mRNA_L-elsbetiae_contig9765.18721.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9765.18721.1
Unique NamemRNA_L-elsbetiae_contig9765.18721.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9765.18721.1 vs. uniprot
Match: A0A6H5JVF1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVF1_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 8.710e-14
Identity = 45/81 (55.56%), Postives = 54/81 (66.67%), Query Frame = 1 
Query:    1 EATLTDARLNFESFARVKAQIEALAPSLAGFGEGTGWLVFSLQFCNERGSLVSLLPSAYDPSEFCEPRLPRGQKVYLRATV 243
            E TL   RL+F SFA +KAQIE L PSLAGF EG  W + S+QFC++   LV LLPS +DP +F   +     KVYLRATV
Sbjct:   38 EVTLAP-RLSFASFAGLKAQIEDLVPSLAGFEEGR-WCLLSVQFCDDDFDLVELLPSTFDPRDFEHVQ----HKVYLRATV 112
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BLAST of mRNA_L-elsbetiae_contig9765.18721.1 vs. uniprot
Match: D7FRP3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRP3_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 5.130e-12
Identity = 43/81 (53.09%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:    1 EATLTDARLNFESFARVKAQIEALAPSLAGFGEGTGWLVFSLQFCNERGSLVSLLPSAYDPSEFCEPRLPRGQKVYLRATV 243
            E TL   RL+F SFA +KAQIE L  SLAGF EG  W + S+QFC++   LV LLPS +DP +F   +     KVYLR TV
Sbjct:   38 EVTLAP-RLSFASFAGLKAQIEDLVRSLAGFEEGR-WCLLSVQFCDDDFDLVELLPSTFDPRDFENVQ----DKVYLRVTV 112
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9765.18721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JVF1_9PHAE8.710e-1455.56Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FRP3_ECTSI5.130e-1253.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9765contigL-elsbetiae_contig9765:2389..2666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.6
Seed ortholog evalue2.1e-10
Seed eggNOG ortholog2880.D7FRP3
Hectar predicted targeting categoryother localisation
EggNOG OGs2C7IG@1,2QWI0@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_003320.1
Exons1
Model size280
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817038.607511-CDS-L-elsbetiae_contig9765:2388..26641622817038.607511-CDS-L-elsbetiae_contig9765:2388..2664Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9765 2389..2664 +
1691684000.990833-CDS-L-elsbetiae_contig9765:2388..26641691684000.990833-CDS-L-elsbetiae_contig9765:2388..2664Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9765 2389..2664 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9765.18721.1prot_L-elsbetiae_contig9765.18721.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9765 2389..2664 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9765.18721.1

>prot_L-elsbetiae_contig9765.18721.1 ID=prot_L-elsbetiae_contig9765.18721.1|Name=mRNA_L-elsbetiae_contig9765.18721.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
EATLTDARLNFESFARVKAQIEALAPSLAGFGEGTGWLVFSLQFCNERGS
LVSLLPSAYDPSEFCEPRLPRGQKVYLRATVAPSPRVHGIET
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mRNA from alignment at L-elsbetiae_contig9765:2389..2666+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9765.18721.1 ID=mRNA_L-elsbetiae_contig9765.18721.1|Name=mRNA_L-elsbetiae_contig9765.18721.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=278bp|location=Sequence derived from alignment at L-elsbetiae_contig9765:2389..2666+ (Laminarionema elsbetiae ELsaHSoW15)
GAGGCAACTCTAACTGATGCAAGGCTAAACTTCGAGTCATTCGCGAGGGT
GAAGGCCCAGATCGAAGCCCTAGCGCCGTCCCTGGCTGGATTCGGGGAAG
GGACGGGGTGGCTCGTGTTCTCTTTGCAGTTTTGTAACGAGAGAGGCAGC
CTAGTCTCGCTCTTACCCTCTGCGTATGACCCTTCAGAGTTTTGTGAGCC
AAGACTGCCAAGGGGTCAAAAGGTGTACCTCAGAGCCACGGTCGCCCCTA
GCCCTAGAGTCCACGGCATAGAAACAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9765:2389..2666+

>mRNA_L-elsbetiae_contig9765.18721.1 ID=mRNA_L-elsbetiae_contig9765.18721.1|Name=mRNA_L-elsbetiae_contig9765.18721.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig9765:2389..2666+ (Laminarionema elsbetiae ELsaHSoW15)
GAGGCAACTCTAACTGATGCAAGGCTAAACTTCGAGTCATTCGCGAGGGT
GAAGGCCCAGATCGAAGCCCTAGCGCCGTCCCTGGCTGGATTCGGGGAAG
GGACGGGGTGGCTCGTGTTCTCTTTGCAGTTTTGTAACGAGAGAGGCAGC
CTAGTCTCGCTCTTACCCTCTGCGTATGACCCTTCAGAGTTTTGTGAGCC
AAGACTGCCAAGGGGTCAAAAGGTGTACCTCAGAGCCACGGTCGCCCCTA
GCCCTAGAGTCCACGGCATAGAAACAGAGGCAACTCTAACTGATGCAAGG
CTAAACTTCGAGTCATTCGCGAGGGTGAAGGCCCAGATCGAAGCCCTAGC
GCCGTCCCTGGCTGGATTCGGGGAAGGGACGGGGTGGCTCGTGTTCTCTT
TGCAGTTTTGTAACGAGAGAGGCAGCCTAGTCTCGCTCTTACCCTCTGCG
TATGACCCTTCAGAGTTTTGTGAGCCAAGACTGCCAAGGGGTCAAAAGGT
GTACCTCAGAGCCACGGTCGCCCCTAGCCCTAGAGTCCACGGCATAGAAA
CA
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