  S EK G    ED              XXXXXXX                     A  ++          R+RVEL PSQRAAA  I+ G +LLT  +++   GS  E A+WG+P+T + A  G  +VGAG   LA A+DR +RGPLPP  KP PV FS++ GGW+ G PDPPVVS+FLLGDV LR E
Sbjct:  416 TMAAFGVTLSVFMILLSLRLLGVSAHYLPAFWIASPGLLALTLLALHSLVILDGSGGYGGAPVLQVGGNRLVVVLGRRPIILLTLLAAVLVVLKIDSFAGGSG----------VVMEAMEMVHWGYALLPLWVIVCMLEAVYVGALWENYTRRSLTFPGLFGG--VRDLRGLGGLGYWFCCCLGGRGGYAGDGGKGGGC---HWQWRRTWWSGEKNGDDDFEDPLVKDYDEYEGKQQXXXXXXXGTSGKFGGAGRESPPTDAQAYASYSSPV--------RQRVELTPSQRAAAITISVGTILLTACLVSLISGSTDEKANWGVPLTMIAATTGFGMVGAGVRKLALAHDRRMRGPLPPFTKPLPVFFSDQHGGWIAGPPDPPVVSIFLLGDVRLRQE 790          
BLAST of mRNA_L-elsbetiae_contig9776.18733.1 vs. uniprot
Match: D7FZT0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZT0_ECTSI)

HSP 1 Score: 211 bits (538), Expect = 2.930e-55
Identity = 270/696 (38.79%), Postives = 332/696 (47.70%), Query Frame = 0
Query:    1 MGVLWCTVPVWLACLWLAAELVRSLLRVRRVLLDEERRCALSVRSTRRRLRRKRSREGPQGRRHRERGMEDGGRGGVDDAGTSGPLSVLRRSAALTRAPSSRLRRH--RSXXXXXXXXXXXXXXXGGKGEQGGEA--IEDW------------------------WGRDESADGGGDXXXSGLGSGRQIGTAAPGTPESQQGP----PTLVA---VSNXXXXXXXXXXXXXXXXXXRTALLPAPAELK--------SSSXXXXXXXXXXXDPRRPEVQISFLFQEWLRLWATMAFFTVILTVFMALLSLRLFGFQS--VTAGWIGSPCLLALAILGLHSLALLDGSGGFCGAPVVRVGGSRLAVGLDRRPVILLTFISAVLVVLKLDGTAAATAGTTATAGTWAAAAALVGGVHWGYVFVPVWVMLFSLEVIYVVALLENHAGRSLTCSPLSGGGARRDCRGXXXXXXXXXXXXXXLXXXXXXXXXXXXCDGPRWXXCRT--SREKGGYGRLED--VRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADGTTACPSGGGCGSRRRVELNPSQRAAASCIAAGLLLLTVTVITASVGSDREHASWGIPVTFLTAAAGMALVGAGFVSLASAYDRLLRGPLPPAVKPRPVLFSERDGGWVLGSPDPPVVSVFLLGDVALRPEDRGVR 647
            + V+WC +P  LA +W   EL+RSLLRVRRV+L EE +  LSVR  RR+LRR       Q          D               + +RR +AL R PSSR RRH  R                G   ++  EA   E W                        +  D+            LG    +GTA+P    S++      P   A    S     XXXXXXXXXXXXXX     P    LK        +SS             +R  V++S L Q WLRLW TMA F V L+VFM LLSLRL G  S  +TA WI SP LLAL +L LHSL +LDGSGG+ GAPV+RVGG+RL V L RRPVILLT ++AVLVVLK+D  A  +           A    +  VHWGYVF+P+WV++  LE +Y+ AL EN+  RSLT   L GG   RD RG                           C    W   RT  S EK G G  ED  V  XXXXXXXXXXXXXXXXXXXXXXX                A+   +C S      RRRVEL PSQRAAA  I+AG +LLT  +++  VGS+ E A WG+P+T +TA  G  +V     +L S     L G    +    P    E     +     PP +++F +G       DRG+R
Sbjct:  106 LSVMWCMIPAVLASVWFVFELIRSLLRVRRVMLREEAQRMLSVRRMRRQLRRXXXXASLQXXXXXXXXXXDMDVXXXXXXXXXXXSARVRRWSALVRPPSSRTRRHLSRGETPPGGAAPAADVCLGAGRDEVEEADEFEGWXXXXXXXXXXXXXXXXXXXXXXXXFDEDDVLRLSPTQRTLALGL-PPVGTASPDAYTSEERKRYHEPRAAAGATPSKTSSYXXXXXXXXXXXXXXXXXXXPPTPGLKWPKAPPATTSSGGGEGEGDSHRSAQRA-VRVSVLLQAWLRLWLTMAAFGVTLSVFMILLSLRLLGVSSHHLTAFWIASPGLLALTLLALHSLVILDGSGGYGGAPVLRVGGNRLVVVLGRRPVILLTLLAAVLVVLKIDSVAGGSG----------AVMEAIEKVHWGYVFLPLWVIVCMLETVYLGALWENYTRRSLTFPGLFGG--VRDLRGLGGVGYWFCCCLGGRRGYAGDGGENGGC---HWQWRRTWWSGEKYGDGDSEDPLVSDXXXXXXXXXXXXXXXXXXXXXXXTSGKFGGFGRESPPTDAEAYVSCSSP----VRRRVELTPSQRAAAITISAGAILLTACLVSLIVGSNDEQADWGVPLTMVTATTGFGMVLLELQALPSPKLEKLDG----SELEDPTFSKEEKEVGI-----PPTLNMFPVGYPTELRGDRGLR 771          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9776.18733.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJX7_9PHAE8.060e-6844.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZT0_ECTSI2.930e-5538.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 394..535
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 594..668
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 298..316
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 340..345
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 559..569
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 243..264
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 265..275
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..242
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..24
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 346..366
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 570..593
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 317..339
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 367..371
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 372..393
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 536..558
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 276..297
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableTMHMMTMhelixcoord: 568..590
NoneNo IPR availableTMHMMTMhelixcoord: 370..392
NoneNo IPR availableTMHMMTMhelixcoord: 536..558
NoneNo IPR availableTMHMMTMhelixcoord: 276..298
NoneNo IPR availableTMHMMTMhelixcoord: 247..269

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9776contigL-elsbetiae_contig9776:3924..6773 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9776.18733.1mRNA_L-elsbetiae_contig9776.18733.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig9776 3908..6797 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig9776.18733.1 ID=prot_L-elsbetiae_contig9776.18733.1|Name=mRNA_L-elsbetiae_contig9776.18733.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=669bp
MGVLWCTVPVWLACLWLAAELVRSLLRVRRVLLDEERRCALSVRSTRRRL
RRKRSREGPQGRRHRERGMEDGGRGGVDDAGTSGPLSVLRRSAALTRAPS
SRLRRHRSRDAAASAVTPSPSPSGGKGEQGGEAIEDWWGRDESADGGGDG
GSSGLGSGRQIGTAAPGTPESQQGPPTLVAVSNDGGGYDDDGGDDGGDDD
ARTALLPAPAELKSSSLKSPPLPPPPPDPRRPEVQISFLFQEWLRLWATM
AFFTVILTVFMALLSLRLFGFQSVTAGWIGSPCLLALAILGLHSLALLDG
SGGFCGAPVVRVGGSRLAVGLDRRPVILLTFISAVLVVLKLDGTAAATAG
TTATAGTWAAAAALVGGVHWGYVFVPVWVMLFSLEVIYVVALLENHAGRS
LTCSPLSGGGARRDCRGGGGDGGGDGFGHGALCCCLDSGGGTGSCDGPRW
WWCRTSREKGGYGRLEDVRGGGQQQQQQQQQQQQQQSATGGAGTTGELRR
REQHQQHAPADGTTACPSGGGCGSRRRVELNPSQRAAASCIAAGLLLLTV
TVITASVGSDREHASWGIPVTFLTAAAGMALVGAGFVSLASAYDRLLRGP
LPPAVKPRPVLFSERDGGWVLGSPDPPVVSVFLLGDVALRPEDRGVRWGG
GSSGVGEAGWNVCCGSTC*
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