mRNA_L-elsbetiae_contig9760.18719.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9760.18719.1
Unique NamemRNA_L-elsbetiae_contig9760.18719.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9760.18719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9760contigL-elsbetiae_contig9760:278..1027 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size752
Cds size750
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817038.47639-CDS-L-elsbetiae_contig9760:277..10271622817038.47639-CDS-L-elsbetiae_contig9760:277..1027Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9760 278..1027 +
1691684000.8994772-CDS-L-elsbetiae_contig9760:277..10271691684000.8994772-CDS-L-elsbetiae_contig9760:277..1027Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9760 278..1027 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9760.18719.1prot_L-elsbetiae_contig9760.18719.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9760 278..1027 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9760.18719.1

>prot_L-elsbetiae_contig9760.18719.1 ID=prot_L-elsbetiae_contig9760.18719.1|Name=mRNA_L-elsbetiae_contig9760.18719.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=250bp
AKGETTARGRIHPATSLRTGRCIARCTRAYAHTPHNLFLPLQHHFSSSTF
MGIMDSYKEALINGRRHGRQARRYNCSISQQRQQQRQQQQQRSSLNVQRE
NRPTGALPPSRGVARIGRQFRNLQQHVGRRSASQSVFQPRRVIVASPRNE
DQHGVFLGSRYEAFADVIVPGQSRADRHEMVARLRKLGFLDEAEYITVKD
FIVSLPHLHQRHDLLFILDSKTFNFLLGGWARDSESIFDFALSSKSVSV*
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mRNA from alignment at L-elsbetiae_contig9760:278..1027+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9760.18719.1 ID=mRNA_L-elsbetiae_contig9760.18719.1|Name=mRNA_L-elsbetiae_contig9760.18719.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=750bp|location=Sequence derived from alignment at L-elsbetiae_contig9760:278..1027+ (Laminarionema elsbetiae ELsaHSoW15)
GCTAAGGGGGAGACAACAGCCCGAGGACGCATTCATCCGGCGACTTCTCT
CCGGACGGGACGTTGTATAGCGCGATGCACTCGAGCTTACGCACACACAC
CACACAACCTTTTTCTCCCTCTTCAACACCACTTCTCTTCTTCAACTTTT
ATGGGCATCATGGATTCATACAAGGAAGCTCTGATCAACGGCCGTCGCCA
CGGACGCCAGGCGAGGCGTTACAACTGCAGCATCAGCCAGCAGCGTCAAC
AGCAGCGTCAGCAGCAGCAGCAGCGGAGCAGCCTCAACGTTCAGCGTGAA
AACAGGCCTACTGGAGCGCTCCCACCTTCTCGCGGAGTGGCGCGCATCGG
GCGCCAGTTTCGGAATCTACAGCAGCACGTAGGGAGGCGATCGGCATCTC
AGTCGGTCTTCCAGCCGAGGCGCGTCATCGTCGCTTCGCCTCGCAATGAG
GACCAACACGGAGTATTTCTTGGATCGAGGTACGAAGCGTTCGCGGATGT
TATTGTACCCGGACAGTCGAGGGCCGACCGACACGAAATGGTCGCGCGGC
TGAGGAAGCTAGGGTTCCTAGACGAAGCGGAGTACATCACCGTCAAGGAC
TTCATCGTCTCGCTGCCGCACCTTCACCAGCGCCACGATCTTCTGTTCAT
CCTGGACTCCAAGACCTTCAACTTCTTGCTCGGAGGTTGGGCTAGGGACT
CTGAGTCTATTTTTGATTTCGCGCTATCTAGCAAAAGTGTAAGTGTATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9760:278..1027+

>mRNA_L-elsbetiae_contig9760.18719.1 ID=mRNA_L-elsbetiae_contig9760.18719.1|Name=mRNA_L-elsbetiae_contig9760.18719.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1500bp|location=Sequence derived from alignment at L-elsbetiae_contig9760:278..1027+ (Laminarionema elsbetiae ELsaHSoW15)
GCTAAGGGGGAGACAACAGCCCGAGGACGCATTCATCCGGCGACTTCTCT
CCGGACGGGACGTTGTATAGCGCGATGCACTCGAGCTTACGCACACACAC
CACACAACCTTTTTCTCCCTCTTCAACACCACTTCTCTTCTTCAACTTTT
ATGGGCATCATGGATTCATACAAGGAAGCTCTGATCAACGGCCGTCGCCA
CGGACGCCAGGCGAGGCGTTACAACTGCAGCATCAGCCAGCAGCGTCAAC
AGCAGCGTCAGCAGCAGCAGCAGCGGAGCAGCCTCAACGTTCAGCGTGAA
AACAGGCCTACTGGAGCGCTCCCACCTTCTCGCGGAGTGGCGCGCATCGG
GCGCCAGTTTCGGAATCTACAGCAGCACGTAGGGAGGCGATCGGCATCTC
AGTCGGTCTTCCAGCCGAGGCGCGTCATCGTCGCTTCGCCTCGCAATGAG
GACCAACACGGAGTATTTCTTGGATCGAGGTACGAAGCGTTCGCGGATGT
TATTGTACCCGGACAGTCGAGGGCCGACCGACACGAAATGGTCGCGCGGC
TGAGGAAGCTAGGGTTCCTAGACGAAGCGGAGTACATCACCGTCAAGGAC
TTCATCGTCTCGCTGCCGCACCTTCACCAGCGCCACGATCTTCTGTTCAT
CCTGGACTCCAAGACCTTCAACTTCTTGCTCGGAGGTTGGGCTAGGGACT
CTGAGTCTATTTTTGATTTCGCGCTATCTAGCAAAAGTGTAAGTGTATGA
GCTAAGGGGGAGACAACAGCCCGAGGACGCATTCATCCGGCGACTTCTCT
CCGGACGGGACGTTGTATAGCGCGATGCACTCGAGCTTACGCACACACAC
CACACAACCTTTTTCTCCCTCTTCAACACCACTTCTCTTCTTCAACTTTT
ATGGGCATCATGGATTCATACAAGGAAGCTCTGATCAACGGCCGTCGCCA
CGGACGCCAGGCGAGGCGTTACAACTGCAGCATCAGCCAGCAGCGTCAAC
AGCAGCGTCAGCAGCAGCAGCAGCGGAGCAGCCTCAACGTTCAGCGTGAA
AACAGGCCTACTGGAGCGCTCCCACCTTCTCGCGGAGTGGCGCGCATCGG
GCGCCAGTTTCGGAATCTACAGCAGCACGTAGGGAGGCGATCGGCATCTC
AGTCGGTCTTCCAGCCGAGGCGCGTCATCGTCGCTTCGCCTCGCAATGAG
GACCAACACGGAGTATTTCTTGGATCGAGGTACGAAGCGTTCGCGGATGT
TATTGTACCCGGACAGTCGAGGGCCGACCGACACGAAATGGTCGCGCGGC
TGAGGAAGCTAGGGTTCCTAGACGAAGCGGAGTACATCACCGTCAAGGAC
TTCATCGTCTCGCTGCCGCACCTTCACCAGCGCCACGATCTTCTGTTCAT
CCTGGACTCCAAGACCTTCAACTTCTTGCTCGGAGGTTGGGCTAGGGACT
CTGAGTCTATTTTTGATTTCGCGCTATCTAGCAAAAGTGTAAGTGTATGA
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