mRNA_L-elsbetiae_contig9771.18729.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9771.18729.1
Unique NamemRNA_L-elsbetiae_contig9771.18729.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9771.18729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9771contigL-elsbetiae_contig9771:5634..6253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size620
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9771.18729.1prot_L-elsbetiae_contig9771.18729.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9771 5770..6084 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817039.3766656-UTR-L-elsbetiae_contig9771:5633..57691622817039.3766656-UTR-L-elsbetiae_contig9771:5633..5769Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9771 5634..5769 +
1691684001.4960275-UTR-L-elsbetiae_contig9771:5633..57691691684001.4960275-UTR-L-elsbetiae_contig9771:5633..5769Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9771 5634..5769 +
1622817039.3976965-UTR-L-elsbetiae_contig9771:6084..62531622817039.3976965-UTR-L-elsbetiae_contig9771:6084..6253Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9771 6085..6253 +
1691684001.5201333-UTR-L-elsbetiae_contig9771:6084..62531691684001.5201333-UTR-L-elsbetiae_contig9771:6084..6253Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9771 6085..6253 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817039.3870177-CDS-L-elsbetiae_contig9771:5769..60841622817039.3870177-CDS-L-elsbetiae_contig9771:5769..6084Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9771 5770..6084 +
1691684001.5092406-CDS-L-elsbetiae_contig9771:5769..60841691684001.5092406-CDS-L-elsbetiae_contig9771:5769..6084Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9771 5770..6084 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9771.18729.1

>prot_L-elsbetiae_contig9771.18729.1 ID=prot_L-elsbetiae_contig9771.18729.1|Name=mRNA_L-elsbetiae_contig9771.18729.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
MTNDIKTLARKRGERVPVIFSSPHQRDTYVRYLGCIYICTSNWDFAQEGS
GTMLNKAQVTPPTHTHTQSVRRTRKYRRSHFHAGGQSSGNNFNTSSYESS
AALA*
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mRNA from alignment at L-elsbetiae_contig9771:5634..6253+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9771.18729.1 ID=mRNA_L-elsbetiae_contig9771.18729.1|Name=mRNA_L-elsbetiae_contig9771.18729.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=620bp|location=Sequence derived from alignment at L-elsbetiae_contig9771:5634..6253+ (Laminarionema elsbetiae ELsaHSoW15)
CACCGCTGCTGCTGACCACTTCAAGGATGAACTTGCGGCAGAGCCAAAAA
GCCTCTCTGCTCACCACAAACGAAACCACGTCCTATTTTCTTGAACCCCT
CTCAGAAGTTGCTCTATTTCCTACATTTATGAAACGATGACAAATGACAT
AAAAACGCTTGCCAGGAAAAGGGGAGAGCGCGTGCCTGTTATTTTTTCTT
CTCCCCACCAGCGCGATACGTATGTACGGTACCTTGGTTGTATTTACATT
TGCACAAGCAATTGGGATTTTGCGCAGGAAGGTTCTGGCACGATGCTAAA
CAAAGCGCAAGTAACCCCCCCTACACACACACACACACAATCGGTCCGGC
GAACCCGTAAATATAGGCGAAGCCACTTCCATGCCGGCGGACAAAGTTCT
GGCAACAACTTCAATACTTCTTCGTATGAGTCCAGCGCAGCCCTCGCGTA
GGTGGAAAAAACAAAACGGGTGCGAGGACCACATGACGCACGTGGGTCTA
CGTGATTTTCGCTGCTGAATGGTGTGAGGCTCTTCCACAAGAACGAGACA
AAACACCTAGTCTAGCCGTTCAGCTGCAACCACGCCTCTAGGTCTATATG
CTGAAAGAGTGCGGCACCAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9771:5634..6253+

>mRNA_L-elsbetiae_contig9771.18729.1 ID=mRNA_L-elsbetiae_contig9771.18729.1|Name=mRNA_L-elsbetiae_contig9771.18729.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig9771:5634..6253+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACAAATGACATAAAAACGCTTGCCAGGAAAAGGGGAGAGCGCGTGCC
TGTTATTTTTTCTTCTCCCCACCAGCGCGATACGTATGTACGGTACCTTG
GTTGTATTTACATTTGCACAAGCAATTGGGATTTTGCGCAGGAAGGTTCT
GGCACGATGCTAAACAAAGCGCAAGTAACCCCCCCTACACACACACACAC
ACAATCGGTCCGGCGAACCCGTAAATATAGGCGAAGCCACTTCCATGCCG
GCGGACAAAGTTCTGGCAACAACTTCAATACTTCTTCGTATGAGTCCAGC
GCAGCCCTCGCGTAGATGACAAATGACATAAAAACGCTTGCCAGGAAAAG
GGGAGAGCGCGTGCCTGTTATTTTTTCTTCTCCCCACCAGCGCGATACGT
ATGTACGGTACCTTGGTTGTATTTACATTTGCACAAGCAATTGGGATTTT
GCGCAGGAAGGTTCTGGCACGATGCTAAACAAAGCGCAAGTAACCCCCCC
TACACACACACACACACAATCGGTCCGGCGAACCCGTAAATATAGGCGAA
GCCACTTCCATGCCGGCGGACAAAGTTCTGGCAACAACTTCAATACTTCT
TCGTATGAGTCCAGCGCAGCCCTCGCGTAG
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