mRNA_L-elsbetiae_contig9767.18723.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9767.18723.1
Unique NamemRNA_L-elsbetiae_contig9767.18723.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9767.18723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9767contigL-elsbetiae_contig9767:1768..2785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1018
Cds size534
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9767.18723.1prot_L-elsbetiae_contig9767.18723.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9767 1786..2319 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817038.635303-UTR-L-elsbetiae_contig9767:1767..17851622817038.635303-UTR-L-elsbetiae_contig9767:1767..1785Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9767 1768..1785 +
1691684001.0054803-UTR-L-elsbetiae_contig9767:1767..17851691684001.0054803-UTR-L-elsbetiae_contig9767:1767..1785Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9767 1768..1785 +
1622817038.6557148-UTR-L-elsbetiae_contig9767:2319..27851622817038.6557148-UTR-L-elsbetiae_contig9767:2319..2785Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9767 2320..2785 +
1691684001.026633-UTR-L-elsbetiae_contig9767:2319..27851691684001.026633-UTR-L-elsbetiae_contig9767:2319..2785Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9767 2320..2785 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817038.6455553-CDS-L-elsbetiae_contig9767:1785..23191622817038.6455553-CDS-L-elsbetiae_contig9767:1785..2319Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9767 1786..2319 +
1691684001.016556-CDS-L-elsbetiae_contig9767:1785..23191691684001.016556-CDS-L-elsbetiae_contig9767:1785..2319Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9767 1786..2319 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9767.18723.1

>prot_L-elsbetiae_contig9767.18723.1 ID=prot_L-elsbetiae_contig9767.18723.1|Name=mRNA_L-elsbetiae_contig9767.18723.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=178bp
MRQTKEAFCRFGSHAAGGRHAGYSDSGSRGHQGIQLEWILIVPTRTGSMP
MCNTVFLKSYGTYLCSQKTEKEEADAHLLSAYHQADLSLGEDFRHGRLGL
PWQFCGDCCTVNSSIVAWRNGRMSAAVLVFFIVVNFIGRKFVCVEVCAQQ
CIFVGAFSVAPSLAGERQRKCLAEYFP*
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mRNA from alignment at L-elsbetiae_contig9767:1768..2785+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9767.18723.1 ID=mRNA_L-elsbetiae_contig9767.18723.1|Name=mRNA_L-elsbetiae_contig9767.18723.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1018bp|location=Sequence derived from alignment at L-elsbetiae_contig9767:1768..2785+ (Laminarionema elsbetiae ELsaHSoW15)
CGTGCGCAGAACTCGCAGATGCGCCAAACAAAGGAGGCGTTTTGCCGGTT
TGGCTCTCATGCTGCCGGAGGTAGACATGCGGGGTATTCCGATTCCGGGT
CTCGAGGACACCAGGGCATACAGCTTGAGTGGATCCTCATCGTGCCGACT
AGAACTGGGAGTATGCCCATGTGCAACACCGTTTTCTTAAAGAGCTACGG
TACATATCTATGTAGTCAAAAGACAGAGAAGGAAGAAGCGGATGCCCATC
TGCTTTCAGCATACCATCAGGCCGATCTATCTCTTGGGGAGGACTTCAGG
CATGGGCGCTTGGGCCTTCCCTGGCAATTTTGTGGTGACTGCTGTACAGT
AAATAGTAGTATTGTAGCATGGAGGAATGGGAGGATGAGCGCAGCCGTGC
TGGTGTTTTTCATTGTTGTGAACTTTATAGGGAGGAAGTTTGTGTGTGTA
GAAGTATGCGCTCAACAGTGCATTTTTGTGGGGGCGTTCTCAGTTGCGCC
CTCCCTAGCGGGAGAACGCCAGAGAAAATGCTTGGCGGAATACTTTCCGT
AGACGTACATACCCACCGGTTCCTTTCGGGAATGTTTTTTAGGAGGGAGC
AAGTTGTTGAGTTGGATTTGTCGTTATGGCAAAAATACCCAAGTGGTCAC
CGGTCGTTGTTTGTATCCGCTGTACAATCTCAATTATTGGATGTTTTCTT
GTATTTGTATTTGTTTGTAGTTCTGCTCTCTGGATTTGGCTGAAATGTTT
TTAATGTTGCAGGTAATTTCTCAGGTTTTGTACTTGAGTGTTTGGTTTTT
TACCATGCCTGAAAAGACGAAAAGAAAGCTAGATGTTCATGGGTGTTCCA
TTATTGTTGTTGGACTTAATTGTTTCCGGATCAGTGCTGTAAAAAACTAC
AAGGCGAGCGCTACGGGTAGAGCGGCGGAGGCATATACTCGTCGTGGAGG
GGTTCCTTGTGCGGGATACGCATTGGCACGTTGGTGTTGTGGTTCAGATT
ACGATCGAATGGGGCCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9767:1768..2785+

>mRNA_L-elsbetiae_contig9767.18723.1 ID=mRNA_L-elsbetiae_contig9767.18723.1|Name=mRNA_L-elsbetiae_contig9767.18723.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1068bp|location=Sequence derived from alignment at L-elsbetiae_contig9767:1768..2785+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGCCAAACAAAGGAGGCGTTTTGCCGGTTTGGCTCTCATGCTGCCGG
AGGTAGACATGCGGGGTATTCCGATTCCGGGTCTCGAGGACACCAGGGCA
TACAGCTTGAGTGGATCCTCATCGTGCCGACTAGAACTGGGAGTATGCCC
ATGTGCAACACCGTTTTCTTAAAGAGCTACGGTACATATCTATGTAGTCA
AAAGACAGAGAAGGAAGAAGCGGATGCCCATCTGCTTTCAGCATACCATC
AGGCCGATCTATCTCTTGGGGAGGACTTCAGGCATGGGCGCTTGGGCCTT
CCCTGGCAATTTTGTGGTGACTGCTGTACAGTAAATAGTAGTATTGTAGC
ATGGAGGAATGGGAGGATGAGCGCAGCCGTGCTGGTGTTTTTCATTGTTG
TGAACTTTATAGGGAGGAAGTTTGTGTGTGTAGAAGTATGCGCTCAACAG
TGCATTTTTGTGGGGGCGTTCTCAGTTGCGCCCTCCCTAGCGGGAGAACG
CCAGAGAAAATGCTTGGCGGAATACTTTCCGTAGATGCGCCAAACAAAGG
AGGCGTTTTGCCGGTTTGGCTCTCATGCTGCCGGAGGTAGACATGCGGGG
TATTCCGATTCCGGGTCTCGAGGACACCAGGGCATACAGCTTGAGTGGAT
CCTCATCGTGCCGACTAGAACTGGGAGTATGCCCATGTGCAACACCGTTT
TCTTAAAGAGCTACGGTACATATCTATGTAGTCAAAAGACAGAGAAGGAA
GAAGCGGATGCCCATCTGCTTTCAGCATACCATCAGGCCGATCTATCTCT
TGGGGAGGACTTCAGGCATGGGCGCTTGGGCCTTCCCTGGCAATTTTGTG
GTGACTGCTGTACAGTAAATAGTAGTATTGTAGCATGGAGGAATGGGAGG
ATGAGCGCAGCCGTGCTGGTGTTTTTCATTGTTGTGAACTTTATAGGGAG
GAAGTTTGTGTGTGTAGAAGTATGCGCTCAACAGTGCATTTTTGTGGGGG
CGTTCTCAGTTGCGCCCTCCCTAGCGGGAGAACGCCAGAGAAAATGCTTG
GCGGAATACTTTCCGTAG
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